메뉴 건너뛰기




Volumn 7, Issue 5, 2012, Pages

Low-cost ultra-wide genotyping using roche/454 pyrosequencing for surveillance of HIV drug resistance

Author keywords

[No Author keywords available]

Indexed keywords

ANTI HUMAN IMMUNODEFICIENCY VIRUS AGENT; ATAZANAVIR; EFAVIRENZ; LAMIVUDINE; LOPINAVIR; PROTEINASE; RITONAVIR; RNA DIRECTED DNA POLYMERASE; ZIDOVUDINE; VIRUS RNA;

EID: 84860521943     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0036494     Document Type: Article
Times cited : (82)

References (31)
  • 1
    • 79953061279 scopus 로고    scopus 로고
    • Towards universal access: scaling up priority HIV/AIDS interventions in the health sector. Progress report 2010
    • Available:. Accessed 2012 Apr, WHO UNICEF, UNAIDS
    • WHO UNICEF, UNAIDS, (2010) Towards universal access: scaling up priority HIV/AIDS interventions in the health sector. Progress report 2010. 15 Available: http://www.who.int/hiv/pub/2010progressreport/en/. Accessed 2012 Apr.
    • (2010) , vol.15
  • 2
    • 79954853192 scopus 로고    scopus 로고
    • Transmitted antiretroviral drug resistance among newly HIV-1 diagnosed young individuals in Kampala
    • Ndembi N, Hamers RL, Sigaloff KC, Lyagoba F, Magambo B, et al. (2011) Transmitted antiretroviral drug resistance among newly HIV-1 diagnosed young individuals in Kampala. AIDS 25: 905-910.
    • (2011) AIDS , vol.25 , pp. 905-910
    • Ndembi, N.1    Hamers, R.L.2    Sigaloff, K.C.3    Lyagoba, F.4    Magambo, B.5
  • 3
    • 78651440411 scopus 로고    scopus 로고
    • Transmitted HIV type 1 drug resistance among individuals with recent HIV infection in East and Southern Africa
    • Price MA, Wallis CL, Lakhi S, Karita E, Kamali A, et al. (2011) Transmitted HIV type 1 drug resistance among individuals with recent HIV infection in East and Southern Africa. AIDS Res Hum Retroviruses 27: 5-12.
    • (2011) AIDS Res Hum Retroviruses , vol.27 , pp. 5-12
    • Price, M.A.1    Wallis, C.L.2    Lakhi, S.3    Karita, E.4    Kamali, A.5
  • 4
    • 84857942730 scopus 로고    scopus 로고
    • Emergence of HIV-1 drug resistance mutations among antiretroviral-naive HIV-1-infected patients after rapid scaling up of antiretroviral therapy in Thailand
    • Sungkanuparph S, Sukasem C, Kiertiburanakul S, Pasomsub E, Chantratita W, (2012) Emergence of HIV-1 drug resistance mutations among antiretroviral-naive HIV-1-infected patients after rapid scaling up of antiretroviral therapy in Thailand. J Int AIDS Soc 15: 12.
    • (2012) J Int AIDS Soc , vol.15 , pp. 12
    • Sungkanuparph, S.1    Sukasem, C.2    Kiertiburanakul, S.3    Pasomsub, E.4    Chantratita, W.5
  • 5
    • 47249105176 scopus 로고    scopus 로고
    • Recommendations for surveillance of transmitted HIV drug resistance in countries scaling up antiretroviral treatment
    • Bennett DE, Myatt M, Bertagnolio S, Sutherland D, Gilks CF, (2008) Recommendations for surveillance of transmitted HIV drug resistance in countries scaling up antiretroviral treatment. Antivir Ther 13 (Suppl 2): 25-36.
    • (2008) Antivir Ther , vol.13 , Issue.SUPPL. 2 , pp. 25-36
    • Bennett, D.E.1    Myatt, M.2    Bertagnolio, S.3    Sutherland, D.4    Gilks, C.F.5
  • 6
    • 79960082310 scopus 로고    scopus 로고
    • Antiretroviral Therapy for HIV Infection in Adults and Adolescents: Recommendations for a public health approach
    • World Health Organization, Geneva, WHO
    • World Health Organization (2010) Antiretroviral Therapy for HIV Infection in Adults and Adolescents: Recommendations for a public health approach. Geneva WHO.
    • (2010)
  • 7
    • 25144497593 scopus 로고    scopus 로고
    • Establishment of the serologic testing algorithm for recent human immunodeficiency virus (HIV) seroconversion (STARHS) strategy in the city of Sao Paulo, Brazil
