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Volumn 16, Issue 6, 2011, Pages 871-878

Next-generation sequencing of dried blood spot specimens: A novel approach to HIV drug-resistance surveillance

Author keywords

[No Author keywords available]

Indexed keywords

NONNUCLEOSIDE REVERSE TRANSCRIPTASE INHIBITOR; PROTEINASE INHIBITOR; RNA DIRECTED DNA POLYMERASE INHIBITOR;

EID: 80052943349     PISSN: 13596535     EISSN: None     Source Type: Journal    
DOI: 10.3851/IMP1839     Document Type: Article
Times cited : (34)

References (29)
  • 1
    • 77951065603 scopus 로고    scopus 로고
    • Updated December Accessed 30 June 2010. Available from
    • UNAIDS. AIDS epidemic update - December 2009. (Updated December 2009. Accessed 30 June 2010.) Available from http://data.unaids.org/pub/Report/2009/ JC1700-Epi-Update-2009-en.pdf
    • (2009) AIDS Epidemic Update - December 2009
  • 2
    • 47249109877 scopus 로고    scopus 로고
    • The World Health Organization's global strategy for prevention and assessment of HIV drug resistance
    • Bennett DE, Bertagnolio S, Sutherland D, Gilks CF. The World Health Organization's global strategy for prevention and assessment of HIV drug resistance. Antivir Ther 2008; 13 Suppl 2:1-13.
    • (2008) Antivir Ther , vol.13 , Issue.SUPPL. 2 , pp. 1-13
    • Bennett, D.E.1    Bertagnolio, S.2    Sutherland, D.3    Gilks, C.F.4
  • 4
    • 47249105176 scopus 로고    scopus 로고
    • Recommendations for surveillance of transmitted HIV drug resistance in countries scaling up antiretroviral treatment
    • Bennett DE, Myatt M, Bertagnolio S, Sutherland D, Gilks CF. Recommendations for surveillance of transmitted HIV drug resistance in countries scaling up antiretroviral treatment. Antivir Ther 2008; 13 Suppl 2:25-36. (Pubitemid 352019087)
    • (2008) Antiviral Therapy , vol.13 , Issue.SUPPL. 2 , pp. 25-36
    • Bennett, D.E.1    Myatt, M.2    Bertagnolio, S.3    Sutherland, D.4    Gilks, C.F.5
  • 6
    • 69849095336 scopus 로고    scopus 로고
    • Dried fluid spots for HIV type-1 viral load and resistance genotyping: A systematic review
    • Hamers RL, Smit PW, Stevens W, Schuurman R, Rinke de Wit TF. Dried fluid spots for HIV type-1 viral load and resistance genotyping: a systematic review. Antivir Ther 2009; 14:619-629.
    • (2009) Antivir Ther , vol.14 , pp. 619-629
    • Hamers, R.L.1    Smit, P.W.2    Stevens, W.3    Schuurman, R.4    Rinke De Wit, T.F.5
  • 7
    • 77949716973 scopus 로고    scopus 로고
    • Stability of dried blood spots for HIV-1 drug resistance analysis
    • Hearps AC, Ryan CE, Morris LM, et al. Stability of dried blood spots for HIV-1 drug resistance analysis. Curr HIV Res 2010; 8:134-140.
    • (2010) Curr HIV Res , vol.8 , pp. 134-140
    • Hearps, A.C.1    Ryan, C.E.2    Morris, L.M.3
  • 8
    • 78651085389 scopus 로고    scopus 로고
    • HIV type-1 drug resistance testing on dried blood spots is feasible and reliable in patients who fail antiretroviral therapy in rural Tanzania
    • Johannessen A, Holberg-Petersen M, Lovgaarden G, et al. HIV type-1 drug resistance testing on dried blood spots is feasible and reliable in patients who fail antiretroviral therapy in rural Tanzania. Antivir Ther 2010; 15:1003-1009.
    • (2010) Antivir Ther , vol.15 , pp. 1003-1009
    • Johannessen, A.1    Holberg-Petersen, M.2    Lovgaarden, G.3
  • 9
    • 77954244170 scopus 로고    scopus 로고
    • Genotypic testing for HIV-1 drug resistance using dried blood samples
    • Lira R, Valdez-Salazar H, Vazquez-Rosales G, et al. Genotypic testing for HIV-1 drug resistance using dried blood samples. Arch Virol 2010; 155:1117-1125.
    • (2010) Arch Virol , vol.155 , pp. 1117-1125
    • Lira, R.1    Valdez-Salazar, H.2    Vazquez-Rosales, G.3
  • 10
    • 36348939264 scopus 로고    scopus 로고
