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Volumn 316-318, Issue , 2012, Pages 284-291

The influence of a C-terminal basic residue on peptide fragmentation pathways

Author keywords

Collision induced dissociation; Electron transfer dissociation; Peptide fragmentation; Proteomics

Indexed keywords


EID: 84860525402     PISSN: 13873806     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ijms.2012.02.017     Document Type: Article
Times cited : (3)

References (29)
  • 1
    • 0000857494 scopus 로고
    • An approach to correlate tandem mass-spectral data of peptides with amino-acid-sequences in a protein database
    • J.K. Eng, A.L. Mccormack, and J.R. Yates An approach to correlate tandem mass-spectral data of peptides with amino-acid-sequences in a protein database Journal of the American Society for Mass Spectrometry 5 11 1994 976 989
    • (1994) Journal of the American Society for Mass Spectrometry , vol.5 , Issue.11 , pp. 976-989
    • Eng, J.K.1    McCormack, A.L.2    Yates, J.R.3
  • 2
    • 18744398125 scopus 로고    scopus 로고
    • Large-scate database searching using tandem mass spectra: Looking up the answer in the back of the book
    • R.G. Sadygov, D. Cociorva, and J.R. Yates Large-scate database searching using tandem mass spectra: looking up the answer in the back of the book Nature Methods 1 3 2004 195 202
    • (2004) Nature Methods , vol.1 , Issue.3 , pp. 195-202
    • Sadygov, R.G.1    Cociorva, D.2    Yates, J.R.3
  • 3
    • 4444335470 scopus 로고    scopus 로고
    • The ABC's (and XYZ's) of peptide sequencing
    • DOI 10.1038/nrm1468
    • H. Steen, and M. Mann The ABC's (and XYZ's) of peptide sequencing Nature Reviews Molecular Cell Biology 5 9 2004 699 711 (Pubitemid 39208180)
    • (2004) Nature Reviews Molecular Cell Biology , vol.5 , Issue.9 , pp. 699-711
    • Steen, H.1    Mann, M.2
  • 4
    • 0034501099 scopus 로고    scopus 로고
    • Mobile and localized protons: A framework for understanding peptide dissociation
    • DOI 10.1002/1096-9888(200012)35:12<1399::AID-JMS86>3.0.CO;2-R
    • V.H. Wysocki, G. Tsaprailis, L.L. Smith, and L.A. Breci Mobile and localized protons: a framework for understanding peptide dissociation Journal of Mass Spectrometry 35 12 2000 1399 1406 (Pubitemid 32063646)
    • (2000) Journal of Mass Spectrometry , vol.35 , Issue.12 , pp. 1399-1406
    • Wysocki, V.H.1    Tsaprailis, G.2    Smith, L.L.3    Breci, L.A.4
  • 8
    • 36749068401 scopus 로고    scopus 로고
    • Performance characteristics of electron transfer dissociation mass spectrometry
    • DOI 10.1074/mcp.M700073-MCP200
    • D.M. Good Performance characteristics of electron transfer dissociation mass spectrometry Molecular & Cellular Proteomics 6 11 2007 1942 1951 (Pubitemid 350213868)
    • (2007) Molecular and Cellular Proteomics , vol.6 , Issue.11 , pp. 1942-1951
    • Good, D.M.1    Wirtala, M.2    McAlister, G.C.3    Coon, J.J.4
  • 9
    • 21844457685 scopus 로고    scopus 로고
    • Fragmentation pathways of protonated peptides
    • B. Paizs, and S. Suhai Fragmentation pathways of protonated peptides Mass Spectrometry Reviews 24 4 2005 508 548
    • (2005) Mass Spectrometry Reviews , vol.24 , Issue.4 , pp. 508-548
    • Paizs, B.1    Suhai, S.2
  • 10
    • 0001595008 scopus 로고
    • The effect of protonation site on bond strengths in simple peptides - Application of ab-initio and modified neglect of differential-overlap bond orders and modified neglect of differential-overlap energy partitioning
    • A. Somogyi, V.H. Wysocki, and I. Mayer The effect of protonation site on bond strengths in simple peptides - application of ab-initio and modified neglect of differential-overlap bond orders and modified neglect of differential-overlap energy partitioning Journal of the American Society for Mass Spectrometry 5 8 1994 704 717
    • (1994) Journal of the American Society for Mass Spectrometry , vol.5 , Issue.8 , pp. 704-717
    • Somogyi, A.1    Wysocki, V.H.2    Mayer, I.3
