An FT-IR study on packing defects in mixed β-aggregates of poly(l -glutamic acid) and poly(d -glutamic acid): A high-pressure rescue from a Kinetic trap

Journal of Physical Chemistry B

Volumn 116, Issue 17, 2012, Pages 5172-5178

  Yamaoki, Yudai ^a,b   Imamura, Hiroshi ^b   Fulara, Aleksandra ^a   Woíjcik, Sławomir ^a   Bozzycki, Łukasz ^c,d   Kato, Minoru ^b   Keiderling, Timothy A ^e   Dzwolak, Wojciech ^a  

^a UNIVERSITY OF WARSAW   (Poland)

^b RITSUMEIKAN UNIVERSITY   (Japan)

^c WARSAW UNIVERSITY OF LIFE SCIENCES   (Poland)

^d INSTITUTE OF HIGH PRESSURE PHYSICS   (Poland)

^e UNIVERSITY OF ILLINOIS AT CHICAGO   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMIDES; AMINO ACIDS; DEFECTS; GLYCOPROTEINS; HYDROGEN BONDS; SCANNING ELECTRON MICROSCOPY;

AMIDE I; AMYLOID FIBRIL; AMYLOID-LIKE FIBRIL; BIFURCATED HYDROGEN BONDS; COAGGREGATION; FAVORABLE CONDITIONS; FLUORESCENCE INTENSITIES; FT-IR STUDY; GLUTAMIC ACID; HIGH PRESSURE; KINETIC TRAPS; MAIN CHAINS; PACKING DEFECT; POLY (LGLUTAMIC ACID); QUATERNARY STRUCTURE; RACEMIC MIXTURES; RED-SHIFTED; SCANNING ELECTRON MICROSCOPY IMAGE; SIDE-CHAINS; STRUCTURAL DEFECT; THIOFLAVIN; VIBRATIONAL BANDS; VOID VOLUME;

AGGREGATES;

EID: 84860498820     PISSN: 15206106     EISSN: 15205207     Source Type: Journal    
DOI: 10.1021/jp2125685     Document Type: Article

References (45)

