DNA-hosted copper nanoclusters for fluorescent identification of single nucleotide polymorphisms

ACS Nano

Volumn 6, Issue 4, 2012, Pages 3311-3317

  Jia, Xiaofang ^a,b   Li, Jing ^a,b   Han, Lei ^a,b   Ren, Jiangtao ^a,b   Yang, Xuan ^a,b   Wang, Erkang ^a,b  

^a CHANGCHUN INSTITUTE OF APPLIED CHEMISTRY   (China)

^b UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

Author keywords

Cu nanoclusters; DNA duplexes; DNA mismatches; DNA recognition; fluorescence

Indexed keywords

BIOLOGICAL PROBES; CONTROLLED TEMPERATURE; COPPER NANOCLUSTERS; DNA DESIGN; DNA DUPLEXES; DNA RECOGNITION; EARLY DIAGNOSIS; FLUORIMETRIC; HIGH SPECIFICITY; LUMINESCENT MECHANISM; METAL NANOCLUSTERS; POTENTIAL APPLICATIONS; RESEARCH RESULTS; SINGLE NUCLEOTIDE POLYMORPHISMS;

FLUORESCENCE; NANOCLUSTERS; PROBES;

DNA;

COPPER; DNA; METAL NANOPARTICLE;

ARTICLE; BASE MISPAIRING; CHEMICAL STRUCTURE; CHEMISTRY; CONFORMATION; GENETICS; NUCLEOTIDE SEQUENCE; SINGLE NUCLEOTIDE POLYMORPHISM; SPECTROFLUOROMETRY; TEMPERATURE;

BASE PAIR MISMATCH; BASE SEQUENCE; COPPER; DNA; METAL NANOPARTICLES; MODELS, MOLECULAR; NUCLEIC ACID CONFORMATION; POLYMORPHISM, SINGLE NUCLEOTIDE; SPECTROMETRY, FLUORESCENCE; TEMPERATURE;

EID: 84860385690     PISSN: 19360851     EISSN: 1936086X     Source Type: Journal    
DOI: 10.1021/nn3002455     Document Type: Article

References (41)