    • High concordance between HIV-1 drug resistance genotypes generated from plasma and dried blood spots in antiretroviral-experienced patients
    • DOI 10.1097/QAD.0b013e3281c618db, PII 0000203020071130000016
    • Masciotra S, Garrido C, Youngpairoj AS, et al. High concordance between HIV-1 drug resistance genotypes generated from plasma and dried blood spots in antiretroviral-experienced patients. AIDS 2007; 21:2503-2511. (Pubitemid 350145182)
    • (2007) AIDS , vol.21 , Issue.18 , pp. 2503-2511
    • Masciotra, S.1    Garrido, C.2    Youngpairoj, A.S.3    McNulty, A.4    Zahonero, N.5    Corral, A.6    Heneine, W.7    De Mendoza, C.8    Garcia-Lerma, J.G.9
  • 13
    • 53649106195 scopus 로고    scopus 로고
    • Next-generation DNA sequencing
    • Shendure J, Ji H. Next-generation DNA sequencing. Nat Biotechnol 2008; 26:1135-1145.
    • (2008) Nat Biotechnol , vol.26 , pp. 1135-1145
    • Shendure, J.1    Ji, H.2
  • 14
    • 60549086580 scopus 로고    scopus 로고
    • Human gut microbiota in obesity and after gastric bypass
    • Zhang H, DiBaise JK, Zuccolo A, et al. Human gut microbiota in obesity and after gastric bypass. Proc Natl Acad Sci U S A 2009; 106:2365-2370.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 2365-2370
    • Zhang, H.1    DiBaise, J.K.2    Zuccolo, A.3
  • 15
    • 50949131523 scopus 로고    scopus 로고
    • Comparative analysis of human gut microbiota by barcoded pyrosequencing
    • Andersson AF, Lindberg M, Jakobsson H, et al. Comparative analysis of human gut microbiota by barcoded pyrosequencing. PLoS ONE 2008; 3:e2836.
    • (2008) PLoS ONE , vol.3
    • Andersson, A.F.1    Lindberg, M.2    Jakobsson, H.3
  • 16
    • 61849172898 scopus 로고    scopus 로고
    • Low-abundance drug-resistant viral variants in chronically HIV-infected, antiretroviral treatment-naive patients significantly impact treatment outcomes
    • Simen BB, Simons JF, Hullsiek KH, et al. Low-abundance drug-resistant viral variants in chronically HIV-infected, antiretroviral treatment-naive patients significantly impact treatment outcomes. J Infect Dis 2009; 199:693-701.
    • (2009) J Infect Dis , vol.199 , pp. 693-701
    • Simen, B.B.1    Simons, J.F.2    Hullsiek, K.H.3
  • 17
    • 34547643929 scopus 로고    scopus 로고
    • Characterization of mutation spectra with ultra-deep pyrosequencing: Application to HIV-1 drug resistance
    • DOI 10.1101/gr.6468307
    • Wang C, Mitsuya Y, Gharizadeh B, Ronaghi M, Shafer RW. Characterization of mutation spectra with ultra-deep pyrosequencing: application to HIV-1 drug resistance. Genome Res 2007; 17:1195-1201. (Pubitemid 47204863)
    • (2007) Genome Research , vol.17 , Issue.8 , pp. 1195-1201
    • Wang, C.1    Mitsuya, Y.2    Gharizadeh, B.3    Ronaghi, M.4    Shafer, R.W.5
  • 18
    • 34547829263 scopus 로고    scopus 로고
    • DNA bar coding and pyrosequencing to identify rare HIV drug resistance mutations
    • Hoffmann C, Minkah N, Leipzig J, et al. DNA bar coding and pyrosequencing to identify rare HIV drug resistance mutations. Nucleic Acids Res 2007; 35:e91.
    • (2007) Nucleic Acids Res , vol.35
    • Hoffmann, C.1    Minkah, N.2    Leipzig, J.3
  • 19
    • 63549147504 scopus 로고    scopus 로고
    • Massively parallel pyrosequencing highlights minority variants in the HIV-1 env quasispecies deriving from lymphomonocyte subpopulations
    • Rozera G, Abbate I, Bruselles A, et al. Massively parallel pyrosequencing highlights minority variants in the HIV-1 env quasispecies deriving from lymphomonocyte subpopulations. Retrovirology 2009; 6:15.
    • (2009) Retrovirology , vol.6 , pp. 15
    • Rozera, G.1    Abbate, I.2    Bruselles, A.3
  • 20
    • 77949508899 scopus 로고    scopus 로고
    • HIV drug resistance surveillance using pooled pyrosequencing
