Applicability of sampling environmental DNA for aquatic diseases

Bulletin of the European Association of Fish Pathologists

Volumn 32, Issue 2, 2012, Pages 69-76

  Longsnaw, M ^a   Feist, S W ^a   Oidtmann, B ^a   Stone, D M ^a  

^a CENTRE FOR ENVIRONMENT   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

GYRODACTYLUS SALARIS;

EID: 84860140446     PISSN: 01080288     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Review

References (33)

1. Appleby C and Mo TA (1997). Population dynamics of Gyrodactylus salaris (Monogenea) infecting Atlantic salmon, Salmo salar, parr in the River Batnfjordselva, Norway. Journal of Parasitology 83, 23-30.
2. Audemard C, Reece KS and Burreson EM (2004). Real-time PCR for detection and quantification of the protistan parasite Perkinsus marinus in environmental waters. Applied Environmental Microbiology 70, 6611-6618. (Pubitemid 39518570)
3. Beja-Pereira A, Oliveira R, Alves PC, Schwartz MK and Luikart G (2009). Advancing ecological understandings through technological transformations in noninvasive genetics. Molecular Ecology Resources 9, 1279-1301.
4. Beran V, Matlova L, Dvorska L, Svastova P and Pavlik I (2006). Distribution of mycobacteria in clinically healthy ornamental fish and their aquarium environment. Journal of Fish Diseases 29, 383-393.
5. Borin S, Crotti E, Mapelli F, Tamagnini I, Corselli C and Daffonchio D (2008). DNA is preserved and maintains transforming potential after contact with brines of the deep anoxic hypersaline lakes of the Eastern Mediterranean Sea. Saline Systems 4, 1-10.
6. Cable J. and Harris PD (2002). Gyrodactylid developmental biology: Historical review, current status and future trends. International Journal for Parasitology 32, 255-280. (Pubitemid 34142471)
7. Cable J, Harris PD and Bakke TA (2000). Population growth of Gyrodactylus salaris (Monogenea) on Norwegian and Baltic Atlantic salmon (Salmo salar) stocks. Parasitology 121, 621-629. (Pubitemid 32063036)
8. Dejean T, Valentini A, Duparc A, Pellier-Cuit S, Pompanon F, Taberlet P and Miaud C (2011). Persistence of environmental DNA in freshwater ecosystems. PLoS ONE 6, e23398.
9. Ficetola GF, Miaud C, Pompanon F and Taberlet P (2008). Species detection using environmental DNA from water samples. Biology Letters 4, 423-425. (Pubitemid 351961462)
10. Gregory A, Munro LA, Snow M, Urquhart KL, Murray AG and Raynard RS (2009). An experimental investigation on aspects of infectious salmon anaemia virus (ISAV) infection dynamics in seawater Atlantic salmon, Salmo salar L. Journal of Fish Diseases 32, 481-489.
11. Griffin MJ, Pote LM, Camus AC, Mauel MJ, Greenway TE and Wise DJ (2009). Application of a real-time PCR assay for the detection of Henneguya ictaluri in commercial channel catfish ponds. Diseases of Aquatic Organisms 86, 223-233.
12. Griffin MJ, Wise DJ, Yost MC, Doffitt CM, Pote LM, Greenway TE and Khoo LH (2010). A duplex real-time polymerase chain reaction assay for differentiation between Bolbophorus damnificiis and Bolbophorus type II species cercariae. Journal of Veterinary Diagnostic Investigations 22, 615-622.
13. Haile J, Froese DG, MacPhee RDE, Roberts RG, Arnold LJ, Reyes AV, Rasmussen M, Nielsen R, Brook BW, Robinson S, Demuro M, Gilbert MTP, Munch K, Austin JJ, Cooper A, Barnes I, Möller P and Willerslev E (2009). Ancient DNA reveals late survival of mammoth and horse in interior Alaska. Proceedings of the National Academy of Science USA 106, 22352-22357.
14. Hallett SL and Bartholomew JL (2006). Application of a real-time PCR assay to detect and quantify the myxozoan parasite Ceratomyxa shasta in river water samples. Diseases of Aquatic Organisms 71, 109-118. (Pubitemid 44284748)