1. Jin, R.; Zhu, Y.; Qian, H. Quantum-Sized Gold Nanoclusters: Bridging the Gap between Organometallics and Nanocrystals Chem.-Eur. J. 2011, 17, 6584-6593
2. Xu, H. X.; Suslick, K. S. Water-Soluble Fluorescent Silver Nanoclusters Adv. Mater. 2010, 22, 1078-1082
3. Tanaka, S.-I.; Miyazaki, J.; Tiwari, D. K.; Jin, T.; Inouye, Y. Fluorescent Platinum Nanoclusters: Synthesis, Purification, Characterization, and Application to Bioimaging Angew. Chem., Int. Ed. 2011, 50, 431-435
4. Zhou, C.; Long, M.; Qin, Y.; Sun, X.; Zheng, J. Luminescent Gold Nanoparticles with Efficient Renal Clearance Angew. Chem., Int. Ed. 2011, 50, 3168-3172
5. Wu, Z. K.; Lanni, E.; Chen, W. Q.; Bier, M. E.; Ly, D.; Jin, R. C. High Yield, Large Scale Synthesis of Thiolate-Protected Ag-7 Clusters J. Am. Chem. Soc. 2009, 131, 16672-16674
6. Rao, T. U. B.; Pradeep, T. Luminescent Ag-7 and Ag-8 Clusters by Interfacial Synthesis Angew. Chem., Int. Ed. 2010, 49, 3925-3929
7. Yu, M.; Zhou, C.; Liu, J.; Hankins, J. D.; Zheng, J. Luminescent Gold Nanoparticles with pH-Dependent Membrane Adsorption J. Am. Chem. Soc. 2011, 133, 11014-11017
8. Richards, C. I.; Choi, S.; Hsiang, J.-C.; Antoku, Y.; Vosch, T.; Bongiorno, A.; Tzeng, Y.-L.; Dickson, R. M. Oligonucleotide-Stabilized Ag Nanocluster Fluorophores J. Am. Chem. Soc. 2008, 130, 5038-5039
9. Yeh, H. C.; Sharma, J.; Han, J. J.; Martinez, J. S.; Werner, J. H. A DNA-Silver Nanocluster Probe That Fluoresces upon Hybridization Nano Lett. 2010, 10, 3106-3110
10. Gwinn, E. G.; ONeill, P.; Guerrero, A. J.; Bouwmeester, D.; Fygenson, D. K. Sequence-Dependent Fluorescence of DNA-Hosted Silver Nanoclusters Adv. Mater. 2008, 20, 279-283
11. 2+ Ion Chem. Commun. 2009, 3395-3397
12. Chen, W.-Y.; Lan, G.-Y.; Chang, H.-T. Use of Fluorescent DNA-Templated Gold/Silver Nanoclusters for the Detection of Sulfide Ions Anal. Chem. 2011, 83, 9450-9455
13. Yang, S. W.; Vosch, T. Rapid Detection of MicroRNA by a Silver Nanocluster DNA Probe Anal. Chem. 2011, 83, 6935-6939
14. Sharma, J.; Yeh, H.-C.; Yoo, H.; Werner, J. H.; Martinez, J. S. Silver Nanocluster Aptamers: in Situ Generation of Intrinsically Fluorescent Recognition Ligands for Protein Detection Chem. Commun. 2011, 47, 2294-2296
15. Nakatani, K. Chemistry Challenges in SNP Typing ChemBioChem 2004, 5, 1623-1633
16. Lyamichev, V.; Mast, A. L.; Hall, J. G.; Prudent, J. R.; Kaiser, M. W.; Takova, T.; Kwiatkowski, R. W.; Sander, T. J.; de Arruda, M.; Arco, D. A. et al. Polymorphism Identification and Quantitative Detection of Genomic DNA by Invasive Cleavage of Oligonucleotide Probes Nat. Biotechnol. 1999, 17, 292-296
17. Wilhelmsson, L. M.; Norden, B.; Mukherjee, K.; Dulay, M. T.; Zare, R. N. Genetic Screening Using the Colour Change of a PNA-DNA Hybrid-Binding Cyanine Dye Nucleic Acids Res. 2002, 30, e3
18. Wang, D. G.; Fan, J. B.; Siao, C. J.; Berno, A.; Young, P.; Sapolsky, R.; Ghandour, G.; Perkins, N.; Winchester, E.; Spencer, J. et al. Large-Scale Identification, Mapping, and Genotyping of Single-Nucleotide Polymorphisms in the Human Genome Science 1998, 280, 1077-1082
19. Cosnier, S.; Mailley, P. Recent Advances in DNA Sensors Analyst 2008, 133, 984-991
20. Moran, N.; Bassani, D. M.; Desvergne, J. P.; Keiper, S.; Lowden, P. A. S.; Vyle, J. S.; Tucker, J. H. R. Detection of a Single DNA Base-Pair Mismatch Using an Anthracene-Tagged Fluorescent Probe Chem. Commun. 2006, 5003-5005
21. Yamana, K.; Fukunaga, Y.; Ohtani, Y.; Sato, S.; Nakamura, M.; Kim, W. J.; Akaike, T.; Maruyama, A. DNA Mismatch Detection Using a Pyrene-Excimer-Forming Probe Chem. Commun. 2005, 2509-2511