  • 12
    • 84987044301 scopus 로고
    • Hydrogen transfer-reactions in the formation of y + 2 sequence ions from protonated peptides
    • D.R. Mueller, M. Eckersley, and W.J. Richter Hydrogen transfer-reactions in the formation of Y + 2 sequence ions from protonated peptides Organic Mass Spectrometry 23 3 1988 217 222
    • (1988) Organic Mass Spectrometry , vol.23 , Issue.3 , pp. 217-222
    • Mueller, D.R.1    Eckersley, M.2    Richter, W.J.3
  • 13
    • 0027618667 scopus 로고
    • The neutral products formed during backbone fragmentations of protonated peptides in tandem mass-spectrometry
    • M.M. Cordero, J.J. Houser, and C. Wesdemiotis The neutral products formed during backbone fragmentations of protonated peptides in tandem mass-spectrometry Analytical Chemistry 65 11 1993 1594 1601
    • (1993) Analytical Chemistry , vol.65 , Issue.11 , pp. 1594-1601
    • Cordero, M.M.1    Houser, J.J.2    Wesdemiotis, C.3
  • 14
    • 0027918107 scopus 로고
    • Fragmentation reactions of multiply-protonated peptides and implications for sequencing by tandem mass-spectrometry with low-energy collision-induced dissociation
    • X.J. Tang, P. Thibault, and R.K. Boyd Fragmentation reactions of multiply-protonated peptides and implications for sequencing by tandem mass-spectrometry with low-energy collision-induced dissociation Analytical Chemistry 65 20 1993 2824 2834
    • (1993) Analytical Chemistry , vol.65 , Issue.20 , pp. 2824-2834
    • Tang, X.J.1    Thibault, P.2    Boyd, R.K.3
  • 15
    • 66149174786 scopus 로고    scopus 로고
    • Observations on the detection of b- and y-type ions in the collisionally activated decomposition spectra of protonated peptides
    • K.W. Lau Observations on the detection of b- and y-type ions in the collisionally activated decomposition spectra of protonated peptides Rapid Communications in Mass Spectrometry 23 10 2009 1508 1514
    • (2009) Rapid Communications in Mass Spectrometry , vol.23 , Issue.10 , pp. 1508-1514
    • Lau, K.W.1
  • 16
    • 0035478709 scopus 로고    scopus 로고
    • Analysis of phosphorylated proteins and peptides by mass spectrometry
    • DOI 10.1016/S1367-5931(00)00250-7
    • D.T. McLachlin, and B.T. Chait Analysis of phosphorylated proteins and peptides by mass spectrometry Current Opinion in Chemical Biology 5 5 2001 591 602 (Pubitemid 32907613)
    • (2001) Current Opinion in Chemical Biology , vol.5 , Issue.5 , pp. 591-602
    • McLachlin, D.T.1    Chait, B.T.2
  • 17
    • 0034667929 scopus 로고    scopus 로고
    • Activated ion electron capture dissociation for mass spectral sequencing of larger (42 kDa) proteins
    • D.M. Horn, Y. Ge, and F.W. McLafferty Activated ion electron capture dissociation for mass spectral sequencing of larger (42 kDa) proteins Analytical Chemistry 72 20 2000 4778 4784
    • (2000) Analytical Chemistry , vol.72 , Issue.20 , pp. 4778-4784
    • Horn, D.M.1    Ge, Y.2    McLafferty, F.W.3
  • 18
    • 33846269339 scopus 로고    scopus 로고
    • Supplemental activation method for high-efficiency electron-transfer dissociation of doubly protonated peptide precursors
    • DOI 10.1021/ac061457f
    • D.L. Swaney Supplemental activation method for high-efficiency electron-transfer dissociation of doubly protonated peptide precursors Analytical Chemistry 79 2 2007 477 485 (Pubitemid 46110632)
    • (2007) Analytical Chemistry , vol.79 , Issue.2 , pp. 477-485
    • Swaney, D.L.1    McAlister, G.C.2    Wirtala, M.3    Schwartz, J.C.4    Syka, J.E.P.5    Coon, J.J.6
  • 19
    • 0033565832 scopus 로고    scopus 로고
    • Role of accurate mass measurement (±10 ppm) in protein identification strategies employing MS or MS/MS and database searching
    • DOI 10.1021/ac9810516
    • K.R. Clauser, P. Baker, and A.L. Burlingame Role of accurate mass measurement (±10 ppm) in protein identification strategies employing MS or MS-MS and database searching Analytical Chemistry 71 14 1999 2871 2882 (Pubitemid 29340480)
