메뉴 건너뛰기




Volumn 40, Issue 7, 2012, Pages 3056-3065

A central fragment of ribosomal protein S26 containing the eukaryote-specific motif YxxPKxYxK is a key component of the ribosomal binding site of mRNA region 5′ of the e site codon

Author keywords

[No Author keywords available]

Indexed keywords

INITIATION FACTOR 3; MESSENGER RNA; NUCLEOTIDE; PROTEIN S 26; RIBOSOME PROTEIN; TRANSFER RNA; UNCLASSIFIED DRUG;

EID: 84860151944     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkr1212     Document Type: Article
Times cited : (21)

References (40)
  • 2
    • 0037154986 scopus 로고    scopus 로고
    • Ribosome structure and the mechanism of translation
    • DOI 10.1016/S0092-8674(02)00619-0
    • Ramakrishnan, V. (2002) Ribosome structure and the mechanism of translation. Cell, 108, 557-572. (Pubitemid 34260880)
    • (2002) Cell , vol.108 , Issue.4 , pp. 557-572
    • Ramakrishnan, V.1
  • 3
    • 39749138785 scopus 로고    scopus 로고
    • A structural understanding of the dynamic ribosome machine
    • DOI 10.1038/nrm2352, PII NRM2352
    • Steitz, T.A. (2008) A structural understanding of the dynamic ribosome machine. Nat. Rev. Mol. Cell Biol., 9, 242-253. (Pubitemid 351301830)
    • (2008) Nature Reviews Molecular Cell Biology , vol.9 , Issue.3 , pp. 242-253
    • Steitz, T.A.1
  • 4
    • 78649426085 scopus 로고    scopus 로고
    • Crystal structure of the eukaryotic ribosome
    • Ben-Shem, A., Jenner, L., Yusupova, G. and Yusupov, M. (2010) Crystal structure of the eukaryotic ribosome. Science, 330, 1203-1209.
    • (2010) Science , vol.330 , pp. 1203-1209
    • Ben-Shem, A.1    Jenner, L.2    Yusupova, G.3    Yusupov, M.4
  • 5
    • 79951510534 scopus 로고    scopus 로고
    • Crystal structure of the eukaryotic 40S ribosomal subunit in complex with initiation factor 1
    • Rabl, J., Leibundgut, M., Ataide, S.F., Haag, A. and Ban, N. (2011) Crystal structure of the eukaryotic 40S ribosomal subunit in complex with initiation factor 1. Science, 331, 730-736.
    • (2011) Science , vol.331 , pp. 730-736
    • Rabl, J.1    Leibundgut, M.2    Ataide, S.F.3    Haag, A.4    Ban, N.5
  • 7
    • 33644818227 scopus 로고    scopus 로고
    • Interactions of the release factor RF1 with the ribosome as revealed by Cryo-EM
    • DOI 10.1016/j.jmb.2006.01.038, PII S0022283606000660
    • Rawat, U., Gao, H., Zavialov, A., Gursky, R., Ehrenberg, M. and Frank, J. (2006) Interactions of the release factor RF1 with the ribosome as revealed by cryo-EM. J. Mol. Biol., 357, 1144-1153. (Pubitemid 43357978)
    • (2006) Journal of Molecular Biology , vol.357 , Issue.4 , pp. 1144-1153
    • Rawat, U.1    Gao, H.2    Zavialov, A.3    Gursky, R.4    Ehrenberg, M.5    Frank, J.6
  • 8
    • 36749079267 scopus 로고    scopus 로고
    • Transfer RNA in the hybrid P/E state: Correlating molecular dynamics simulations with cryo-EM data
    • DOI 10.1073/pnas.0708094104
    • Li, W. and Frank, J. (2007) Transfer RNA in the hybrid P/E state: correlating molecular dynamics simulations with cryo-EM data. Proc. Natl Acad. Sci. USA, 104, 16540-16545. (Pubitemid 350211054)
    • (2007) Proceedings of the National Academy of Sciences of the United States of America , vol.104 , Issue.42 , pp. 16540-16545
    • Li, W.1    Frank, J.2
  • 12
    • 0035958587 scopus 로고    scopus 로고
    • The path of messenger RNA through the ribosome
    • DOI 10.1016/S0092-8674(01)00435-4
    • Yusupova, G.Z., Yusupov, M.M., Cate, J.H.D. and Noller, H.F. (2001) The path of messenger RNA through the ribosome. Cell, 106, 233-241. (Pubitemid 32772633)
    • (2001) Cell , vol.106 , Issue.2 , pp. 233-241
    • Yusupova, G.Zh.1    Yusupov, M.M.2    Cate, J.H.D.3    Noller, H.F.4
  • 13
    • 14544275165 scopus 로고    scopus 로고