    • Kallas EG, Bassichetto KC, Oliveira SM, Goldenberg I, Bortoloto R, et al. (2004) Establishment of the serologic testing algorithm for recent human immunodeficiency virus (HIV) seroconversion (STARHS) strategy in the city of Sao Paulo, Brazil. Braz J Infect Dis 8: 399-406.
    • (2004) Braz J Infect Dis , vol.8 , pp. 399-406
    • Kallas, E.G.1    Bassichetto, K.C.2    Oliveira, S.M.3    Goldenberg, I.4    Bortoloto, R.5
  • 8
    • 80054700479 scopus 로고    scopus 로고
    • Characterization of partial and near full-length genomes of HIV-1 strains sampled from recently infected individuals in Sao Paulo, Brazil
    • Sanabani SS, Pastena ER, da Costa AC, Martinez VP, Kleine-Neto W, et al. (2011) Characterization of partial and near full-length genomes of HIV-1 strains sampled from recently infected individuals in Sao Paulo, Brazil. PLoS One 6: e25869.
    • (2011) PLoS One , vol.6
    • Sanabani, S.S.1    Pastena, E.R.2    da Costa, A.C.3    Martinez, V.P.4    Kleine-Neto, W.5
  • 11
    • 77949587649 scopus 로고    scopus 로고
    • Fast and accurate long-read alignment with Burrows-Wheeler transform
    • Li H, Durbin R, (2010) Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinformatics 26: 589-595.
    • (2010) Bioinformatics , vol.26 , pp. 589-595
    • Li, H.1    Durbin, R.2
  • 12
    • 35348979734 scopus 로고    scopus 로고
    • Drug resistance among chronic HIV-1-infected patients naive for use of anti-retroviral therapy in Sao Paulo city
    • Gonsalez CR, Alcalde R, Nishiya A, Barreto CC, Silva FE, et al. (2007) Drug resistance among chronic HIV-1-infected patients naive for use of anti-retroviral therapy in Sao Paulo city. Virus Res 129: 87-90.
    • (2007) Virus Res , vol.129 , pp. 87-90
    • Gonsalez, C.R.1    Alcalde, R.2    Nishiya, A.3    Barreto, C.C.4    Silva, F.E.5
  • 13
    • 77149174220 scopus 로고    scopus 로고
    • Prevalence of primary drug resistance-associated mutations among HIV type 1 vertically Infected children in Belo Horizonte, Brazil
    • Ferreira FG, Pinto JA, Kakehasi FM, Cleto S, Tupinambas U, et al. (2010) Prevalence of primary drug resistance-associated mutations among HIV type 1 vertically Infected children in Belo Horizonte, Brazil. AIDS Res Hum Retroviruses 26: 229-232.
    • (2010) AIDS Res Hum Retroviruses , vol.26 , pp. 229-232
    • Ferreira, F.G.1    Pinto, J.A.2    Kakehasi, F.M.3    Cleto, S.4    Tupinambas, U.5
  • 14
    • 34249905472 scopus 로고    scopus 로고
    • High prevalence of primary antiretroviral resistance among HIV-1-infected adults and children in Bahia, a northeast state of Brazil
    • Pedroso C, Queiroz AT, Alcantara LC, Drexler JF, Diaz RS, et al. (2007) High prevalence of primary antiretroviral resistance among HIV-1-infected adults and children in Bahia, a northeast state of Brazil. J Acquir Immune Defic Syndr 45 (2): 251-253.
    • (2007) J Acquir Immune Defic Syndr , vol.45 , Issue.2 , pp. 251-253
    • Pedroso, C.1    Queiroz, A.T.2    Alcantara, L.C.3    Drexler, J.F.4    Diaz, R.S.5
  • 15
    • 2942566079 scopus 로고    scopus 로고
    • Performance of the Celera Diagnostics ViroSeq HIV-1 Genotyping System for sequence-based analysis of diverse human immunodeficiency virus type 1 strains
    • Eshleman SH, Hackett JJ, Swanson P, Cunningham SP, Drews B, et al. (2004) Performance of the Celera Diagnostics ViroSeq HIV-1 Genotyping System for sequence-based analysis of diverse human immunodeficiency virus type 1 strains. J Clin Microbiol 42: 2711-2717.
    • (2004) J Clin Microbiol , vol.42 , pp. 2711-2717
    • Eshleman, S.H.1    Hackett, J.J.2    Swanson, P.3    Cunningham, S.P.4    Drews, B.5
  • 16
    • 48749127377 scopus 로고    scopus 로고
    • Towards universal access: scaling up HIV interventions in the health sector
    • Available:. Accessed 2012 Apr, WHO UNAIDS, UNICEF, Progress report, September 55
