Wolbachia and DNA barcoding insects: Patterns, potential, and problems

PLoS ONE

Volumn 7, Issue 5, 2012, Pages

  Smith, M Alex ^a   Bertrand, Claudia ^a   Crosby, Kate ^b   Eveleigh, Eldon S ^c   Fernandez Triana, Jose ^a   Fisher, Brian L ^d   Gibbs, Jason ^e   Hajibabaei, Mehrdad ^a   Hallwachs, Winnie ^f   Hind, Katharine ^g   Hrcek, Jan ^h   Huang, Da Wei ⁱ   Janda, Milan ^j   Janzen, Daniel H ^f   Li, Yanwei ⁱ   Miller, Scott E ^j   Packer, Laurence ^k   Quicke, Donald ^l,m   Ratnasingham, Sujeevan ^a   Rodriguez, Josephine ⁿ   Rougerie, Rodolphe ^o   Shaw, Mark R ^p   Sheffield, Cory ^k   Stahlhut, Julie K ^a   Steinke, Dirk ^a   Whitfield, James ^q   Wood, Monty ^r   Zhou, Xin ^s   more..

^a UNIVERSITY OF GUELPH   (Canada)

^b DALHOUSIE UNIVERSITY   (Canada)

^c LAURENTIAN FORESTRY CENTRE   (Canada)

^d CALIFORNIA ACADEMY OF SCIENCES   (United States)

^e Department of Obstetrics Gynecology   (United States)

^f UNIVERSITY OF PENNSYLVANIA   (United States)

^g UNIVERSITY OF NEW BRUNSWICK   (Canada)

^h UNIVERSITY OF SOUTH BOHEMIA   (Czech Republic)

ⁱ INSTITUTE OF ZOOLOGY   (China)

^j HARVARD UNIVERSITY   (United States)

^k YORK UNIVERSITY   (Canada)

^l IMPERIAL COLLEGE LONDON   (United Kingdom)

^m DEPARTMENT OF LIFE SCIENCES   (United Kingdom)

ⁿ NATIONAL CENTER FOR ECOLOGICAL ANALYSIS AND SYNTHESIS   (United States)

^o UNIVERSITÉ DE ROUEN   (France)

^p DEPARTMENT OF NATURAL SCIENCES   (United Kingdom)

^q UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

^r Arachnids and Nematodes   (Canada)

^s BGI SHENZHEN   (China)

more..

Author keywords

[No Author keywords available]

Indexed keywords

MITOCHONDRIAL DNA;

ACCURACY; AMPLICON; ARTICLE; BACTERIAL VIRULENCE; CONTROLLED STUDY; DNA BARCODING; DNA LIBRARY; ENDOSYMBIONT; INSECT; MULTILOCUS SEQUENCE TYPING; NONHUMAN; PHYLOGENY; POLYMERASE CHAIN REACTION; SPECIES IDENTIFICATION; WOLBACHIA; ANIMAL; CLASSIFICATION; GENETICS; METHODOLOGY; MICROBIOLOGY;

BACTERIA (MICROORGANISMS); EUKARYOTA; HEMIPTERA; HEXAPODA; WOLBACHIA;

ANIMALS; DNA BARCODING, TAXONOMIC; DNA, MITOCHONDRIAL; INSECTS; PHYLOGENY; WOLBACHIA;

EID: 84860442497     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0036514     Document Type: Article

References (47)

