메뉴 건너뛰기




Volumn 49, Issue 3, 2011, Pages 203-212

Application of DNA barcodes in Hedyotis L. (Spermacoceae, Rubiaceae)

Author keywords

DNA barcode; Hedyotis; Molecular identification; Rubiaceae; Taxonomy

Indexed keywords

HEDYOTIS; RUBIACEAE; SPERMACOCEAE;

EID: 84860418521     PISSN: 16744918     EISSN: 17596831     Source Type: Journal    
DOI: 10.1111/j.1759-6831.2011.00130.x     Document Type: Article
Times cited : (44)

References (51)
  • 1
    • 0036263056 scopus 로고    scopus 로고
    • Relationships, circumscription, and biogeography of Arcytophyllum (Rubiaceae) based on evidence from cpDNA
    • Andersson L, Rova JHE, Guarin FA. 2002. Relationships, circumscription, and biogeography of Arcytophyllum (Rubiaceae) based on evidence from cpDNA. Brittonia 54: 40-49. (Pubitemid 34577514)
    • (2002) Brittonia , vol.54 , Issue.1 , pp. 40-49
    • Andersson, L.1    Rova, J.H.E.2    Guarin, F.A.3
  • 3
    • 84989994518 scopus 로고
    • Remarks on the position, the delimitation and the subdivision of the Rubiaceae
    • Bremekamp CEB. 1966. Remarks on the position, the delimitation and the subdivision of the Rubiaceae. Acta Botanica Neerlandica 15: 1-33.
    • (1966) Acta Botanica Neerlandica , vol.15 , pp. 1-33
    • Bremekamp, C.E.B.1
  • 4
    • 69149084832 scopus 로고    scopus 로고
    • A DNA barcode for land plants
    • CBOL Plant Working Group
    • CBOL Plant Working Group. 2009. A DNA barcode for land plants. Proceedings of the National Academy of Sciences USA 106: 12794-12797.
    • (2009) Proceedings of the National Academy of Sciences USA , vol.106 , pp. 12794-12797
  • 6
    • 80051859781 scopus 로고    scopus 로고
    • Notes on the identity of Hedyotis yangchunensis (Rubiaceae) in Hong Kong
    • Chen T. 2008. Notes on the identity of Hedyotis yangchunensis (Rubiaceae) in Hong Kong. Harvard Papers in Botany 13: 283-288.
    • (2008) Harvard Papers in Botany , vol.13 , pp. 283-288
    • Chen, T.1
  • 7
    • 33749562542 scopus 로고    scopus 로고
    • 300,000 Species to identify: Problems, progress, and prospects in DNA barcoding of land plants
    • Cowan RS, Chase MW, Kress WJ, Savolainen V. 2006. 300, 000 species to identify: problems, progress, and prospects in DNA barcoding of land plants. Taxon 55: 611-616. (Pubitemid 44534837)
    • (2006) Taxon , vol.55 , Issue.3 , pp. 611-616
    • Cowan, R.S.1    Chase, M.W.2    Kress, W.J.3    Savolainen, V.4
  • 8
    • 0036188663 scopus 로고    scopus 로고
    • Molecular phylogenetics of Caryophyllales based on nuclear 18S rDNA and plastid rbcL, atpB, and matK DNA sequences
    • Cuenoud P, Savolainen V, Chatrou LW, Powell M, Grayer RJ, Chase MW. 2002. Molecular phylogenetics of the Caryophyllales based on 18SrDNA, rbcL, atpB and matK sequences. American Journal of Botany 89: 132-144. (Pubitemid 34196580)
    • (2002) American Journal of Botany , vol.89 , Issue.1 , pp. 132-144
    • Cuenoud, P.1    Savolainen, V.2    Chatrou, L.W.3    Powell, M.4    Grayer, R.J.5    Chase, M.W.6
  • 10
    • 57749196958 scopus 로고    scopus 로고
    • DNA barcoding of a large genus, Aspalathus L. (Fabaceae)
    • Edwards D, Horn A, Taylor D, Savolainen V, Hawkins JA. 2008. DNA barcoding of a large genus, Aspalathus L. (Fabaceae). Taxon 57: 1317-1327.
    • (2008) Taxon , vol.57 , pp. 1317-1327
    • Edwards, D.1    Horn, A.2    Taylor, D.3    Savolainen, V.4    Hawkins, J.A.5
  • 11
    • 0031008892 scopus 로고    scopus 로고
    • Taxonomic affinities of Medusagyne oppositifolia (Medusagynaceae)
    • Fay MF, Swensen SM, Chase MW. 1997. Taxonomic affinities of Medusagyne oppositifolia (Medusagynaceae). Kew Bulletin 52: 111-120. (Pubitemid 27205072)
    • (1997) Kew Bulletin , vol.52 , Issue.1 , pp. 111-120
    • Fay, M.F.1    Swensen, S.M.2    Chase, M.W.3
  • 12
    • 0003290043 scopus 로고
