Principles and methods for nanomechatronics: Signaling, structure, and functions toward nanorobots

IEEE Transactions on Systems, Man and Cybernetics Part C: Applications and Reviews

Volumn 42, Issue 3, 2012, Pages 357-366

  Liu, Jian Qin ^a   Nakano, Tadashi ^b  

^a NATIONAL INSTITUTE OF INFORMATION AND COMMUNICATIONS TECHNOLOGY   (Japan)

^b OSAKA UNIVERSITY   (Japan)

Author keywords

Biomedical engineering; mechatronics; nanobio technology; nanomachines; systems engineering

Indexed keywords

BIOLOGICAL STUDIES; CONTROL METHODS; CONTROL TECHNIQUES; CONTROLLER STRUCTURES; INFORMATICS; LIVING CELL; MOLECULAR MOTORS; NANOBIOSYSTEMS; NANOMACHINES; NANOMECHATRONICS; NANOROBOTS; SIGNALING PATHWAYS;

BIOMEDICAL ENGINEERING; LINEAR MOTORS; MECHATRONICS; ROBOTS; SYSTEMS ENGINEERING;

NANOROBOTICS;

EID: 84860216064     PISSN: 10946977     EISSN: None     Source Type: Journal    
DOI: 10.1109/TSMCC.2011.2119481     Document Type: Article

References (53)