    • From peptide-bond formation to cotranslational folding: Dynamic, regulatory and evolutionary aspects
    • DOI 10.1016/j.febslet.2004.11.063
    • Baram, D. and Yonath, A. (2005) From peptide-bond formation to cotranslational folding: dynamic, regulatory and evolutionary aspects. FEBS Lett., 579, 948-954. (Pubitemid 40361870)
    • (2005) FEBS Letters , vol.579 , Issue.4 SPEC. ISS. , pp. 948-954
    • Baram, D.1    Yonath, A.2
  • 15
    • 77956340277 scopus 로고    scopus 로고
    • Structural rearrangements of the ribosome at the tRNA proofreading step
    • Jenner, L., Demeshkina, N., Yusupova, G. and Yusupov, M. (2010) Structural rearrangements of the ribosome at the tRNA proofreading step. Nat. Struct. Mol. Biol., 17, 1072-1079.
    • (2010) Nat. Struct. Mol. Biol. , vol.17 , pp. 1072-1079
    • Jenner, L.1    Demeshkina, N.2    Yusupova, G.3    Yusupov, M.4
  • 16
    • 0034545829 scopus 로고    scopus 로고
    • Nucleotides of 18s rRNA surrounding mRNA codons at the human ribosomal A, P, and E sites: A crosslinking study with mRNA analogs carrying an aryl azide group at either the uracil or the guanine residue
    • DOI 10.1017/S1355838200000996
    • Demeshkina, N., Repkova, M., Ven'yaminova, A., Graifer, D. and Karpova, G. (2000) Nucleotides of 18S rRNA surrounding mRNA codons at the human ribosomal A, P and E sites, respectively: a cross-linking study with mRNA analogues carrying aryl azide group at either the uracil or the guanine residue. RNA, 6, 1727-1736. (Pubitemid 32001944)
    • (2000) RNA , vol.6 , Issue.12 , pp. 1727-1736
    • Demeshkina, N.1    Repkova, M.2    Ven'yaminova, A.3    Graifer, D.4    Karpova, G.5
  • 19
    • 0021293798 scopus 로고
    • Affinity labelling of rat liver ribosomal protein S26 by heptauridylate containing a 50-terminal alkylating group
    • Stahl, J. and Kobetz, N.D. (1984) Affinity labelling of rat liver ribosomal protein S26 by heptauridylate containing a 50-terminal alkylating group. Mol. Biol. Rep., 9, 219-222.
    • (1984) Mol. Biol. Rep. , vol.9 , pp. 219-222
    • Stahl, J.1    Kobetz, N.D.2
  • 20
    • 0022348395 scopus 로고
    • Investigations on the messenger RNA binding site of eukaryotic ribosomes by using reactive oligo(U) derivatives
    • Stahl, J. and Karpova, G.G. (1985) Investigation on the messenger RNA binding site of eukaryotic ribosomes by using reactive oligo(U) derivatives. Biomed. Biochim. Acta, 44, 1057-1064. (Pubitemid 16231365)
    • (1985) Biomedica Biochimica Acta , vol.44 , Issue.7-8 , pp. 1057-1064
    • Stahl, J.1    Karpova, G.G.2
  • 21
    • 0028109924 scopus 로고
    • Arrangement of mRNA at the decoding site of human ribosomes. 185 rRNA nucleotides and ribosomal proteins cross-linked to oligouridylate derivatives with alkylating groups at either the 3' or the 5' termini
    • DOI 10.1111/j.1432-1033.1994.tb20100.x
    • Malygin, A.A., Graifer, D.M., Bulygin, K.N., Zenkova, M.A., Yamkovoy, V.I., Stahl, J. and Karpova, G.G. (1994) Arrangement of mRNA at the decoding site of human ribosomes. 18S rRNA nucleotides and ribosomal proteins cross-linked to oligouridylate derivatives with alkylating groups at either the 30 or the 50-termini. Eur. J. Biochem., 226, 715-723. (Pubitemid 24379094)
    • (1994) European Journal of Biochemistry , vol.226 , Issue.2 , pp. 715-723
    • Malygin, A.A.1    Graifer, D.M.2    Bulygin, K.N.3    Zenkova, M.A.4    Yamkovoy, V.I.5    Stahl, A.6    Karpova, G.G.7
  • 22
    • 33644779804 scopus 로고    scopus 로고
    • +4 positions flanking the initiation codon with components of the mammalian 48S translation initiation complex
    • DOI 10.1101/gad.1397906
    • Pisarev, A.V., Kolupaeva, V.G., Pisareva, V.P., Merrick, W.C., Hellen, C.U.T. and Pestova, T.V. (2006) Specific functional interaction of nucleotides at key-3 and+4 positions flanking the initiation codon with components of the mammalian 48S translation initiation complex. Genes Dev., 20, 624-636. (Pubitemid 43345327)