1. Janzen DH, Hallwachs W, Blandin P, Burns JM, Cadiou JM, et al. (2009) Integration of DNA barcoding into an ongoing inventory of complex tropical biodiversity. Molecular Ecology Resources 9: 1-26.
2. Rasmussen RS, Morrissey MT, Hebert PDN, (2009) DNA Barcoding of Commercially Important Salmon and Trout Species (Oncorhynchus and Salmo) from North America. Journal of Agricultural and Food Chemistry 57: 8379-8385.
3. Swartz ER, Mwale M, Hanner R, (2008) A role for barcoding in the study of African fish diversity and conservation: review article. South African Journal of Science 104: 293-298.
4. Fisher BL, Smith MA, (2008) A revision of Malagasy species of Anochetus Mayr and Odontomachus Latreille (Hymenoptera: Formicidae). PLoS ONE 3: e1787.
5. Smith MA, Fernandez-Triana J, Roughley R, Hebert PDN, (2009) DNA barcode accumulation curves for understudied taxa and areas. Molecular Ecology Resources 9: 208-216.
6. Steinke D, Zemlak TS, Hebert PDN, (2009) Barcoding Nemo: DNA-Based Identifications for the Ornamental Fish Trade. PLoS One 4: Article No.: e6300.
7. Smith MA, Fisher B, (2009) Invasions, DNA barcodes, and rapid biodiversity assessment using ants of Mauritius. Frontiers in Zoology 6: 31.
8. Virgilio M, Backeljau T, Nevado B, De Meyer M, (2010) Comparative performances of DNA barcoding across insect orders. BMC Bioinformatics 11: 206.
9. Schmidt BC, (2009) Taxonomic revision of the genus Grammia Rambur (Lepidoptera: Noctuidae: Arctiinae). Zoological Journal of the Linnean Society 156: 507-597.
10. Smith MA, Rodriguez JJ, Whitfield JB, Deans AR, Janzen DH, et al. (2008) Extreme diversity of tropical parasitoid wasps exposed by iterative integration of natural history, DNA barcoding, morphology, and collections. Proc Natl Acad Sci U S A 105: 12359-12364.
11. Smith MA, Wood DM, Janzen DH, Hallwachs W, Hebert PDN, (2007) DNA barcodes affirm that 16 species of apparently generalist tropical parasitoid flies (Diptera, Tachinidae) are not all generalists. Proc Natl Acad Sci U S A 104: 4967-4972.
12. Whitworth TL, Dawson RD, Magalon H, Baudry E, (2007) DNA barcoding cannot reliably identify species of the blowfly genus Protocalliphora (Diptera: Calliphoridae). Proceedings of the Royal Society B-Biological Sciences 274: 1731-1739.
13. Linares MC, Soto-Calderon ID, Lees DC, Anthony NM, (2009) High mitochondrial diversity in geographically widespread butterflies of Madagascar: A test of the DNA barcoding approach. Molecular Phylogenetics and Evolution 50: 485-495.
14. Gompert Z, Forister ML, Fordyce JA, Nice CC, (2008) Widespread mito-nuclear discordance with evidence for introgressive hybridization and selective sweeps in Lycaeides. Molecular Ecology 17: 5231-5244.
15. Nice CC, Gompert Z, Forister ML, Fordyce JA, (2009) An unseen foe in arthropod conservation efforts: The case of Wolbachia infections in the Karner blue butterfly. Biological Conservation 142: 3137-3146.
16. Engelstadter J, Hurst GD, (2010) The Ecology and Evolution of Microbes that Manipulate Host Reproduction. Annual Review of Ecology and Systematics 40: 127-149.
17. Hilgenboecker K, Hammerstein P, Schlattmann P, Telschow A, Werren JH, (2008) How many species are infected with Wolbachia?- a statistical analysis of current data. Fems Microbiology Letters 281: 215-220.
18. Hurst GDD, Jiggins FM, (2005) Problems with mitochondrial DNA as a marker in population, phylogeographic and phylogenetic studies: the effects of inherited symbionts. Proceedings of the Royal Society B: Biological Sciences 272: 25-1534.
19. Raychoudhury R, Grillenberger BK, Gadau J, Bijlsma R, van de Zande L, et al. (2010) Phylogeography of Nasonia vitripennis (Hymenoptera) indicates a mitochondrial-Wolbachia sweep in North America. Heredity 104: 318-326.
20. Raychoudhury R, Baldo L, Oliveira D, Werren JH, (2009) Modes of acquisition of Wolbachia: Horizontal transfer, hybrid introgression and codivergence in the Nasonia species complex. Evolution 63: 165-183.
21. Dobson SL, Bourtzis K, Braig HR, Jones BF, Zhou WG, et al. (1999) Wolbachia infections are distributed throughout insect somatic and germ line tissues. Insect Biochemistry and Molecular Biology 29: 153-160.
22. Braig HR, Zhou W, Dobson SL, O'Neill SL, (1998) Cloning and characterization of a gene encoding the major surface protein of the bacterial endosymbiont Wolbachia pipientis. Journal of Bacteriology 180: 2373-2378.
23. Smith MA, Woodley NE, Janzen DH, Hallwachs W, Hebert PDN, (2006) DNA barcodes reveal cryptic host-specificity within the presumed polyphagous members of a genus of parasitoid flies (Diptera: Tachinidae). Proc Natl Acad Sci U S A 103: 3657-3662.