1. K. Bhattacharya and R. D. James, "The material is the machine", Science, vol. 307, no. 5706, pp. 53-54, Jan. 2005. (Pubitemid 40093469)
2. S. A. Burgess, M. L. Walker, H. Sakakibara, P. J. Knight, and K. Oiwa, "Dynein structure and power stroke", Nature, vol. 421, pp. 715-718, Feb. 2003. (Pubitemid 36227616)
3. R. B. Vallee and P. Höök, "A magnificent machine", Nature, vol. 421, pp. 701-702, Feb. 2003. (Pubitemid 36227606)
4. C. M. Niemeyer, "Living machinery", Nature, vol. 429, p. 20, Jul. 2004.
5. D. S. Goodsell, Bionanotechnology: Lessons from Nature. Hoboken, NJ: Wiley-Liss, 2004.
6. S. K. Vashist, R. Tewari, I. Kaur, R. P. Bajpai, and L. M. Bharadwaj, "Smart-drug delivery system employing molecular motors", in Proc. ICISIP, 2005, pp. 441-446. (Pubitemid 44596042)
7. S. Sengupta and R. Sasisekharan, "Exploiting nanotechnology to target cancer", Brit. J. Cancer, vol. 96, pp. 1315-1319, Apr. 2007. (Pubitemid 46685778)
8. A. Cavalcanti, W. W. Wood, L. C. Kretly, and B. Shirnzadeh, "Computational nanomechatronics: A pathway for control and manufacturing nanorobots", in Proc. CIMCA-IAWTIC, 2006.
9. J. Reif. (Sep. 27, 1999). Moleware and the molecular computer [Online]. Available: http://www.cs.duke.edu/~reif/paper/Reif.Molectronics/Sept99update/ MOLESOFTreport.9.99.rtf
10. D. M. Auslander, "What is mechatronics?", IEEE/ASME Trans. Mechatronics, vol. 1, no. 1, pp. 5-9, Mar. 1996. (Pubitemid 126780841)
11. G. M. Whitesides, "The once and future nanomachine", Sci. Amer., vol. 285, no. 3, pp. 78-83, Sep. 16, 2001.
12. P. Satir, "The cilium as a biological nanomachine", FASEB J., vol. 13, S235-S237, Dec. 1999. (Pubitemid 30009997)
13. K. Oiwa, "Protein motors: Their mechanical properties and application to nanometer-scale devices", Mater. Sci. Forum, vol. 426-432, pp. 2339-2344, 2003.
14. M. J. A. Tyreman and J. E. Molloy, "Molecular motors: Nature's nanomachines", Proc. Inst. Elect. Eng., Nanobiotechnol., vol. 150, no. 3, pp. 95-102, Dec. 2003.
15. K. J. Verhey and T. A. Rapoport, "Kinesin carries the signal", Trends Biochem. Sci., vol. 26, no. 9, pp. 545-550, Sep. 2001. (Pubitemid 32823439)
16. H. R. Bourne and O. Weiner, "A chemical compass", Nature, vol. 419, p. 21, Sep. 2002. (Pubitemid 34987854)
17. A. Yamada, M. Yoshio, H. Kojima, and K. Oiwa, "An in intro assay reveals essential protein components for the 'catch' state of invertebrate smooth muscle", Proc. Nat. Acad. Sci. USA, vol. 98, no. 12, pp. 6635-6640, Jun. 2001. (Pubitemid 32538268)
18. M. Beaudry, M. Holzer, G. Niemann, and F. Otto, "McNaughton families of languages", Theor. Comput. Sci., vol. 290, no. 3, pp. 1581-1628, Jan. 2003.
19. A. Mogilner, T. C. Elston, H. Wang, and G. Oster, "Molecular Motors: Theory", in Computational Cell Biology, C. P. Fall, E. S. Marland, J. M. Wagner, and J. J. Tyson, Eds. New York: Springer, 2002, Ch. 12, pp. 320-353.
20. H. Matsuura and M. Nakano, "Stochastic dynamics of molecular machine: It's nanomachine which is based on Nyquist theory", in Proc. Int. Symp. Micromechatron. Human Sci., Nov. 23-26, 1999, pp. 51-58. (Pubitemid 30585409)
21. M. A. Lyshevski, "Brownian dynamics: Molecular systems modeling and control", in Proc. IEEE Conf. Nanotechnol., 2004, pp. 225-227. (Pubitemid 40789479)
22. N. N. Sharma, M. Ganesh, and R. K. Mittal, "Non-Brownian motion of nanoparticles: An impact process model", IEEE Trans. Nanotechnol., vol. 3, no. 1, pp. 180-186, Mar. 2004.
23. R. K. Doot, H. Hess, and V. Vogel, "Engineered networks of oriented microtubule filaments for directed cargo transport", Soft Matter, no. 3, pp. 349-356, 2007.
24. A. Månsson, M. Sundberg, R. Bunk, M. Balaz, I. A. Nicholls, P. Omling, J. O. Tegenfeldt, S. Tagerud, and L. Montelius, "Actin-based molecular motors for cargo transportation in nanotechnology - potentials and challenges", IEEE Trans. Adv. Packag., vol. 28, no. 4, pp. 547-555, Nov. 2005. (Pubitemid 41723914)
25. J. Stelling, U. Sauer, Z. Szallasi, F. J. Doyle, III, and J. Doyle, "Robustness of cellular functions", Cell, vol. 118, no. 6, pp. 675-685, Sep. 2004. (Pubitemid 39221728)
26. A.-L. Barabási and Z. N. Oltvai, "Network biology: Understanding the cell's functional organization", Nat. Rev. Genet., vol. 5, pp. 101-113, Feb. 2004. (Pubitemid 38160277)
27. E. A. Elion, M. Qi, and W. Chen, "Signaling specificity in yeast", Science, vol. 307, no. 5710, pp. 687-688, Feb. 2005. (Pubitemid 40194630)
28. H. Kitano and T. Azuma, "Systems biology and control", Syst., Control Inform., vol. 48, no. 3, pp. 104-111, 2004 (in Japanese). (Pubitemid 38530966)
29. T.-M. Yi, Y. Huang, M. I. Simon, and J. Doyle, "Robust perfect adaptation in bacterial chemotaxis through integral feedback control", Proc. Nat. Acad. Sci. USA, vol. 97, no. 9, pp. 4649-4653, Apr. 2000. (Pubitemid 30238612)
30. H. Kurata, H. El-Samad, R. Iwasaki, H. Ohtake, J. C. Doyle, I. Grigorova, C. A. Gross, and M. Khammash, "Module-based analysis of robustness tradeoffs in the heat shock response system", PLoS Comput. Biol., vol. 2, no. 7, p. e59, 2006.