    • (2006) Genes and Development , vol.20 , Issue.5 , pp. 624-636
    • Pisarev, A.V.1    Kolupaeva, V.G.2    Pisareva, V.P.3    Merrick, W.C.4    Hellen, C.U.T.5    Pestova, T.V.6
  • 23
    • 44649095899 scopus 로고    scopus 로고
    • Ribosomal position and contacts of mRNA in eukaryotic translation initiation complexes
    • DOI 10.1038/emboj.2008.90, PII EMBOJ200890
    • Pisarev, A.V., Kolupaeva, V.G., Yusupov, M.M., Hellen, C.U.T. and Pestova, T.V. (2008) Ribosomal position and contacts of mRNA in eukaryotic translation initiation complexes. EMBO J., 27, 1609-1621. (Pubitemid 351794036)
    • (2008) EMBO Journal , vol.27 , Issue.11 , pp. 1609-1621
    • Pisarev, A.V.1    Kolupaeva, V.G.2    Yusupov, M.M.3    Hellen, C.U.T.4    Pestova, T.V.5
  • 24
    • 77953537728 scopus 로고    scopus 로고
    • Eukaryote-specific motif of ribosomal protein S15 neighbors A site codon during elongation and termination of translation
    • Khairulina, J., Graifer, D., Bulygin, K., Ven'yaminova, A., Frolova, L. and Karpova, G. (2010) Eukaryote-specific motif of ribosomal protein S15 neighbors A site codon during elongation and termination of translation. Biochimie, 92, 820-825.
    • (2010) Biochimie , vol.92 , pp. 820-825
    • Khairulina, J.1    Graifer, D.2    Bulygin, K.3    Ven'Yaminova, A.4    Frolova, L.5    Karpova, G.6
  • 27
    • 0026072648 scopus 로고
    • Isolation of ribosomal subunits containing intact rRNA from human placenta. Estimation of functional activity of 80S ribosomes
    • Matasova, N.B., Myltseva, S.V., Zenkova, M.A., Graifer, D.M., Vladimirov, S.N. and Karpova, G.G. (1991) Isolation of ribosomal subunits containing intact rRNA from human placenta. Estimation of functional activity of 80S ribosomes. Anal. Biochem., 198, 219-223.
    • (1991) Anal. Biochem. , vol.198 , pp. 219-223
    • Matasova, N.B.1    Myltseva, S.V.2    Zenkova, M.A.3    Graifer, D.M.4    Vladimirov, S.N.5    Karpova, G.G.6
  • 28
    • 0141430706 scopus 로고    scopus 로고
    • H-phosphonate synthesis of oligoribonucleotides containing modified bases. I. Photoactivatable derivatives of oligoribonucleotides with perfluoroarylazide groups in heterocyclic bases
    • Repkova, M.N., Ivanova, T.M., Komarova, N.I., Meschaninova, M.I., Kuznetsova, M.A. and Ven'yaminova, A.G. (1999) H-phosphonate synthesis of oligoribonucleotides containing modified bases. I. Photoactivatable derivatives of oligoribonucleotides with perfluoroarylazide groups in heterocyclic bases. Russ. J. Bioorg. Chem., 25, 612-622.
    • (1999) Russ. J. Bioorg. Chem. , vol.25 , pp. 612-622
    • Repkova, M.N.1    Ivanova, T.M.2    Komarova, N.I.3    Meschaninova, M.I.4    Kuznetsova, M.A.5    Ven'Yaminova, A.G.6
  • 29
    • 0032339858 scopus 로고    scopus 로고
    • Localization of template in the decoding area by affinity modification of human ribosomes with photoactivated derivative of oligoribonucleotide pGUGUUU
    • Smolenskaya, I.A., Bulygin, K.N., Graifer, D.M., Ivanov, A.V., Ven'yaminova, A.G., Repkova, M.N. and Karpova, G.G. (1998) Localization of template in the decoding area by affinity modification of human ribosomes with photoactivated derivative of oligoribonucleotide pGUGUUU. Mol. Biol. (translated from Molekul. Biol.), 32, 233-241. (Pubitemid 128741743)
    • (1998) Molekulyarnaya Biologiya , vol.32 , Issue.2 , pp. 233-241
    • Smolenskaya, J.A.1    Bulygin, K.N.2    Graifer, D.M.3    Ivanov, A.V.4    Venyaminova, A.G.5    Repkova, M.N.6    Karpova, G.G.7
  • 30
    • 0014546343 scopus 로고
    • The ribosomal proteins of Escherichia coli. I. Purification of 30S ribosomal proteins