    • WHO UNAIDS, UNICEF, (2009) Towards universal access: scaling up HIV interventions in the health sector. Progress report, September 55. 15 Available: http://www.who.int/hiv/pub/2009progressreport/en/. Accessed 2012 Apr.
    • (2009) , vol.15
  • 17
    • 80052943349 scopus 로고    scopus 로고
    • Next-generation sequencing of dried blood spot specimens: a novel approach to HIV drug-resistance surveillance
    • Ji H, Li Y, Graham M, Liang BB, Pilon R, et al. (2011) Next-generation sequencing of dried blood spot specimens: a novel approach to HIV drug-resistance surveillance. Antivir Ther 16: 871-878.
    • (2011) Antivir Ther , vol.16 , pp. 871-878
    • Ji, H.1    Li, Y.2    Graham, M.3    Liang, B.B.4    Pilon, R.5
  • 18
    • 81755174898 scopus 로고    scopus 로고
    • WHO/HIVResNet HIV Drug Resistance Laboratory Strategy
    • World Health Organization, Available:. Accessed 2012 Apr
    • World Health Organization (2010) WHO/HIVResNet HIV Drug Resistance Laboratory Strategy. 15 Available: http://www.who.int/hiv/pub/drugresistance/hiv_reslab_strategy.pdf. Accessed 2012 Apr.
    • (2010) , vol.15
  • 19
    • 79959598119 scopus 로고    scopus 로고
    • Minor HIV-1 Variants with the K103N Resistance Mutation during Intermittent Efavirenz-Containing Antiretroviral Therapy and Virological Failure
    • Delobel P, Saliou A, Nicot F, Dubois M, Trancart S, et al. (2011) Minor HIV-1 Variants with the K103N Resistance Mutation during Intermittent Efavirenz-Containing Antiretroviral Therapy and Virological Failure. PLoS One 6: e21655.
    • (2011) PLoS One , vol.6
    • Delobel, P.1    Saliou, A.2    Nicot, F.3    Dubois, M.4    Trancart, S.5
  • 20
    • 70350534553 scopus 로고    scopus 로고
    • Minority variants associated with transmitted and acquired HIV-1 nonnucleoside reverse transcriptase inhibitor resistance: implications for the use of second-generation nonnucleoside reverse transcriptase inhibitors
    • Varghese V, Shahriar R, Rhee SY, Liu T, Simen BB, et al. (2009) Minority variants associated with transmitted and acquired HIV-1 nonnucleoside reverse transcriptase inhibitor resistance: implications for the use of second-generation nonnucleoside reverse transcriptase inhibitors. J Acquir Immune Defic Syndr 52: 309-315.
    • (2009) J Acquir Immune Defic Syndr , vol.52 , pp. 309-315
    • Varghese, V.1    Shahriar, R.2    Rhee, S.Y.3    Liu, T.4    Simen, B.B.5
  • 21
    • 77956204474 scopus 로고    scopus 로고
    • Nucleic acid template and the risk of a PCR-Induced HIV-1 drug resistance mutation
    • Varghese V, Wang E, Babrzadeh F, Bachmann MH, Shahriar R, et al. (2010) Nucleic acid template and the risk of a PCR-Induced HIV-1 drug resistance mutation. PLoS One 5: e10992.
    • (2010) PLoS One , vol.5
    • Varghese, V.1    Wang, E.2    Babrzadeh, F.3    Bachmann, M.H.4    Shahriar, R.5
  • 22
    • 77949508899 scopus 로고    scopus 로고
    • HIV drug resistance surveillance using pooled pyrosequencing
    • Ji H, Masse N, Tyler S, Liang B, Li Y, et al. (2010) HIV drug resistance surveillance using pooled pyrosequencing. PLoS One 5: e9263.
    • (2010) PLoS One , vol.5
    • Ji, H.1    Masse, N.2    Tyler, S.3    Liang, B.4    Li, Y.5
  • 23
    • 0024438889 scopus 로고
    • Specificity and mechanism of error-prone replication by human immunodeficiency virus-1 reverse transcriptase
    • Bebenek K, Abbotts J, Roberts JD, Wilson SH, Kunkel TA, (1989) Specificity and mechanism of error-prone replication by human immunodeficiency virus-1 reverse transcriptase. J Biol Chem 264: 16948-16956.
    • (1989) J Biol Chem , vol.264 , pp. 16948-16956
    • Bebenek, K.1    Abbotts, J.2    Roberts, J.D.3    Wilson, S.H.4    Kunkel, T.A.5
  • 25
    • 19944428265 scopus 로고    scopus 로고