22. Duprey, J.-L. H. A.; Zhao, Z.-y.; Bassani, D. M.; Manchester, J.; Vyle, J. S.; Tucker, J. H. R. Detection of DNA Base Variation and Cytosine Methylation at a Single Nucleotide Site Using a Highly Sensitive Fluorescent Probe Chem. Commun. 2011, 47, 6629-6631
23. Zeglis, B. M.; Barton, J. K. a Mismatch-Selective Bifunctional Rhodium-Oregon Green Conjugate: a Fluorescent Probe for Mismatched DNA J. Am. Chem. Soc. 2006, 128, 5654-5655
24. Granzhan, A.; Teulade-Fichou, M. P. a Fluorescent Bisanthracene Macrocycle Discriminates between Matched and Mismatch-Containing DNA Chem.-Eur. J. 2009, 15, 1314-1318
25. Guo, W. W.; Yuan, J. P.; Dong, Q. Z.; Wang, E. K. Highly Sequence-Dependent Formation of Fluorescent Silver Nanoclusters in Hybridized DNA Duplexes for Single Nucleotide Mutation Identification J. Am. Chem. Soc. 2010, 132, 932-934
26. Rotaru, A.; Dutta, S.; Jentzsch, E.; Gothelf, K.; Mokhir, A. Selective dsDNA-Templated Formation of Copper Nanoparticles in Solution Angew. Chem., Int. Ed. 2010, 49, 5665-5667
27. Rucker, V. C.; Foister, S.; Melander, C.; Dervan, P. B. Sequence Specific Fluorescence Detection of Double Strand DNA J. Am. Chem. Soc. 2003, 125, 1195-1202
28. Kim, M.-J.; Kim, B.-R.; Kim, H.-T. Investigation of the Cu Binding Site at [dCdG] and [CG] Base Pairs in the Absence of a DNA Backbone Chem. Phys. Lett. 2011, 505, 57-64
29. 2+ Ions Biopolymers 2003, 72, 374-390
30. Vilar-Vidal, N.; Blanco, M. C.; Lopez-Quintela, M. A.; Rivas, J.; Serra, C. Electrochemical Synthesis of Very Stable Photoluminescent Copper Clusters J. Phys. Chem. C 2010, 114, 15924-15930
31. Lisiecki, I.; Billoudet, F.; Pileni, M. P. Control of the Shape and the Size of Copper Metallic Particles J. Phys. Chem. 1996, 100, 4160-4166
32. St-Louis, M.; Tanguay, R. M. Mutations in the Fumarylacetoacetate Hydrolase Gene Causing Hereditary Tyrosinemia Type I: Overview Hum. Mutat. 1997, 9, 291-299
33. Kypr, J.; Kejnovska, I.; Renciuk, D.; Vorlickova, M. Circular Dichroism and Conformational Polymorphism of DNA Nucleic Acids Res. 2009, 37, 1713-1725
34. Yam, V. W.-W.; Cheng, E. C.-C.; Zhou, Z.-Y. A Highly Soluble Luminescent Decanuclear Gold(I) Complex with a Propeller-Shaped Structure Angew. Chem., Int. Ed. 2000, 39, 1683-1685
35. Yam, V. W.-W.; Cheng, E. C.-C.; Cheung, K.-K. A Novel High-Nuclearity Luminescent Gold(I)-Sulfido Complex Angew. Chem., Int. Ed. 1999, 38, 197-199
36. Wu, Z.; Jin, R. On the Ligands Role in the Fluorescence of Gold Nanoclusters Nano Lett. 2010, 10, 2568-2573
37. Seidel, C. A. M.; Schulz, A.; Sauer, M. H. M. Nucleobase-Specific Quenching of Fluorescent Dyes. 1. Nucleobase One-Electron Redox Potentials and Their Correlation with Static and Dynamic Quenching Efficiencies J. Phys. Chem. 1996, 100, 5541-5553
38. Bahr, M.; Gabelica, V.; Granzhan, A.; Teulade-Fichou, M. P.; Weinhold, E. Selective Recognition of Pyrimidine-Pyrimidine DNA Mismatches by Distance-Constrained Macrocyclic Bis-Intercalators Nucleic Acids Res. 2008, 36, 5000-5012
39. Qin, W. J.; Yung, L. Y. L. Nanoparticle-Based Detection and Quantification of DNA with Single Nucleotide Polymorphism (SNP) Discrimination Selectivity Nucleic Acids Res. 2007, 35, e111
40. Kanjanawarut, R.; Su, X. D. Colorimetric Detection of DNA Using Unmodified Metallic Nanoparticles and Peptide Nucleic Acid Probes Anal. Chem. 2009, 81, 6122-6129
41. Farjami, E.; Clima, L.; Gothelf, K.; Ferapontova, E. E. "Off-On" Electrochemical Hairpin-DNA-Based Genosensor for Cancer Diagnostics Anal. Chem. 2011, 83, 1594-1602