    • Hardy, S.J.S., Kurland, C.G., Voynow, P. and Mora, G. (1969) The ribosomal proteins of Escherichia coli. I. Purification of 30S ribosomal proteins. Biochemistry, 8, 2897-2905.
    • (1969) Biochemistry , vol.8 , pp. 2897-2905
    • Hardy, S.J.S.1    Kurland, C.G.2    Voynow, P.3    Mora, G.4
  • 31
    • 0037361107 scopus 로고    scopus 로고
    • Expression and purification of human ribosomal proteins S3, S5, S10, S19, and S26
    • DOI 10.1016/S1046-5928(02)00652-6
    • Malygin, A., Baranovskaya, O., Ivanov, A. and Karpova, G. (2003) Expression and purification of human ribosomal proteins S3, S5, S10, S19 and S26. Protein Expression Purif., 28, 57-62. (Pubitemid 36453178)
    • (2003) Protein Expression and Purification , vol.28 , Issue.1 , pp. 57-62
    • Malygin, A.1    Baranovskaya, O.2    Ivanov, A.3    Karpova, G.4
  • 34
    • 66049161006 scopus 로고    scopus 로고
    • Recent mechanistic insights into eukaryotic ribosomes
    • Rodnina, M. and Wintermeyer, W. (2009) Recent mechanistic insights into eukaryotic ribosomes. Curr. Opin. Cell Biol., 21, 435-443.
    • (2009) Curr. Opin. Cell Biol. , vol.21 , pp. 435-443
    • Rodnina, M.1    Wintermeyer, W.2
  • 35
    • 28544439977 scopus 로고    scopus 로고
    • Molecular biology: Structural roles for human translation factor elF3 in initiation of protein synthesis
    • DOI 10.1126/science.1118977
    • Siridechadilok, B., Fraser, C.S., Hall, R.J., Doudna, J.A. and Nogales, E. (2005) Structural roles for human translation factor eIF3 in initiation of protein synthesis. Science, 310, 1513-1515. (Pubitemid 41746350)
    • (2005) Science , vol.310 , Issue.5753 , pp. 1513-1515
    • Siridechadilok, B.1    Fraser, C.S.2    Hall, R.J.3    Doudna, J.A.4    Nogales, E.5
  • 37
    • 0029952108 scopus 로고    scopus 로고
    • Mass spectrometric analysis of 40 S ribosomal proteins from rat-1 fibroblasts
    • DOI 10.1074/jbc.271.45.28189
    • Louie, D.F., Resing, K.A., Lewis, T.S. and Ahn, N.G. (1996) Mass spectrometric analysis of 40 S ribosomal proteins from Rat-1 fibroblasts. J. Biol. Chem., 271, 28189-28198. (Pubitemid 26374629)
    • (1996) Journal of Biological Chemistry , vol.271 , Issue.45 , pp. 28189-28198
    • Louie, D.F.1    Resing, K.A.2    Lewis, T.S.3    Ahn, N.G.4
  • 38
    • 78049279370 scopus 로고    scopus 로고
    • Site-specific cleavage of the 40S ribosomal subunit reveals eukaryote-specific ribosomal protein S28 in the subunit head
    • Malygin, A.A. and Karpova, G.G. (2010) Site-specific cleavage of the 40S ribosomal subunit reveals eukaryote-specific ribosomal protein S28 in the subunit head. FEBS Lett., 584, 4396-4400.
    • (2010) FEBS Lett. , vol.584 , pp. 4396-4400
    • Malygin, A.A.1    Karpova, G.G.2
  • 39
    • 77951223749 scopus 로고    scopus 로고
    • Structural motifs of the bacterial ribosomal proteins S20, S18 and S16 that contact rRNA present in the eukaryotic ribosomal proteins S25, S26 and S27A, respectively
    • Malygin, A.A. and Karpova, G.G. (2010) Structural motifs of the bacterial ribosomal proteins S20, S18 and S16 that contact rRNA present in the eukaryotic ribosomal proteins S25, S26 and S27A, respectively. Nucleic Acids Res., 38, 2089-2098.
    • (2010) Nucleic Acids Res. , vol.38 , pp. 2089-2098
    • Malygin, A.A.1    Karpova, G.G.2
  • 40
    • 33751103912 scopus 로고    scopus 로고
    • Structural basis for messenger RNA movement on the ribosome
    • DOI 10.1038/nature05281, PII NATURE05281
    • Yusupova, G., Jenner, L., Rees, B., Moras, D. and Yusupov, M. (2006) Structural basis for messenger RNA movement on the ribosome. Nature, 444, 391-394. (Pubitemid 44764117)
    • (2006) Nature , vol.444 , Issue.7117 , pp. 391-394
    • Yusupova, G.1    Jenner, L.2    Rees, B.3    Moras, D.4    Yusupov, M.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.