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Volumn , Issue , 2012, Pages

PMS6: A fast algorithm for motif discovery

Author keywords

Planted motif search; string algorithms

Indexed keywords

FAST ALGORITHMS; MOTIF DISCOVERY; MOTIF SEARCH; PREPROCESSING TIME; RUNTIMES; STRING ALGORITHMS;

EID: 84860521791     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/ICCABS.2012.6182627     Document Type: Conference Paper
Times cited : (21)

References (22)
  • 7
    • 80054807741 scopus 로고    scopus 로고
    • PMS5: An efficient exact algorithm for the (l,d) motif finding problem
    • Dinh, H., Rajasekaran, S. and Kundeti, V., PMS5: an efficient exact algorithm for the (l,d) motif finding problem, BMC Bioinformatics, 12:410, 2011.
    • (2011) BMC Bioinformatics , vol.12 , pp. 410
    • Dinh, H.1    Rajasekaran, S.2    Kundeti, V.3
  • 8
    • 0344376570 scopus 로고    scopus 로고
    • Finding composite regulatory patterns in DNA sequences
    • Eskin, E. and Pevzner, P.,Finding composite regulatory patterns in DNA sequences, Bioinformatics, 2002, 354-363.
    • (2002) Bioinformatics , pp. 354-363
    • Eskin, E.1    Pevzner, P.2
  • 10
    • 35248827672 scopus 로고    scopus 로고
    • Toward Optimal Motif Enumeration, Proceedings of Algorithms and Data Structures
    • Evans, P.A and Smith, A., Toward Optimal Motif Enumeration, Proceedings of Algorithms and Data Structures, 8th International Workshop (WADS), 47-58, 2003.
    • (2003) 8th International Workshop (WADS) , pp. 47-58
    • Evans, P.A.1    Smith, A.2
  • 11
    • 0032826179 scopus 로고    scopus 로고
    • Identifying DNA and protein patterns with statistically significant alignments of multiple sequences
    • Hertz, G. and Stormo, G., Identifying DNA and protein patterns with statistically significant alignments of multiple sequences, Bioinformatics,15, 563-577, 1999. (Pubitemid 29462105)
    • (1999) Bioinformatics , vol.15 , Issue.7-8 , pp. 563-577
    • Hertz, G.Z.1    Stormo, G.D.2
  • 13
    • 84860520361 scopus 로고    scopus 로고
    • Finding motifs in the twilight zone
    • Keich, U. and Pevzner, P., Finding motifs in the twilight zone, Bioinformatics, 18,13741381,2002.
    • (2002) Bioinformatics , vol.18 , pp. 13741381
    • Keich, U.1    Pevzner, P.2
  • 14
    • 78049482542 scopus 로고    scopus 로고
    • Efficient motif finding algorithms for large-alphabet inputs
    • Kuksa, P.P. and Pavlovic, V., Efficient motif finding algorithms for large-alphabet inputs, BMC Bioinformatics, 11(Suppl 8):S1, 2010.
    • (2010) BMC Bioinformatics , vol.11 , Issue.SUPPL. 8
    • Kuksa, P.P.1    Pavlovic, V.2
  • 15
    • 0027912333 scopus 로고    scopus 로고
    • Detecting subtle sequence signals: A Gibbs sampling strategy for multiple alignment
    • Lawrence, C.E., Altschul, S.F., Boguski, M.S., Liu, J.S., Neuwald, A.F. and Wootton, J.C., Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment, Science, 262,208-214,2003.
    • (2003) Science , vol.262 , pp. 208-214
    • Lawrence, C.E.1    Altschul, S.F.2    Boguski, M.S.3    Liu, J.S.4    Neuwald, A.F.5    Wootton, J.C.6
  • 18
    • 2342476143 scopus 로고    scopus 로고
    • Finding subtle motifs by branching from the sample strings
    • supplementary edition. Proceedings of the Second European Conference on Computational Biology (ECCB), 2003
    • Price, A., Ramabhadran, S. and Pevzner, P., Finding subtle motifs by branching from the sample strings. Bioinformatics supplementary edition. Proceedings of the Second European Conference on Computational Biology (ECCB), 2003.
    • Bioinformatics
    • Price, A.1    Ramabhadran, S.2    Pevzner, P.3
  • 20
    • 27644521314 scopus 로고    scopus 로고
    • Exact algorithms for planted motif problems
    • DOI 10.1089/cmb.2005.12.1117
    • Rajasekaran, S., Balla, S. and Huang, C.H., Exact algorithms for planted motif challenge problems, Journal of Computational Biology, 12(8),1117-1128, 2005. (Pubitemid 41580026)
    • (2005) Journal of Computational Biology , vol.12 , Issue.8 , pp. 1117-1128
    • Rajasekaran, S.1    Balla, S.2    Huang, C.-H.3
  • 21
    • 79952351466 scopus 로고    scopus 로고
    • A speedup technique for (l, d) motif nding algorithms
    • Rajasekaran S., Dinh, H., A speedup technique for (l, d) motif nding algorithms, BMC Research Notes, 4:54,1-7, 2011.
    • (2011) BMC Research Notes , vol.4
    • Rajasekaran, S.1    Dinh, H.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.