    • The Polynesian species of Hedyotis (Rubiaceae)
    • Fosberg FR. 1943. The Polynesian species of Hedyotis (Rubiaceae). Bernice P. Bishop Museum Bulletin 147: 1-102.
    • (1943) Bernice P. Bishop Museum Bulletin , vol.147 , pp. 1-102
    • Fosberg, F.R.1
  • 13
    • 0013214084 scopus 로고
    • Studies in indo-pacific rubiaceae
    • Fosberg FR, Sachet MH. 1991. Studies in Indo-Pacific Rubiaceae. Allertonia 6: 191-278.
    • (1991) Allertonia , vol.6 , pp. 191-278
    • Fosberg, F.R.1    Sachet, M.H.2
  • 18
    • 56549101328 scopus 로고    scopus 로고
    • The phylogenetic utility of plastid and nuclearDNAmarkers and the phylogeny of the Rubiaceae tribe Spermacoceae
    • Kärehed J, Groeninckx I, Dessein S, Motley T, Bremer B. 2008. The phylogenetic utility of plastid and nuclearDNAmarkers and the phylogeny of the Rubiaceae tribe Spermacoceae. Molecular Phylogenetics and Evolution 49: 843-866.
    • (2008) Molecular Phylogenetics and Evolution , vol.49 , pp. 843-866
    • Kärehed, J.1    Groeninckx, I.2    Dessein, S.3    Motley, T.4    Bremer, B.5
  • 19
    • 45949107473 scopus 로고    scopus 로고
    • Recent developments in the MAFFT multiple sequence alignment program
    • DOI 10.1093/bib/bbn013, Special Issue: Critical Technologies for Bioinformatics
    • Katoh K, Toh H. 2008a. Recent developments in the MAFFT multiple sequence alignment program. Briefings in Bioinformatics 9: 286-298. (Pubitemid 351890825)
    • (2008) Briefings in Bioinformatics , vol.9 , Issue.4 , pp. 286-298
    • Katoh, K.1    Toh, H.2
  • 20
    • 44149125756 scopus 로고    scopus 로고
    • Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework
    • Katoh K, Toh H. 2008b. Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework. BMC Bioinformatics 9: 212.
    • (2008) BMC Bioinformatics , vol.9 , pp. 212
    • Katoh, K.1    Toh, H.2
  • 21
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • DOI 10.1007/BF01731581
    • Kimura M. 1980. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution 16: 111-120. (Pubitemid 11166431)
    • (1980) Journal of Molecular Evolution , vol.16 , Issue.2 , pp. 111-120
    • Kimura, M.1
  • 22
    • 0346022566 scopus 로고    scopus 로고
    • Hedyotis linn
    • Beijing: Science Press
    • Ko W-C. 1999. Hedyotis Linn. In: Flora Reipublicae Popularis Sinicae. Beijing: Science Press. 71: 26-77.
    • (1999) Flora Reipublicae Popularis Sinicae , vol.71 , pp. 26-77
    • Ko, W.-C.1
  • 24
    • 77951631088 scopus 로고    scopus 로고
    • A two-locus global DNA barcode for land plants: The coding rbcL gene complements the noncoding trnH-psbA spacer region
    • Kress WJ, Erickson DL. 2007. A two-locus global DNA barcode for land plants: the coding rbcL gene complements the noncoding trnH-psbA spacer region. PloS One 2: e508.
    • (2007) PloS One , vol.2
    • Kress, W.J.1    Erickson, D.L.2
  • 26
    • 70449084691 scopus 로고    scopus 로고
    • Authentication of the anti-tumor herb Baihuasheshecao with bioactive marker compounds and molecular sequences
    • Li M, Jiang R-W, Hon P-M, Cheng L, Li L-L, Zhou J-R, Shaw P-C, But PPH. 2010. Authentication of the anti-tumor herb Baihuasheshecao with bioactive marker compounds and molecular sequences. Food Chemistry 119: 1239-1245.
    • (2010) Food Chemistry , vol.119 , pp. 1239-1245
    • Li, M.1    Jiang, R.-W.2    Hon, P.-M.3    Cheng, L.4    Li, L.-L.5    Zhou, J.-R.6    Shaw, P.-C.7    But, P.P.H.8
  • 27
    • 4143090461 scopus 로고    scopus 로고
    • Antioxidant activity of extracts of Peh-Hue-Juwa-Chi-Cao in a cell free system
    • DOI 10.1142/S0192415X04001990
    • Lin C-C, Ng L-T, Yang J-J. 2004. Antioxidant activity of extracts of peh-huejuwa-chi-cao in a cell free system. American Journal of Chinese Medicine 32: 339-349. (Pubitemid 39089160)
    • (2004) American Journal of Chinese Medicine , vol.32 , Issue.3 , pp. 339-349