    • Ji H, Masse N, Tyler S, et al. HIV drug resistance surveillance using pooled pyrosequencing. PLoS ONE 2010; 5:e9263.
    • (2010) PLoS ONE , vol.5
    • Ji, H.1    Masse, N.2    Tyler, S.3
  • 21
    • 84856071426 scopus 로고    scopus 로고
    • Amplicon fusion primer design guidelines for GS FLX Titanium Series Lib-A chemistry
    • Roche. No 0132009. Updated August Accessed November 2009. Available from
    • Roche. 454 Sequencing Technical Bulletin. Amplicon fusion primer design guidelines for GS FLX Titanium Series Lib-A chemistry. No 013-2009. (Updated August 2009. Accessed November 2009.) Available from http://www.igsb.org/ uploads/pdf/TCB-09013-AmpliconFusionPrimerDesignGuidelines.pdf
    • (2009) 454 Sequencing Technical Bulletin
  • 22
    • 84856068972 scopus 로고    scopus 로고
    • Using multiplex identifier (MID) adaptors for the GS FLX Titanium chemistry - Extended MID set
    • Roche. No. 0052009. Updated April Accessed November 2009 . Available from
    • Roche. 454 Sequencing Technical Bulletin. Using multiplex identifier (MID) adaptors for the GS FLX Titanium chemistry - extended MID set. No. 005-2009. (Updated April 2009. Accessed November 2009.) Available from http://www.eurofinsdna.com/fileadmin/PDFs/product-services/TB-0905-Technical- Bulletin-Roche-MID-Adaptors.pdf
    • (2009) 454 Sequencing Technical Bulletin
  • 23
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • DOI 10.1093/molbev/msm092
    • Tamura K, Dudley J, Nei M, Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 2007; 24:1596-1599. (Pubitemid 47236692)
    • (2007) Molecular Biology and Evolution , vol.24 , Issue.8 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 26
    • 48749086685 scopus 로고    scopus 로고
    • Minority HIV-1 drug resistance mutations are present in antiretroviral treatmentnaive populations and associate with reduced treatment efficacy
    • Johnson JA, Li JF, Wei X, et al. Minority HIV-1 drug resistance mutations are present in antiretroviral treatmentnaive populations and associate with reduced treatment efficacy. PLoS Med 2008; 5:e158.
    • (2008) PLoS Med , vol.5
    • Johnson, J.A.1    Li, J.F.2    Wei, X.3
  • 27
    • 76449101531 scopus 로고    scopus 로고
    • Pre-existing minority drug-resistant HIV-1 variants, adherence, and risk of antiretroviral treatment failure
    • Paredes R, Lalama CM, Ribaudo HJ, et al. Pre-existing minority drug-resistant HIV-1 variants, adherence, and risk of antiretroviral treatment failure. J Infect Dis 2010; 201:662-671.
    • (2010) J Infect Dis , vol.201 , pp. 662-671
    • Paredes, R.1    Lalama, C.M.2    Ribaudo, H.J.3
  • 28
    • 76449107778 scopus 로고    scopus 로고
    • Low frequency nonnucleoside reverse-transcriptase inhibitor-resistant variants contribute to failure of efavirenz-containing regimens in treatment-experienced patients
    • Halvas EK, Wiegand A, Boltz VF, et al. Low frequency nonnucleoside reverse-transcriptase inhibitor-resistant variants contribute to failure of efavirenz-containing regimens in treatment-experienced patients. J Infect Dis 2010; 201:672-680.
    • (2010) J Infect Dis , vol.201 , pp. 672-680
    • Halvas, E.K.1    Wiegand, A.2    Boltz, V.F.3
  • 29
    • 58749087348 scopus 로고    scopus 로고
    • Minority quasispecies of drug-resistant HIV-1 that lead to early therapy failure in treatment-naive and -adherent patients
    • Metzner KJ, Giulieri SG, Knoepfel SA, et al. Minority quasispecies of drug-resistant HIV-1 that lead to early therapy failure in treatment-naive and -adherent patients. Clin Infect Dis 2009; 48:239-247.
    • (2009) Clin Infect Dis , vol.48 , pp. 239-247
    • Metzner, K.J.1    Giulieri, S.G.2    Knoepfel, S.A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.