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Volumn 12, Issue 8, 2005, Pages 1117-1128

Exact algorithms for planted motif problems

Author keywords

Exact algorithms; Heuristic algorithms; Motif search; Planted motif problems

Indexed keywords

DIHYDROFOLATE REDUCTASE; DNA; METALLOTHIONEIN; PREPROINSULIN;

EID: 27644521314     PISSN: 10665277     EISSN: None     Source Type: Journal    
DOI: 10.1089/cmb.2005.12.1117     Document Type: Article
Times cited : (75)

References (21)
  • 1
    • 0018454769 scopus 로고
    • Fast probabilistic algorithms for Hamiltonian paths and matchings
    • Angluin, D., and Valiant, L.G. 1979. Fast probabilistic algorithms for Hamiltonian paths and matchings. J. Comp. Syst. Sci. 18, 155-193.
    • (1979) J. Comp. Syst. Sci. , vol.18 , pp. 155-193
    • Angluin, D.1    Valiant, L.G.2
  • 3
    • 0002759539 scopus 로고
    • Unsupervised learning of multiple motifs in biopolymers using expectation maximization
    • Bailey, T.L., and Elkan, C. 1995. Unsupervised learning of multiple motifs in biopolymers using expectation maximization. Machine Learning 21(1-2), 51-80.
    • (1995) Machine Learning , vol.21 , Issue.1-2 , pp. 51-80
    • Bailey, T.L.1    Elkan, C.2
  • 6
    • 0032413411 scopus 로고    scopus 로고
    • Predicting gene regulatory elements in silico on a genomic scale
    • Brazma, A., Jonassen, I., Vilo, J., and Ukkonen, E. 1998. Predicting gene regulatory elements in silico on a genomic scale. Genome Res. 15, 1202-1215.
    • (1998) Genome Res. , vol.15 , pp. 1202-1215
    • Brazma, A.1    Jonassen, I.2    Vilo, J.3    Ukkonen, E.4
  • 8
    • 0000182415 scopus 로고
    • A measure of asymptotic efficiency for tests of a hypothesis based on the sum of observations
    • Chernoff, H. 1952. A measure of asymptotic efficiency for tests of a hypothesis based on the sum of observations. Annals Math. Statistics 23, 493-507.
    • (1952) Annals Math. Statistics , vol.23 , pp. 493-507
    • Chernoff, H.1
  • 9
    • 0344376570 scopus 로고    scopus 로고
    • Finding composite regulatory patterns in DNA sequences
    • Eskin, E., and Pevzner, P. 2002. Finding composite regulatory patterns in DNA sequences. Bioinformatics S1, 354-363.
    • (2002) Bioinformatics , vol.S1 , pp. 354-363
    • Eskin, E.1    Pevzner, P.2
  • 10
    • 0022358896 scopus 로고
    • Rigorous pattern-recognition methods for DNA sequences: Analysis of promoter sequences from Escherichia coli
    • Galas, D.J., Eggert, M., and Waterman, M.S. 1985. Rigorous pattern-recognition methods for DNA sequences: Analysis of promoter sequences from Escherichia coli. J. Mol. Biol. 186(1), 117-128.
    • (1985) J. Mol. Biol. , vol.186 , Issue.1 , pp. 117-128
    • Galas, D.J.1    Eggert, M.2    Waterman, M.S.3
  • 11
    • 0032826179 scopus 로고    scopus 로고
    • Identifying DNA and protein patterns with statistically significant alignments of multiple sequences
    • Hertz, G., and Stormo, G. 1999. Identifying DNA and protein patterns with statistically significant alignments of multiple sequences. Bioinformatics 15, 563-577.
    • (1999) Bioinformatics , vol.15 , pp. 563-577
    • Hertz, G.1    Stormo, G.2
  • 13
    • 0036772332 scopus 로고    scopus 로고
    • Finding motifs in the twilight zone
    • Keich, U., and Pevzner, P. 2002. Finding motifs in the twilight zone. Bioinformatics 18, 1374-1381.
    • (2002) Bioinformatics , vol.18 , pp. 1374-1381
    • Keich, U.1    Pevzner, P.2
  • 14
    • 0027912333 scopus 로고
    • Detecting subtle sequence signals: A Gibbs sampling strategy for multiple alignment
    • Lawrence, C.E., Altschul, S.F., Boguski, M.S., Liu, J.S., Neuwald, A.F., and Wootton, J.C. 1993. Detecting subtle sequence signals: A Gibbs sampling strategy for multiple alignment. Science 262, 208-214.
    • (1993) Science , vol.262 , pp. 208-214
    • Lawrence, C.E.1    Altschul, S.F.2    Boguski, M.S.3    Liu, J.S.4    Neuwald, A.F.5    Wootton, J.C.6
  • 16
    • 27644570295 scopus 로고    scopus 로고
    • Finding subtle motifs by branching from sample strings
    • Price, A., Ramabhadran, S., and Pevzner, P.A. 2003. Finding subtle motifs by branching from sample strings. Bioinformatics 1(1), 1-7.
    • (2003) Bioinformatics , vol.1 , Issue.1 , pp. 1-7
    • Price, A.1    Ramabhadran, S.2    Pevzner, P.A.3
  • 19
    • 0024385974 scopus 로고
    • Methods for discovering novel motifs in nucleic acid sequences
    • Staden, R. 1989. Methods for discovering novel motifs in nucleic acid sequences. Computer Applications in the Biosciences 5(4), 293-298.
    • (1989) Computer Applications in the Biosciences , vol.5 , Issue.4 , pp. 293-298
    • Staden, R.1
  • 20
    • 0033289316 scopus 로고    scopus 로고
    • An exact method for finding short motifs in sequences, with application to the ribosome binding site problem
    • Tompa, M. 1999. An exact method for finding short motifs in sequences, with application to the ribosome binding site problem. Proc. 7th Int. Conf. on Intelligent Systems for Molecular Biology, 262-271.
    • (1999) Proc. 7th Int. Conf. on Intelligent Systems for Molecular Biology , pp. 262-271
    • Tompa, M.1
  • 21
    • 0032483307 scopus 로고    scopus 로고
    • Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies
    • van Helden, J., Andre, B., and Collado-Vides, J. 1998. Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies. J. Mol. Biol. 281(5), 827-842.
    • (1998) J. Mol. Biol. , vol.281 , Issue.5 , pp. 827-842
    • Helden, J.1    Andre, B.2    Collado-Vides, J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.