    • Lin, C.-C.1    Ng, L.-T.2    Yang, J.-J.3
  • 28
    • 12344325917 scopus 로고    scopus 로고
    • Molecular evolution and phylogenetic utility of the petD group II intron: A case study in basal angiosperms
    • DOI 10.1093/molbev/msi019
    • Löhne C, Borsch T. 2005. Molecular evolution and phylogenetic utility of the petD group II intron: a case study in basal angiosperms. Molecular Biology and Evolution 22: 317-332. (Pubitemid 40130199)
    • (2005) Molecular Biology and Evolution , vol.22 , Issue.2 , pp. 317-332
    • Lohne, C.1    Borsch, T.2
  • 30
    • 56549110969 scopus 로고
    • Hedyotis Linnaeus versus Oldenlandia Linnaeus and the status of Hedyotis lancea Thunberg in relation to H. consanguinea Hance
    • Merrill ED, Metcalf FP. 1942. Hedyotis Linnaeus versus Oldenlandia Linnaeus and the status of Hedyotis lancea Thunberg in relation to H. consanguinea Hance. Journal of the Arnold Arboretum 23: 226-230.
    • (1942) Journal of the Arnold Arboretum , vol.23 , pp. 226-230
    • Merrill, E.D.1    Metcalf, F.P.2
  • 31
    • 22944482184 scopus 로고    scopus 로고
    • SeqState: Primer design and sequence statistics for phylogenetic DNA datasets
    • DOI 10.2165/00822942-200504010-00008
    • Müller K. 2005. SeqState: primer design and sequence statistics for phylogenetic DNA datasets. Applied Bioinformatics 4: 65-69. (Pubitemid 41043903)
    • (2005) Applied Bioinformatics , vol.4 , Issue.1 , pp. 65-69
    • Muller, K.1
  • 32
    • 0026282569 scopus 로고
    • Polymorphic taxa, missing values and cladistic analysis
    • Nixon KC, Davis JI. 1991. Polymorphic taxa, missing values and cladistic analysis. Cladistics 7: 233-241.
    • (1991) Cladistics , vol.7 , pp. 233-241
    • Nixon, K.C.1    Davis, J.I.2
  • 33
  • 34
    • 0034847822 scopus 로고    scopus 로고
    • Inferring the history of the polyploid Silene aegaea (Caryophyllaceae) using plastid and homoeologous nuclear DNA sequences
    • DOI 10.1006/mpev.2001.0977
    • Popp M, Oxelman B. 2001. Inferring the history of the polyploid Silene aegaea (Caryophyllaceae) using plastid and homoeologous nuclear DNA sequences. Molecular Phylogenetics and Evolution 20: 474-481. (Pubitemid 32835892)
    • (2001) Molecular Phylogenetics and Evolution , vol.20 , Issue.3 , pp. 474-481
    • Popp, M.1    Oxelman, B.2
  • 35
    • 77954694153 scopus 로고    scopus 로고
    • Species identification of Alnus (Betulaceae) using nrDNA and cpDNA genetic markers
    • Ren B-Q, Xiang X-G, Chen Z-D. 2010. Species identification of Alnus (Betulaceae) using nrDNA and cpDNA genetic markers. Molecular Ecology Resources 10: 594-605.
    • (2010) Molecular Ecology Resources , vol.10 , pp. 594-605
    • Ren, B.-Q.1    Xiang, X.-G.2    Chen, Z.-D.3
  • 37
    • 33745996423 scopus 로고    scopus 로고
    • The major evolutionary lineages of the coffee family (Rubiaceae, angiosperms). Combined analysis (nDNA and cpDNA) to infer the position of Coptosapelta and Luculia, and supertree construction based on rbcL, rps16, trnL-trnF and atpB-rbcL data. A new classification in two subfamilies, Cinchonoideae and Rubioideae
    • Robbrecht E, Manen JF. 2006. The major evolutionary lineages of the coffee family (Rubiaceae, angiosperms). Combined analysis (nrDNA and cpDNA) to infer the position of Coptosapelta and Luculia, and supertree construction based on rbcL, rps16, trnL-F and atpB-rbcL data. A new classification in two subfamilies, Cinchonoideae and Rubioideae. Systematics and Geography of Plants 76: 85-146. (Pubitemid 44065541)
    • (2006) Systematics and Geography of Plants , vol.76 , Issue.1 , pp. 85-146
    • Robbrecht, E.1    Manen, J.-F.2
  • 38
    • 0031406079 scopus 로고    scopus 로고
    • Chloroplast DNA phylogeny, reticulate evolution, and biogeography of Paeonia (Paeoniaceae)
