메뉴 건너뛰기




Volumn 35, Issue 1, 2007, Pages

Switching base preferences of mismatch cleavage in endonuclease V: An improved method for scanning point mutations

Author keywords

[No Author keywords available]

Indexed keywords

ENDONUCLEASE; ENDONUCLEASE V; MUTANT PROTEIN; POLYDEOXYRIBONUCLEOTIDE SYNTHASE; PROTEIN Y80; UNCLASSIFIED DRUG; DEOXYRIBONUCLEASE (PYRIMIDINE DIMER);

EID: 33846682789     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkl916     Document Type: Article
Times cited : (12)

References (26)
  • 2
    • 0345279870 scopus 로고    scopus 로고
    • Use of DNA toolbox for the characterization of mutation scanning methods. II: Evaluation of single-strand conformation polymorphism analysis
    • Highsmith,W.E.,Jr, Nataraj,A.J., Jin,Q., O'Connor,J.M., El-Nabi,S.H., Kusukawa,N. and Garner,M.M. (1999) Use of DNA toolbox for the characterization of mutation scanning methods. II: Evaluation of single-strand conformation polymorphism analysis. Electrophoresis, 20, 1195-1203.
    • (1999) Electrophoresis , vol.20 , pp. 1195-1203
    • Highsmith Jr., W.E.1    Nataraj, A.J.2    Jin, Q.3    O'Connor, J.M.4    El-Nabi, S.H.5    Kusukawa, N.6    Garner, M.M.7
  • 3
    • 0033180405 scopus 로고    scopus 로고
    • Mutation detection by denaturing DNA chromatography using fluorescently labeled polymerase chain reaction products
    • Hecker,K.H., Taylor,P.D. and Gjerde,D.T. (1999) Mutation detection by denaturing DNA chromatography using fluorescently labeled polymerase chain reaction products. Anal. Biochem., 272, 156-164.
    • (1999) Anal. Biochem. , vol.272 , pp. 156-164
    • Hecker, K.H.1    Taylor, P.D.2    Gjerde, D.T.3
  • 4
    • 2942650745 scopus 로고    scopus 로고
    • Chemical cleavage reactions of DNA on solid support: Application in mutation detection
    • Bui,C.T., Lambrinakos,A., Babon,J.J. and Cotton,R.G. (2003) Chemical cleavage reactions of DNA on solid support: Application in mutation detection. BMC Chem. Biol., 3, 1.
    • (2003) BMC Chem. Biol. , vol.3 , pp. 1
    • Bui, C.T.1    Lambrinakos, A.2    Babon, J.J.3    Cotton, R.G.4
  • 5
    • 0037244523 scopus 로고    scopus 로고
    • The use of resolvases T4 endonuclease VII and T7 endonuclease I in mutation detection
    • Babon,J.J., McKenzie,M. and Cotton,R.G. (2003) The use of resolvases T4 endonuclease VII and T7 endonuclease I in mutation detection. Mol. Biotechnol., 23, 73-81.
    • (2003) Mol. Biotechnol. , vol.23 , pp. 73-81
    • Babon, J.J.1    McKenzie, M.2    Cotton, R.G.3
  • 6
    • 12244274382 scopus 로고    scopus 로고
    • Plastic contaminant masquerades as DNA in mutation detection by denaturing HPLC
    • Glare,E.M., Jenkins,A.J. and Cotton,R.G. (2003) Plastic contaminant masquerades as DNA in mutation detection by denaturing HPLC. Biotechniques, 34, 59-60.
    • (2003) Biotechniques , vol.34 , pp. 59-60
    • Glare, E.M.1    Jenkins, A.J.2    Cotton, R.G.3
  • 8
    • 85047698770 scopus 로고    scopus 로고
    • An endonuclease/ligase based mutation scanning method especially suited for analysis of neoplastic tissue
    • Huang,J., Kirk,B., Favis,R., Soussi,T., Paty,P., Cao,W. and Barany,F. (2002) An endonuclease/ligase based mutation scanning method especially suited for analysis of neoplastic tissue. Oncogene, 21, 1909-1921.
    • (2002) Oncogene , vol.21 , pp. 1909-1921
    • Huang, J.1    Kirk, B.2    Favis, R.3    Soussi, T.4    Paty, P.5    Cao, W.6    Barany, F.7
  • 9
    • 0028876575 scopus 로고