24. Ratnasingham S, Hebert PDN, (2007) BOLD: The Barcode of Life Data System. Molecular Ecology Notes 7: 355-364.
25. Fernandez Triana J, Smith MA, Boudreault C, Goulet H, Hebert PDN, et al. (2011) A poorly known high-latitude parasitoid wasp community: unexpected diversity and dramatic changes through time. PLoS ONE 6: e23719.
26. Baldo L, Dunning Hotopp JC, Jolley KA, Bordenstein SR, Biber SA, et al. (2006) Multilocus Sequence Typing System for the Endosymbiont Wolbachia pipientis. Appl Environ Microbiol 72: 7098-7110.
27. Meusnier I, Singer GAC, Landry JF, Hickey DA, Hebert PDN, et al. (2008) A universal DNA mini-barcode for biodiversity analysis. BMC Genomics 9: 214.
28. Hebert PDN, Cywinska A, Ball SL, DeWaard JR, (2003) Biological identifications through DNA barcodes. Proc R Soc Lond B Biol Sci 270: 313-321.
29. Hebert PDN, Penton EH, Burns JM, Janzen DH, Hallwachs W, (2004) Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator. Proceedings of the National Academy of Sciences of the United States of America 101: 14812-14817.
30. Ivanova NV, Dewaard JR, Hebert PDN, (2006) An inexpensive, automation-friendly protocol for recovering high-quality DNA. Molecular Ecology Notes 6: 998-1002.
31. Johnstone RA, Hurst GDD, (1996) Maternally inherited male-killing microorganisms may confound interpretation of mitochondrial DNA variability. Biological Journal of the Linnean Society 58: 453-470.
32. Jiggins FM, (2003) Male-killing Wolbachia and mitochondrial DNA: Selective sweeps, hybrid introgression and parasite population dynamics. Genetics 164: 5-12.
33. Ballard JWO, (2000) When one is not enough: introgression of mitochondrial DNA in Drosophila. Molecular Biology and Evolution 17: 1126-1130.
34. Shoemaker DD, Katju V, Jaenike J, (1999) Wolbachia and the evolution of reproductive isolation between Drosophilla recens and Drosophila subquinaria. Evolution 53: 1157-1164.
35. Sun X-J, Xiao J-H, Cook J, Feng G, Huang D-W, (2011) Comparisons of host mitochondrial, nuclear and endosymbiont bacterial genes reveal cryptic fig wasp species and the effects of Wolbachia on host mtDNA evolution and diversity. BMC Evolutionary Biology 11: 86.
36. Weinert LA, Tinsley MC, Temperley M, Jiggins FM, (2007) Are we underestimating the diversity and incidence of insect bacterial symbionts? A case study in ladybird beetles. Biology Letters 3: 678-681.
37. Chen LL, Cook JM, Xiao H, Hu HY, Niu LM, et al. (2010) High incidences and similar patterns of Wolbachia infection in fig wasp communities from three different continents. Insect Science 17: 101-111.
38. Fernandez Triana J, Smith MA, Boudreault C, Goulet H, Hebert PDN, et al. (in review) A poorly known high-latitude parasitoid wasp community: unexpected diversity and dramatic changes through time. PLoS ONE.
39. Baldo L, Werren JH, (2007) Revisiting Wolbachia supergroup typing based on WSP: Spurious lineages and discordance with MLST. Current Microbiology 55: 81-87.
40. Russell JA, Goldman-Huertas B, Moreau CS, Laura B, Stahlhut JK, et al. (2009) Specialization and Geographic Isolation Among Wolbachia Symbionts from Ants and Lycaenid Butterflies. Evolution 63: 624-640.
41. Ferrari J, Vavre F, (2011) Bacterial symbionts in insects or the story of communities affecting communities. Philos Trans R Soc Lond B Biol Sci 366: 1389-1400.
42. Wenseleers T, Ito F, van Borm S, Huybrechts R, Volckaert F, et al. (1998) Widespread occurrence of the micro-organism Wolbachia in ants. Proc R Soc London Ser B Biol Sci 265: 1447-1452.
43. Grasso DA, Wenseleers T, Mori A, Le Moli F, Billen J, (2000) Thelytokous worker reproduction and lack of Wolbachia infection in the harvesting ant Messor capitatus. Ethology Ecology & Evolution 12: 309-314.
44. Excoffier L, Laval G, Schneider S, (2005) Arlequin ver. 3.0: An integrated software package for population genetics data analysis. Evol Bioinform Online 1: 47-50.
45. Rozas J, Jc SD, X M, (2003) DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19: 2496-2497.
46. Smith MA, Eveleigh ES, McCann KS, Merilo MT, McCarthy PC, et al. (2011) Barcoding a quantified food web: crypsis, concepts, ecology and hypotheses. PLoS ONE 6: e14424.
47. Li YW, Zhou X, Feng G, Hu HY, Niu LM, et al. (2009) COI and ITS2 sequences delimit species, reveal cryptic taxa and host specificity of fig-associated Sycophila (Hymenoptera, Eurytomidae). Molecular Ecology Resources 10: 31-40.