    • Sang T, Crawford DJ, Stuessy TF. 1997. Chloroplast DNA phylogeny, reticulate evolution, and biogeography of Paeonia (Paeoniaceae). American Journal of Botany 84: 1120-1136. (Pubitemid 28106981)
    • (1997) American Journal of Botany , vol.84 , Issue.8 , pp. 1120-1136
    • Sang, T.1    Crawford, D.J.2    Stuessy, T.F.3
  • 39
    • 42649090839 scopus 로고    scopus 로고
    • DNA barcoding in the Cycadales: Testing the potential of proposed barcoding markers for species identification of Cycads
    • Sass C, Little DP, Stevenson DW, Specht CD. 2007. DNA barcoding in the Cycadales: testing the potential of proposed barcoding markers for species identification of Cycads. PLoS One 2: e1154.
    • (2007) PLoS One , vol.2
    • Sass, C.1    Little, D.P.2    Stevenson, D.W.3    Specht, C.D.4
  • 40
    • 2442507933 scopus 로고    scopus 로고
    • Independence of alignment and tree search
    • DOI 10.1016/j.ympev.2003.10.008
    • Simmons MP. 2004. Independence of alignment and tree search. Molecular Phylogenetics and Evolution 31: 874-879. (Pubitemid 38610960)
    • (2004) Molecular Phylogenetics and Evolution , vol.31 , Issue.3 , pp. 874-879
    • Simmons, M.P.1
  • 41
    • 0034350427 scopus 로고    scopus 로고
    • Gaps as characters in sequence-based phylogenetic analyses
    • Simmons MP, Ochoterena H. 2000. Gaps as characters in sequence-based phylogenetic analyses. Systematic Biology 49: 369-381.
    • (2000) Systematic Biology , vol.49 , pp. 369-381
    • Simmons, M.P.1    Ochoterena, H.2
  • 42
    • 33750573829 scopus 로고
    • Taxonomic and nomenclatural notes on the Hedyotis corymbosa-diffusa complex (Rubiaceae) in India
    • Sivarajan VV, Biju SD. 1990. Taxonomic and nomenclatural notes on the Hedyotis corymbosa-diffusa complex (Rubiaceae) in India. Taxon 39: 665-674.
    • (1990) Taxon , vol.39 , pp. 665-674
    • Sivarajan, V.V.1    Biju, S.D.2
  • 44
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • DOI 10.1093/molbev/msm092
    • Tamura K, Dudley J, Nei M, Kumar S. 2007. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4. 0. Molecular Biology and Evolution 24: 1596-1599. (Pubitemid 47236692)
    • (2007) Molecular Biology and Evolution , vol.24 , Issue.8 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 45
    • 0345393289 scopus 로고    scopus 로고
    • Paraphyly of Tarasa (Malvaceae) and Diverse Origins of the Polyploid Species
    • Tate JA, Simpson BB. 2003. Paraphyly of Tarasa (Malvaceae) and diverse origins of the polyploidy species. Systematic Botany 28: 723-737. (Pubitemid 37446934)
    • (2003) Systematic Botany , vol.28 , Issue.4 , pp. 723-737
    • Tate, J.A.1    Simpson, B.B.2
  • 46
    • 0000728801 scopus 로고
    • Relationships of Hedyotis fruticosa L. to Houstonia L. and Oldenlandia L
    • Terrell EE. 1975. Relationships of Hedyotis fruticosa L. to Houstonia L. and Oldenlandia L. Phytologia 31: 418-424.
    • (1975) Phytologia , vol.31 , pp. 418-424
    • Terrell, E.E.1
  • 47
    • 0001165544 scopus 로고
    • Overview and annotated list of North American species of Hedyotis, Houstonia, Oldenlandia (Rubiaceae), and related genera
    • Terrell EE. 1991. Overview and annotated list of North American species of Hedyotis, Houstonia, Oldenlandia (Rubiaceae), and related genera. Phytologia 71: 212-243.
    • (1991) Phytologia , vol.71 , pp. 212-243
    • Terrell, E.E.1
  • 48
    • 0035966282 scopus 로고    scopus 로고
    • Taxonomic review of Houstonia acerosa and H. palmeri, with notes on Hedyotis and Oldenlandia (Rubiaceae)
    • Terrell EE. 2001. Taxonomic review of Houstonia acerosa and H. palmeri, with notes on Hedyotis and Oldenlandia (Rubiaceae). Sida 19: 913-922. (Pubitemid 34082107)
    • (2001) SIDA, Contributions to Botany , vol.19 , Issue.4 , pp. 913-922
    • Terrell, E.E.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.