    • Detection of mutations by cleavage of DNA heteroduplexes with bacteriophage resolvases
    • Mashal,R.D., Koontz,J. and Sklar,J. (1995) Detection of mutations by cleavage of DNA heteroduplexes with bacteriophage resolvases. Nature Genet., 9, 177-183.
    • (1995) Nature Genet. , vol.9 , pp. 177-183
    • Mashal, R.D.1    Koontz, J.2    Sklar, J.3
  • 10
    • 0036321562 scopus 로고    scopus 로고
    • An amplification and ligation-based method to scan for unknown mutations in DNA
    • Zhang,Y., Kaur,M., Price,B.D., Tetradis,S. and Makrigiorgos,G.M. (2002) An amplification and ligation-based method to scan for unknown mutations in DNA. Hum. Mutat., 20, 139-147.
    • (2002) Hum. Mutat. , vol.20 , pp. 139-147
    • Zhang, Y.1    Kaur, M.2    Price, B.D.3    Tetradis, S.4    Makrigiorgos, G.M.5
  • 11
    • 0028032935 scopus 로고
    • Strand-specific cleavage of mismatch-containing DNA by deoxyinosine 3′-endonuclease from Escherichia coli
    • Yao,M. and Kow,Y.W. (1994) Strand-specific cleavage of mismatch-containing DNA by deoxyinosine 3′-endonuclease from Escherichia coli. J. Biol. Chem., 269, 31390-31396.
    • (1994) J. Biol. Chem. , vol.269 , pp. 31390-31396
    • Yao, M.1    Kow, Y.W.2
  • 12
    • 12144256802 scopus 로고    scopus 로고
    • Active site plasticity of endonuclease V from Salmonella typhimurium
    • Feng,H., Klutz,A.M. and Cao,W. (2005) Active site plasticity of endonuclease V from Salmonella typhimurium. Biochemistry, 44, 675-683.
    • (2005) Biochemistry , vol.44 , pp. 675-683
    • Feng, H.1    Klutz, A.M.2    Cao, W.3
  • 13
    • 0035979334 scopus 로고    scopus 로고
    • Multiple cleavage activities of endonuclease V from Thermotoga maritima: Recognition and strand nicking mechanism
    • Huang,J., Lu,J., Barany,F. and Cao,W. (2001) Multiple cleavage activities of endonuclease V from Thermotoga maritima: Recognition and strand nicking mechanism. Biochemistry, 40, 8738-8748.
    • (2001) Biochemistry , vol.40 , pp. 8738-8748
    • Huang, J.1    Lu, J.2    Barany, F.3    Cao, W.4
  • 16
    • 0033080784 scopus 로고    scopus 로고
    • Biochemical properties of a high fidelity DNA ligase from Thermus species AK16D
    • Tong,J., Cao,W. and Barany,F. (1999) Biochemical properties of a high fidelity DNA ligase from Thermus species AK16D. Nucleic Acids Res., 27, 788-794.
    • (1999) Nucleic Acids Res. , vol.27 , pp. 788-794
    • Tong, J.1    Cao, W.2    Barany, F.3
  • 17
    • 23944524787 scopus 로고    scopus 로고
    • Defining amino acid residues involved in DNA-protein interactions and revelation of 3′-exonuclease activity in endonuclease V
    • Feng,H., Dong,L., Klutz,A.M., Aghaebrahim,N. and Cao,W. (2005) Defining amino acid residues involved in DNA-protein interactions and revelation of 3′-exonuclease activity in endonuclease V. Biochemistry, 44, 11486-11495.
    • (2005) Biochemistry , vol.44 , pp. 11486-11495
    • Feng, H.1    Dong, L.2    Klutz, A.M.3    Aghaebrahim, N.4    Cao, W.5
  • 18
    • 0037008086 scopus 로고    scopus 로고
    • Mutational analysis of endonuclease V from Thermotoga maritima
    • Huang,J., Lu,J., Barany,F. and Cao,W. (2002) Mutational analysis of endonuclease V from Thermotoga maritima. Biochemistry, 41, 8342-8350.
    • (2002) Biochemistry , vol.41 , pp. 8342-8350
    • Huang, J.1    Lu, J.2    Barany, F.3    Cao, W.4
  • 19
    • 0033531235 scopus 로고    scopus 로고
    • Multiplex PCR/LDR for detection of K-ras mutations in primary colon tumors