    • Multiple, linked human immunodeficiency virus type 1 drug resistance mutations in treatment-experienced patients are missed by standard genotype analysis
    • Palmer S, Kearney M, Maldarelli F, Halvas EK, Bixby CJ, et al. (2005) Multiple, linked human immunodeficiency virus type 1 drug resistance mutations in treatment-experienced patients are missed by standard genotype analysis. J Clin Microbiol 43: 406-413.
    • (2005) J Clin Microbiol , vol.43 , pp. 406-413
    • Palmer, S.1    Kearney, M.2    Maldarelli, F.3    Halvas, E.K.4    Bixby, C.J.5
  • 26
    • 48749086685 scopus 로고    scopus 로고
    • Minority HIV-1 drug resistance mutations are present in antiretroviral treatment-naive populations and associate with reduced treatment efficacy
    • Johnson JA, Li JF, Wei X, Lipscomb J, Irlbeck D, et al. (2008) Minority HIV-1 drug resistance mutations are present in antiretroviral treatment-naive populations and associate with reduced treatment efficacy. PLoS Med 5: e158.
    • (2008) PLoS Med , vol.5
    • Johnson, J.A.1    Li, J.F.2    Wei, X.3    Lipscomb, J.4    Irlbeck, D.5
  • 27
    • 58749087348 scopus 로고    scopus 로고
    • Minority quasispecies of drug-resistant HIV-1 that lead to early therapy failure in treatment-naive and -adherent patients
    • Metzner KJ, Giulieri SG, Knoepfel SA, Rauch P, Burgisser P, et al. (2009) Minority quasispecies of drug-resistant HIV-1 that lead to early therapy failure in treatment-naive and-adherent patients. Clin Infect Dis 48: 239-247.
    • (2009) Clin Infect Dis , vol.48 , pp. 239-247
    • Metzner, K.J.1    Giulieri, S.G.2    Knoepfel, S.A.3    Rauch, P.4    Burgisser, P.5
  • 28
    • 49849095346 scopus 로고    scopus 로고
    • Transmission of HIV-1 minority-resistant variants and response to first-line antiretroviral therapy
    • Peuchant O, Thiebaut R, Capdepont S, Lavignolle-Aurillac V, Neau D, et al. (2008) Transmission of HIV-1 minority-resistant variants and response to first-line antiretroviral therapy. AIDS 22: 1417-1423.
    • (2008) AIDS , vol.22 , pp. 1417-1423
    • Peuchant, O.1    Thiebaut, R.2    Capdepont, S.3    Lavignolle-Aurillac, V.4    Neau, D.5
  • 29
    • 79957970374 scopus 로고    scopus 로고
    • HIV-1 nucleotide mixture detection in the virco((R))TYPE HIV-1 genotyping assay: a comparison between Sanger sequencing and 454 pyrosequencing
    • De Wolf H, Van Marck H, Mostmans W, Thys K, Vandenbroucke I, et al. (2011) HIV-1 nucleotide mixture detection in the virco((R))TYPE HIV-1 genotyping assay: a comparison between Sanger sequencing and 454 pyrosequencing. J Virol Methods 175: 129-132.
    • (2011) J Virol Methods , vol.175 , pp. 129-132
    • de Wolf, H.1    van Marck, H.2    Mostmans, W.3    Thys, K.4    Vandenbroucke, I.5
  • 30
    • 83455246850 scopus 로고    scopus 로고
    • Prevalence and impact of minority variant drug resistance mutations in primary HIV-1 infection
    • Stekler JD, Ellis GM, Carlsson J, Eilers B, Holte S, et al. (2011) Prevalence and impact of minority variant drug resistance mutations in primary HIV-1 infection. PLoS One 6: e28952.
    • (2011) PLoS One , vol.6
    • Stekler, J.D.1    Ellis, G.M.2    Carlsson, J.3    Eilers, B.4    Holte, S.5
  • 31
    • 84155169026 scopus 로고    scopus 로고
    • Relationship between minority nonnucleoside reverse transcriptase inhibitor resistance mutations, adherence, and the risk of virologic failure
    • Li JZ, Paredes R, Ribaudo HJ, Svarovskaia ES, Kozal MJ, et al. (2012) Relationship between minority nonnucleoside reverse transcriptase inhibitor resistance mutations, adherence, and the risk of virologic failure. AIDS 26: 185-192.
    • (2012) AIDS , vol.26 , pp. 185-192
    • Li, J.Z.1    Paredes, R.2    Ribaudo, H.J.3    Svarovskaia, E.S.4    Kozal, M.J.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.