    • (1999) Analytical Chemistry , vol.71 , Issue.14 , pp. 2871-2882
    • Clauser, K.R.1    Baker, P.2    Burlingame, A.L.3
  • 20
    • 75649110103 scopus 로고    scopus 로고
    • Statistical analysis of peptide electron transfer dissociation fragmentation mass spectrometry
    • R.J. Chalkley Statistical analysis of peptide electron transfer dissociation fragmentation mass spectrometry Analytical Chemistry 82 2 2010 579 584
    • (2010) Analytical Chemistry , vol.82 , Issue.2 , pp. 579-584
    • Chalkley, R.J.1
  • 21
    • 0037353846 scopus 로고    scopus 로고
    • Statistical characterization of ion trap tandem mass spectra from doubly charged tryptic peptides
    • DOI 10.1021/ac026122m
    • D.L. Tabb Statistical characterization of ion trap tandem mass spectra from doubly charged tryptic peptides Analytical Chemistry 75 5 2003 1155 1163 (Pubitemid 36402645)
    • (2003) Analytical Chemistry , vol.75 , Issue.5 , pp. 1155-1163
    • Tabb, D.L.1    Smith, L.L.2    Breci, L.A.3    Wysocki, V.H.4    Lin, D.5    Yates III, J.R.6
  • 22
    • 0038034116 scopus 로고    scopus 로고
    • Cleavage N-terminal to proline: Analysis of a database of peptide tandem mass spectra
    • DOI 10.1021/ac026359i
    • L.A. Breci Cleavage N-terminal to proline: analysis of a database of peptide tandem mass spectra Analytical Chemistry 75 9 2003 1963 1971 (Pubitemid 36542332)
    • (2003) Analytical Chemistry , vol.75 , Issue.9 , pp. 1963-1971
    • Breci, L.A.1    Tabb, D.L.2    Yates III, J.R.3    Wysocki, V.H.4
  • 23
    • 0029823591 scopus 로고    scopus 로고
    • Probing the proline effect in CID of protonated peptides [1]
    • DOI 10.1002/(SICI)1096-9888(199610)31:10<1185::AID-JMS396>3.0.CO;2- Q
    • T. Vaisar, and J. Urban Probing the proline effect in CID of protonated peptides Journal of Mass Spectrometry 31 10 1996 1185 1187 (Pubitemid 26360255)
    • (1996) Journal of Mass Spectrometry , vol.31 , Issue.10 , pp. 1185-1187
    • Vaisar, T.1    Urban, J.2
  • 24
    • 2342517539 scopus 로고    scopus 로고
    • Fragmentation of protonated tripeptides: The proline effect revisited
    • R.N. Grewal Fragmentation of protonated tripeptides: the proline effect revisited Journal of Physical Chemistry B 108 15 2004 4899 4908
    • (2004) Journal of Physical Chemistry B , vol.108 , Issue.15 , pp. 4899-4908
    • Grewal, R.N.1
  • 27
    • 0345862097 scopus 로고    scopus 로고
    • Towards understanding the tandem mass spectra of protonated oligopeptides. 1: Mechanism of amide bond cleavage
    • DOI 10.1016/j.jasms.2003.09.010
    • B. Paizs, and S. Suhai Towards understanding the tandem mass spectra of protonated oligopeptides. 1: Mechanism of amide bond cleavage Journal of the American Society for Mass Spectrometry 15 1 2004 103 113 (Pubitemid 38091672)
    • (2004) Journal of the American Society for Mass Spectrometry , vol.15 , Issue.1 , pp. 103-113
    • Paizs, B.1    Suhai, S.2
  • 28
    • 0036023990 scopus 로고    scopus 로고
    • Towards understanding some ion intensity relationships for the tandem mass spectra of protonated peptides
    • B. Paizs, and S. Suhai Towards understanding some ion intensity relationships for the tandem mass spectra of protonated peptides Rapid Communications in Mass Spectrometry 16 17 2002 1699 1702
    • (2002) Rapid Communications in Mass Spectrometry , vol.16 , Issue.17 , pp. 1699-1702
    • Paizs, B.1    Suhai, S.2
  • 29
    • 78649529376 scopus 로고    scopus 로고
    • Influence of charge state and amino acid composition on hydrogen transfer in electron capture dissociation of peptides
    • T. Nishikaze, and M. Takayama Influence of charge state and amino acid composition on hydrogen transfer in electron capture dissociation of peptides Journal of the American Society for Mass Spectrometry 21 12 2010 1979 1988
    • (2010) Journal of the American Society for Mass Spectrometry , vol.21 , Issue.12 , pp. 1979-1988
    • Nishikaze, T.1    Takayama, M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.