    • Khanna,M., Park,P., Zirvi,M., Cao,W., Picon,A., Day,J., Paty,P. and Barany,F. (1999) Multiplex PCR/LDR for detection of K-ras mutations in primary colon tumors. Oncogene, 18, 27-38.
    • (1999) Oncogene , vol.18 , pp. 27-38
    • Khanna, M.1    Park, P.2    Zirvi, M.3    Cao, W.4    Picon, A.5    Day, J.6    Paty, P.7    Barany, F.8
  • 20
    • 5144225452 scopus 로고    scopus 로고
    • Biochemical identification of Argonaute 2 as the sole protein required for RNA-induced silencing complex activity
    • Rand,T.A., Ginalski,K., Grishin,N.V. and Wang,X. (2004) Biochemical identification of Argonaute 2 as the sole protein required for RNA-induced silencing complex activity. Proc. Natl Acad. Sci. USA, 101, 14385-14389.
    • (2004) Proc. Natl Acad. Sci. USA , vol.101 , pp. 14385-14389
    • Rand, T.A.1    Ginalski, K.2    Grishin, N.V.3    Wang, X.4
  • 21
    • 0028934537 scopus 로고
    • Crystal structure and mutational analysis of human uracil-DNA glycosylase: Structural basis for specificity and catalysis
    • Mol,C.D., Arvai,A.S., Slupphaug,G., Kavli,B., Alseth,I., Krokan,H.E. and Tainer,J.A. (1995) Crystal structure and mutational analysis of human uracil-DNA glycosylase: Structural basis for specificity and catalysis. Cell, 80, 869-878.
    • (1995) Cell , vol.80 , pp. 869-878
    • Mol, C.D.1    Arvai, A.S.2    Slupphaug, G.3    Kavli, B.4    Alseth, I.5    Krokan, H.E.6    Tainer, J.A.7
  • 23
    • 0037100702 scopus 로고    scopus 로고
    • Effects of mutations at tyrosine 66 and asparagine 123 in the active site pocket of Escherichia coli uracil DNA glycosylase on uracil excision from synthetic DNA oligomers: Evidence for the occurrence of long-range interactions between the enzyme and substrate
    • Handa,P., Acharya,N. and Varshney,U. (2002) Effects of mutations at tyrosine 66 and asparagine 123 in the active site pocket of Escherichia coli uracil DNA glycosylase on uracil excision from synthetic DNA oligomers: Evidence for the occurrence of long-range interactions between the enzyme and substrate. Nucleic Acids Res., 30, 3086-3095.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 3086-3095
    • Handa, P.1    Acharya, N.2    Varshney, U.3
  • 24
    • 0028959237 scopus 로고
    • The structural basis of specific base-excision repair by uracil-DNA glycosylase
    • Savva,R., McAuley-Hecht,K., Brown,T. and Pearl,L. (1995) The structural basis of specific base-excision repair by uracil-DNA glycosylase. Nature, 373, 487-493.
    • (1995) Nature , vol.373 , pp. 487-493
    • Savva, R.1    McAuley-Hecht, K.2    Brown, T.3    Pearl, L.4
  • 25
    • 0037399148 scopus 로고    scopus 로고
    • Rational engineering of a DNA glycosylase specific for an unnatural cytosine:Pyrene base pair
    • Kwon,K., Jiang,Y.L. and Stivers,J.T. (2003) Rational engineering of a DNA glycosylase specific for an unnatural cytosine:pYrene base pair. Chem. Biol., 10, 351-359.
    • (2003) Chem. Biol. , vol.10 , pp. 351-359
    • Kwon, K.1    Jiang, Y.L.2    Stivers, J.T.3
  • 26
    • 3242875178 scopus 로고    scopus 로고
    • Cleavage of deoxyoxanosine-containing oligodeoxyribonucleotides by bacterial endonuclease V
    • Hitchcock,T.M., Gao,H. and Cao,W. (2004) Cleavage of deoxyoxanosine-containing oligodeoxyribonucleotides by bacterial endonuclease V. Nucleic Acids Res., 32, 4071-4080.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 4071-4080
    • Hitchcock, T.M.1    Gao, H.2    Cao, W.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.