31. J. E. Ferrell Jr. and E. M. Machleder, "The biochemical basis of an all-ornone cell fate switch in Xenopus oocytes", Science, vol. 280, no. 5365, pp. 895-898, May 1998. (Pubitemid 28215598)
32. K. C. Chen, A. Csikasz-Nagy, B. Gyorffy, J. Val, B. Novak, and J. J. Tyson, "Kinetic analysis of a molecular model of the budding yeast cell cycle", Mol. Biol. Cell, vol. 11, no. 1, pp. 369-391, Jan. 2000. (Pubitemid 30075529)
33. H. El-Samad, H. Kurata, J. Doyle, C. A. Gross, and M. Khammash, "Surviving heat shock: Control strategies for robustness and performance", Proc. Nat. Acad. Sci. USA, vol. 102, no. 8, pp. 2736-2741, Feb. 2005. (Pubitemid 40299862)
34. B.-S. Chen, W.-S. Wu, Y.-C. Wang, and W.-H. Li, "On the robust circuit design schemes of biochemical networks: steady-state approach", IEEE Trans. Biomed. Circuits Syst., vol. 1, no. 2, pp. 91-104, Jun. 2007. (Pubitemid 350141710)
35. B.-S. Chen and P.-W. Chen, "Robust engineered circuit design principles for stochastic biochemical networks with parameter uncertainties and disturbances", IEEE Trans. Biomed. Circuits Syst., vol. 2, no. 2, pp. 114-132, Jun. 2008.
36. A. Breitkreutz, H. Choi, J. R. Sharom, L. Boucher, V. Neduva, B. Larsen, Z.-Y. Lin, B.-J. Breitkreutz, C. Stark, G. Liu, J. Ahn, D. Dewar-Darch, T. Reguly, X. Tang, R. Almeida, Z. S. Qin, T. Pawson, A.-C. Gingras, A. I. Nesvizhskii, and M. Tyers, "A global protein kinase and phosphatase interaction network in yeast", Science, vol. 328, no. 5981, pp. 1043-1046, May 2010.
37. E. D. Levy, C. R. Landry, and S. W. Michnick, "Signaling through cooperation", Science, vol. 328, no. 5981, pp. 983-984, May 2010.
38. E. C. Martins and F. G. Jota, "Design of networked control systems with explicit compensation for time-delay variations", IEEE Trans. Syst., Man, Cybern. C, Appl. Rev., vol. 40, no. 3, pp. 308-318, May 2010.
39. Z. Wang, J. G. Edwards, N. Riley, D. W. Provance, R. Karcher, X.-d. Li, I. G. Davison, M. Ikebe, J. A. Mercer, J. A. Kauer, and M. D. Ehlers, "Myosin Vb mobilizes recycling endosomes and AMPA receptors for postsynaptic plasticity", Cell, vol. 135, no. 3, pp. 535-548, Oct. 2008.
40. Y. Goda, "Along memory lane", Nature, vol. 456, pp. 590-591, Dec. 2008.
41. J.-Q. Liu and T. Nakano, "Quantitative analysis of the feedback of the robust signaling pathway network of myosin V molecular motors on GluR1 of AMPA in neurons: A networking approach for controlling nanobiomachines", in Proc. 4th Int. ICST Conf. Nano.-Net., Lucerne, Switzerland, Oct. 18-20, 2009, pp. 34-38.
42. R. Weiss and T. F. Knight, Jr., "Engineered communications for microbial robotics", in Proc. 6th Int. Workshop DNA-Based Comput., Leiden, The Netherlands, Jun. 13-17, 2000, pp. 1-16. (Pubitemid 33275853)
43. D. G. Gibson, J. I. Glass, C. Lartigue, V. N. Noskov, R.-Y. Chuang, M. A. Algire, G. A. Benders, M. G. Montague, L. Ma, M. M. Moodie, C. Merryman, S. Vashee, R. Krishnakumar, N. Assad-Garcia, C. Andrews-Pfannkoch, E. A. Denisova, L. Young, Z.-Q. Qi, T. H. Segall-Shapiro, C. H. Calvey, Prashanth P. Parmar, C. A. Hutchison, III, H. O. Smith, and J. C. Venter, "Creation of a bacterial cell controlled by a chemically synthesized genome", Science, vol. 329, no. 5987, pp. 52-56, Jul. 2010.
44. E. Pennisi, "Synthetic genome brings new life to bacterium", Science, vol. 328, no. 5981, pp. 958-959, May 2010.
45. A. Ferreira and S. S. Aphale, "A survey of modeling and control techniques for micro-and nanoelectromechanical systems", IEEE Trans. Syst., Man, Cybern. C, Appl. Rev., to be published.
46. A. A. G. Requicha, "Nanorobots, NEMS, and nanoassembly", Proc. IEEE, vol. 91, no. 11, pp. 1922-1933, Nov. 2003. (Pubitemid 40890795)
47. A. Cavalcanti, T. Hogg, B. Shirinzadeh, and H. C. Liaw, "Nanorobot communication techniques: A comprehensive tutorial" in Proc. ICARCV, 2006, pp. 1-6.
48. A. Cavalcanti, "Assembly automation with evolutionary nanorobots and sensor-based control applied to nanomedicine", IEEE Trans. Nanotechnol., vol. 2, no. 2, pp. 82-87, Jun. 2003.
49. A. Cavalcanti, Jr. and R. A. Freitas, "Nanorobotics control design: A collective behavior approach for medicine", IEEE Trans. Nanobiosci., vol. 4, no. 2, pp. 133-140, Jun. 2005.
50. (2004). [Online]. Available: http://nobelprize.org/nobel-prizes/medicine/ laureates/2004/press.html
51. A. Cavalcanti, B. Shirinzadeh, R. A. Freitas Jr, and T. Hogg, "Nanorobot architecture formedical target identification", Nanotechnol., vol. 19, no. 1, p. 015103, Jan. 2008.
52. A. Cavalcanti, B. Shirinzadeh, D. Murphy, and J. A. Smith, "Nanorobots for laparoscopic cancer surgery", in Proc. 6th IEEE/ACIS Int. Conf. Comput. Inform. Sci., Jul. 11-13, 2007, pp. 738-743.
53. H. Jiang, S. Wang, W. Xu, Z. Zhang, and L. He, "Construction of medical nanorobot", in Proc. IEEE Int. Conf. Robot. Biomimetics, 2005, pp. 151-154. (Pubitemid 46499571)