Surviving heat shock: Control strategies for robustness and performance

Proceedings of the National Academy of Sciences of the United States of America

Volumn 102, Issue 8, 2005, Pages 2736-2741

  El Samad, H ^a   Kurata, H ^a,b   Doyle, J C ^c   Gross, C A ^d   Khammash, M ^a  

^a University of California   (United States)

^b KYUSHU INSTITUTE OF TECHNOLOGY   (Japan)

^c CALIFORNIA INSTITUTE OF TECHNOLOGY   (United States)

^d UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Control theory; Heat shock stress response; Mathematical modeling

Indexed keywords

PROTEIN;

ALGORITHM; ARTICLE; BIOLOGICAL MODEL; CONTROL STRATEGY; HEAT SHOCK; MATHEMATICAL MODEL; MOLECULAR BIOLOGY; PHENOTYPE; PRIORITY JOURNAL;

ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; FEEDBACK; HEAT-SHOCK PROTEINS; HEAT-SHOCK RESPONSE; HSP70 HEAT-SHOCK PROTEINS; MATHEMATICS; MODELS, BIOLOGICAL; SIGMA FACTOR;

EID: 14544280668     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0403510102     Document Type: Article

References (27)

1. Hartwell, L. H., Hopfield, J., Leibler, S. & Murray, A. W. (1999) Nature 81, C47-C52.
2. Csete, M. & Doyle, J. C. (2002) Science 295, 1664-1669.
3. Craig, E. A. (1985) Crit. Rev. Biochem. 18, 239-280.
4. Gross, C. A. (1996) in Escherichia coli and Salmonella: Cellular and Molecular Biology, eds. Neidhart, F. C., Curtis, R. I., Ingraham, J. L., Lin, C. C. Low, K. B., Magasnik, B., Reznikoff, W. S., Riley, M., Schaechter, M. & Umbarger, H. E. (Am. Soc. Microbiol., Washington, DC), pp. 1384-1394.
5. Straus, D. B., Waiter, W. A. & Gross, C. A. (1990) Genes Dev. 4, 2202-2209.
6. Morita, M., Kanemori, M., Yanagi, H. & Yura, T. (1999) J. Bacteriol. 181, 401-410.
7. Herman, C., Prakash, S., Lu, C. Z., Matouschek, A. & Gross, C. A. (2003) Mol. Cell 11, 659-669.
8. Morita, M., Kanemori, M., Yanaei, H. & Yura, T. (2000) Proc. Natl. Acad. Sci. USA 97, 5860-5865.
9. Tatsuta, T., Joo, D., Calender, R., Akiyama, Y. & Ogura, T. (2000) FEBS Lett. 478, 271-275.
10. Khammash, M. & El-Samad, H. (2004) IEEE Control Syst. Mag. 24, 62-76.
11. Kanemori, M., Nishihara, K., Yanagi, H. & Takashi, Y. (1997) J. Bacteriol. 179, 7219-7225.
12. Petzold, L. R. (1983) in Scientific Computing, ed. Stepleman, R. S. (North-Holland, Amsterdam), pp. 65-68.
13. Li, S. & Petzold, L. R. (2000) J. Comput. Appl. Math. 125, 131-146.
14. Gillespie, D. T. (1976) J. Comput. Phys. 22, 403-434.
15. Alves, R. & Savageau, M. A. (2000) Bioinformatics 16, 786-798.
16. Thattai, M. & Van Oudenaarden, A. (2001) Proc. Natl. Acad. Sci. USA 98, 8614-8619.
17. Elf, J. & Ehrenberg, M. (2003) Genes Res. 13, 2475-2484.
18. Shen-Orr, S., Milo, R., Mangan, S. & Alon, U. (2002) Nat. Genet. 31, 64-68.
19. Savageau, M. A. (1974) Nature 252, 546-549.
20. Rosenfdd, N., Elowitz, M. B. & Alon, U. (2002) J. Mol. Biol. 323, 785-793.
21. Schimke, R. T. (1969) Curr. Top. Cell. Regul. 1, 77-124.
22. Covert, M. W., Schilling, C. H. & Palsson, B. (2001) J. Theor. Biol. 213, 73-88.
23. Becskei, A. & Serrano, L. (2000) Nature 405, 590-593.
24. Hilt, W. & Wolf, D. H. (1996) Trends Biochem. Sci. 21, 96-102.
25. Spirin, V. & Mirny, L. A. (2003) Proc. Natl. Acad. Sci. USA 100, 12123-12128.
26. El-Samad, H., Goff, J. P. & Khammash, M. (2002) J. Theor. Biol. 214, 17-29.
27. Yi, T. M., Huang, Y., Simon, M. I. & Doyle, J. (2000) Proc. Natl. Acad. Sci. USA 97, 4649-4653.