From peptide-bond formation to cotranslational folding: Dynamic, regulatory and evolutionary aspects

FEBS Letters

Volumn 579, Issue 4 SPEC. ISS., 2005, Pages 948-954

  Baram, David ^a   Yonath, Ada ^a  

^a WEIZMANN INSTITUTE OF SCIENCE   (Israel)

Author keywords

Antibiotics selectivity; Ribosomal catalysis; Ribosome evolution; Ribosome recycling factor; Trigger factor

Indexed keywords

ANTIBIOTIC AGENT; AZITHROMYCIN; CARBOMYCIN; CLARITHROMYCIN; ERYTHROMYCIN; NUCLEOTIDE; PEPTIDE; PROTEIN SUBUNIT; RIBOZYME; ROXITHROMYCIN; SPIRAMYCIN; TROLEANDOMYCIN; PEPTIDYLTRANSFERASE; TRANSFER RNA;

CHEMICAL BINDING; CHEMICAL BOND; CHIRALITY; CONFERENCE PAPER; CONFORMATIONAL TRANSITION; ESCHERICHIA COLI; GENE FUSION; MOLECULAR DYNAMICS; MOLECULAR EVOLUTION; MOLECULAR INTERACTION; NUCLEIC ACID ANALYSIS; PEPTIDE SYNTHESIS; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTEIN FOLDING; PROTEIN STRUCTURE; PROTEIN TARGETING; REACTION ANALYSIS; RIBOSOME; SIGNAL TRANSDUCTION; STEREOCHEMISTRY; STRUCTURE ANALYSIS; TRANSLATION REGULATION; CHEMICAL STRUCTURE; CHEMISTRY; METABOLISM; PHYSIOLOGY; PROTEIN SYNTHESIS; REVIEW; RNA TRANSLATION;

EVOLUTION, MOLECULAR; MOLECULAR STRUCTURE; PEPTIDE CHAIN ELONGATION, TRANSLATIONAL; PEPTIDYL TRANSFERASES; PROTEIN BIOSYNTHESIS; PROTEIN CONFORMATION; PROTEIN FOLDING; RIBOSOMES; RNA, TRANSFER;

EID: 14544275165     PISSN: 00145793     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.febslet.2004.11.063     Document Type: Conference Paper

References (51)