1. Chiti, F.; Dobson, C. M. Annu. Rev. Biochem. 2006, 75, 333
2. Fändrich, M.; Fletcher, M. A.; Dobson, C. M. Nature 2001, 410, 165
3. Chiti, F.; Webster, P.; Taddei, N.; Clark, A.; Stefani, M.; Ramponi, G.; Dobson, C. M. Proc. Natl. Acad. Sci. U. S. A. 1999, 96, 3590
4. Herczenik, E.; Gebbink, M. F. B. G. FASEB J. 2008, 22, 2115
5. Smith, A. M.; Scheibel, T. Macromol. Chem. Phys. 2010, 211, 127
6. Maji, S. K.; Perrin, M. H.; Sawaya, M. R.; Jessberger, S.; Vadodaria, K.; Rissman, R. A.; Singru, P. S.; Nilsson, K. P. R.; Simon, R.; Schubert, D.; Eisenberg, D.; Rivier, J.; Sawchenko, P.; Vale, W.; Riek, R. Science 2009, 325, 328
7. Fowler, D. M.; Koulov, A. V.; Alory-Jost, C.; Marks, M. S.; Balch, W. E.; Kelly, J. W. PLoS Biol. 2006, 4, 0100
8. Scheibel, T.; Parthasarathy, R.; Sawicki, G.; Lin, X.-M.; Jaeger, H.; Lindquist, S. L. Proc. Natl. Acad. Sci. U. S. A. 2003, 100, 4527
9. Reches, M.; Gazit, E. Science 2003, 300, 625
10. Wojcik, S.; Babenko, V.; Dzwolak, W. Langmuir 2010, 26, 18303
11. MacPhee, C. E.; Woolfson, D. N. Curr. Opin. Solid State Mater. Sci. 2004, 8, 141
12. Fändrich, M.; Dobson, C. M. EMBO J. 2002, 21, 5682
13. Dzwolak, W.; Ravindra, R.; Nicolini, C.; Jansen, R.; Winter, R. J. Am. Chem. Soc. 2004, 126, 3762
14. Guo, Y.; Ma, Y.; Xu, L.; Li, J.; Yang, W. J. Phys. Chem. C 2007, 111, 9172
15. Guan, J.; Li, J.; Guo, Y.; Yang, W. Langmuir 2009, 25, 2679
16. Itoh, K.; Foxman, B. M.; Fasman, G. D. Biopolymers 1976, 15, 419
17. Fulara, A.; Dzwolak, W. J. Phys. Chem. B 2010, 114, 8278
18. Fulara, A.; Lakhani, A.; Woíjcik, S.; Nieznaska, H.; Keiderling, T. A.; Dzwolak, W. J. Phys. Chem. B 2011, 115, 11010
19. Foguel, D.; Suarez, M. C.; Ferrao-Gonzales, A. D.; Porto, T. C. R.; Palmieri, L.; Einsiedler, C. M.; Andrade, L. R.; Lashuel, H. A.; Lansbury, P. T.; Kelly, J. W.; Silva, J. L. Proc. Natl. Acad. Sci. U. S. A. 2003, 100, 9831
20. Dirix, C.; Meersman, F.; MacPhee, C. E.; Dobson, C. M.; Heremans, K. J. Mol. Biol. 2005, 347, 903
21. Mishra, R.; Winter, R. Angew. Chem., Int. Ed. 2008, 47, 6518
22. Radovan, D.; Smirnovas, V.; Winter, R. Biochemistry 2008, 47, 6352
23. Dubois, J.; Ismail, A. A.; Chan, S. L.; Ali-Khan, Z. Scand. J. Immunol. 1999, 49, 376
24. Brown, P.; Meyer, R.; Cardone, F.; Pocchiari, M. Proc. Natl. Acad. Sci. U. S. A. 2003, 100, 6093
25. Moustaine, D. E.; Perrier, V.; Van Ba, S. A.-T.; Meersman, F.; Ostapchenko, V. G.; Baskakov, I. V.; Lange, R.; Torrent, J. J. Biol. Chem. 2011, 286, 13448
26. Jansen, R.; Grudzielanek, S.; Dzwolak, W.; Winter, R. J. Mol. Biol. 2004, 338, 203
27. Knowles, T. P. J.; Buehler, M. J. Nat. Nanotechnol. 2011, 6, 469
28. Dzwolak, W.; Loksztejn, A.; Smirnovas, V. Biochemistry 2006, 45, 8143
29. Dzwolak, W.; Kato, M.; Taniguchi, Y. Biochim. Biophys. Acta 2002, 1595, 131
30. Imamura, H.; Isogai, Y.; Takekiyo, T.; Kato, M. Biochim. Biophys. Acta 2010, 1804, 193
31. Imamura, H.; Kato, M. Proteins 2009, 75, 911
32. Segawa, Y.; Imamura, H.; Shimizu, A.; Kato, M. J. Phys. Conf. Ser. 2010, 215, 012154
33. Groenning, M. J. Chem. Biol. 2010, 3, 1
34. Stsiapura, V. I.; Maskevich, A. A.; Kuzmitsky, V. A.; Turoverov, K. K.; Kuznetsova, I. M. J. Phys. Chem. A 2007, 111, 4829
35. Maskevich, A. A.; Stsiapura, V. I.; Kuzmitsky, V. A.; Kuznetsova, I. M.; Povarova, O. I.; Uversky, V. N.; Turoverov, K. K. J. Proteome Res. 2007, 6, 1392
36. Dzwolak, W.; Pecul, M. FEBS Lett. 2005, 579, 6601
37. Babenko, V.; Dzwolak, W. Chem. Commun. 2011, 47, 10686
38. Gilmanshin, R.; Williams, S.; Callender, R. H.; Woodruff, W. H.; Dyer, R. B. Biochemistry 1997, 36, 15006
39. Ferrão-Gonzales, A. O.; Souto, S. O.; Silva, J. L.; Foguel, D. Proc. Natl. Acad. Sci. U. S. A. 2000, 97, 6445
40. Smeller, L.; Rubens, P.; Heremans, K. Biochemistry 1999, 38, 3816
41. Meersman, F.; Dobson, C. M.; Heremans, K. Chem. Soc. Rev. 2006, 35, 908
42. Gruzielanek, S.; Zhai, Y.; Winter, R. ChemPhysChem 2010, 11, 2016
43. Kamatari, Y. O.; Yokoyama, S.; Tachibana, H.; Akasaka, K. J. Mol. Biol. 2005, 349, 916
44. Akasaka, K.; Latif, A. R. A.; Nakamura, A.; Matsuo, K.; Tachibana, H.; Gekko, K. Biochemistry 2007, 46, 10444
45. Foguel, D.; Silva, J. L. Biochemistry 2004, 43, 11361