1. A. Bashan Mol. Cell 11 2003 91 102
2. Agmon, I., Bashan, A., Zarivach, R. and Yonath, A. (2005) J. Mol. Biol. (in press)
3. J. Harms Cell 107 2001 679 688
4. B.S. Cooperman, T. Wooten, D.P. Romero, and R.R. Traut Biochem. Cell Biol. 73 1995 1087 1094
5. A. Bashan Biopolymers 70 2003 19 41
6. I. Agmon Eur. J. Biochem. 270 2003 2543 2556
7. I. Agmon FEBS Lett. 567 2004 20 26
8. S. Dorner, N. Polacek, U. Schulmeister, C. Panuschka, and A. Barta Biochem. Soc. Trans. 30 2002 1131 1136
9. J.S. Weinger, K.M. Parnell, S. Dorner, R. Green, and S.A. Strobel Nat. Struct. Mol. Biol. 11 2004 1101 1106
10. A. Sievers, M. Beringer, M.V. Rodnina, and R. Wolfenden Proc. Natl. Acad. Sci. USA 101 2004 7897 7901
11. E.M. Youngman, J.L. Brunelle, A.B. Kochaniak, and R. Green Cell 117 2004 589 599
12. S.T. Gregory, and A.E. Dahlberg Nat. Struct. Mol. Biol. 11 2004 586 587
13. D.F. Kim, and R. Green Mol. Cell 4 1999 859 864
14. P.B. Moore, and T.A. Steitz RNA 9 2003 155 159
15. A. Yonath Chembiochem 4 2003 1008 1017
16. A. Yonath Biol. Chem. 384 2003 1411 1419
17. A. Yonath Annu. Rev. Biophys. Biomol. Struct. 31 2002 257 273
18. A. Zamir, R. Miskin, Z. Vogel, and D. Elson Methods Enzymol. 30 1974 406 426
19. M.A. Bayfield, A.E. Dahlberg, U. Schulmeister, S. Dorner, and A. Barta Proc. Natl. Acad. Sci. USA 98 2001 10096 10101
20. J. Wower, S.V. Kirillov, I.K. Wower, S. Guven, S.S. Hixson, and R.A. Zimmermann J. Biol. Chem. 275 2000 37887 37894
21. N. Polacek, M.J. Gomez, K. Ito, L. Xiong, Y. Nakamura, and A. Mankin Mol. Cell 11 2003 103 112
22. J.L. Hansen, P.B. Moore, and T.A. Steitz J. Mol. Biol. 330 2003 1061 1075
23. R. Zarivach J. Phys. Org. Chem. 17 2004 901 912
24. J. Harms, F. Schluenzen, P. Fucini, H. Bartels, and A. Yonath BMC Biol. 2 2004 1 10
25. F. Schluenzen, R. Zarivach, J. Harms, A. Bashan, A. Tocilj, R. Albrecht, A. Yonath, and F. Franceschi Nature 413 2001 814 821
26. F. Schluenzen, E. Pyetan, A. Yonath, and J. Harms Mol. Microbiol. 54 2004 1287 1294
27. M.M. Yusupov, G.Z. Yusupova, A. Baucom, K. Lieberman, T.N. Earnest, J.H. Cate, and H.F. Noller Science 292 2001 883 896
28. C.A. Woolhead, P.J. McCormick, and A.E. Johnson Cell 116 2004 725 736
29. S.A. Etchells, and F.U. Hartl Nat. Struct. Mol. Biol. 11 2004 391 392
30. P. Nissen, J. Hansen, N. Ban, P.B. Moore, and T.A. Steitz Science 289 2000 920 930
31. R. Berisio, F. Schluenzen, J. Harms, A. Bashan, T. Auerbach, D. Baram, and A. Yonath Nat. Struct. Biol. 10 2003 366 370
32. R.J. Gilbert, P. Fucini, S. Connell, S.D. Fuller, K.H. Nierhaus, C.V. Robinson, C.M. Dobson, and D.I. Stuart Mol. Cell. 14 2004 57 66
33. H. Nakatogawa, and K. Ito Cell 108 2002 629 636
34. J. Unge Structure 6 1998 1577 1586
35. N. Davydova, V. Streltsov, M. Wilce, A. Liljas, and M. Garber J. Mol. Biol. 322 2002 635 644
36. H.G. Wittmann Mol. Gen. Genet. 127 1973 175 189
37. I.S. Gabashvili, S.T. Gregory, M. Valle, R. Grassucci, M. Worbs, M.C. Wahl, A.E. Dahlberg, and J. Frank Mol. Cell. 8 2001 181 188
38. B. Bozdogan Clin. Microbiol. Infect. 9 2003 741 745
39. S. Pereyre Antimicrob. Agents Chemother. 46 2002 3142 3150
40. A. Yonath, and A. Bashan Annu. Rev. Microbiol. 58 2004 233 251
41. T. Auerbach, A. Bashan, and A. Yonath Trends Biotechnol. 22 2004 570 576
42. F. Schluenzen, J.M. Harms, F. Franceschi, H.A. Hansen, H. Bartels, R. Zarivach, and A. Yonath Structure 11 2003 329 338
43. R. Berisio, J. Harms, F. Schluenzen, R. Zarivach, H.A. Hansen, P. Fucini, and A. Yonath J. Bacteriol. 185 2003 4276 4279
44. B. Weisblum Antimicrob. Agents Chemother. 39 1995 577 585
45. F.U. Hartl, and M. Hayer-Hartl Science 295 2002 1852 1858
46. J. Frydman Annu. Rev. Biochem. 70 2001 603 647
47. M. Eisenstein G. Pifat Supramolecular Structure and Function Vol. 4 1994 Balaban Press Rehovot 213 246
48. A. Yonath, K.R. Leonard, and H.G. Wittmann Science 236 1987 813 816
49. L. Ferbitz, T. Maier, H. Patzelt, B. Bukau, E. Deuerling, and N. Ban Nature 431 2004 590 596
50. G. Kramer Nature 419 2002 171 174
51. N. Ban, P. Nissen, J. Hansen, P.B. Moore, and T.A. Steitz Science 289 2000 905 920