15. Hallett SL and Bartholomew JL (2009). Development and application of a duplex QPCR for river water samples to monitor the myxozoan parasite Parvicapsula minibicomis. Diseases of Aquatic Organisms 86, 39-50.
16. Harvey CT, Qureshi SA and Maclsaac HJ (2009). Detection of a colonizing, aquatic, non-indigenous species. Diversity and Distributions 15, 429-437.
17. Janzen DH, Hallwachs W, Blandin P, Burns JM, Cadiou JM, Chacon I, Dapkey T, Deans AR, Epstein ME, Espinoza B, Franclemont JG, Haber WA, Hajibabaei M, Hall JPW, Hebert PDN, Gauld ID, Harvey DJ, Hausmann A, Kitching IJ, Lafontaine D, Landry JF, Lemaire C, Miller JY, Miller JS, Miller L, Miller SE, Montero J, Munroe E, Green SR, Ratnasingham S, Rawlins JE, Robbins RK, Rodriguez JJ, Rougerie R, Sharkey MJ, Smith MA, Solis MA, Sullivan JB, Thiaucourt P, Wahl DB, Weller SJ, Whitfield JB, Willmott KR, Wood DM, Woodley NE and Wilson JJ (2009). Integration of DNA barcoding into an ongoing inventory of complex tropical biodiversity. Molecular Ecology Resources 9, 1-26.
18. Jerde CL, Mahon AR, Chadderton WL and Lodge DM (2011). "Sight-unseen" detection of rare aquatic species using environmental DNA. Conservation Letters 4, 150-157.
19. Jiang J, Alderisio KA, Singh A and Xiao L (2005). Development of procedures for direct extraction of Cryptosporidium DNA from water concentrates and for relief of PCR inhibitors. Applied Environmental Microbiology 71, 1135-1141. (Pubitemid 40396647)
20. Lievens B, Frans I, Heusdens C, Justé A, Jonstrup SP, Lieffrig F and Willems KA (2011). Rapid detection and identification of viral and bacterial fish pathogens using a DNA array-based multiplex assay. Journal of Fish Diseases 34, 861-875.
21. Matsui K, Honjo M and Kawabata Z (2001). Estimation of the fate of dissolved DNA in thermally stratified lake water from the stability of exogenous plasmid DNA. Aquatic Microbial Ecology 26, 95-102. (Pubitemid 34235305)
22. McBeath AJA, Penston MJ, Snow M, Cook PF, Bricknell IR and Cunningham CO (2006). Development and application of real-time PCR for specific detection of Lepeophtheirus salmonis and Caligus elongatus larvae in Scottish plankton samples. Diseases of Aquatic Organisms 73, 141-150. (Pubitemid 46142149)
23. Olstad K, Bachmann L and Bakke TA (2009). Phenotypic plasticity of taxonomie and diagnostic structures in gyrodactylosiscausing flatworms (Monogenea, Platyhelminthes). Parasitology 136, 1305-1315.
24. Olstad K, Cable J, Robertsen G and Bakke TA (2006). Unpredicted transmission strategy of Gyrodactylus salaris (Monogenea: Gyrodactylidae): Survival and infectivity of parasites on dead hosts. Parasitology 133, 33-41. (Pubitemid 43886435)
25. Peeler EJ and Oidtmann BC (2008). Demonstrating freedom from Gyrodactylus salaris (Monogenea: Gyrodactylidae) in farmed rainbow trout Oncorhynchus mykiss. Diseases of Aquatic Organisms 79, 47-56. (Pubitemid 351547549)
26. Pegard A, Miquel C, Valentini A, Coissac E, Bouvier F, François D, Taberlet P, Engel E and Pompanon F (2009). Universal DNAbased methods for assessing the diet of grazing livestock and wildlife from feces. Journal of Agricultural Food Chemistry 57, 5700-5706.
27. Urquhart K, Murray AG, Gregory A, O'Dea M, Munro LA, Smail DA, Shanks AM and Raynard RS (2008). Estimation of infectious dose and viral shedding rates for infectious pancreatic necrosis virus in Atlantic salmon, Salmo salar L., post-smolts. Journal of Fish Diseases 31, 879-887.
28. Valentini A, Pompanon F and Taberlet P (2009). DNA barcoding for ecologists. Trends in Ecology and Evolution 24, 110-117.
29. Van Nieuwstadt AP, Dijkstra SG and Haenen OLM (2001). Persistence of herpesvirus of eel Herpesvirus anguillae in farmed European eel Anguilla anguilla. Diseases of Aquatic Organisms 45, 103-107. (Pubitemid 32632301)
30. Whipps CM, Dougan ST and Kent ML (2007). Mycobacterium haemophilum infections of zebrafish (Danio rerio) in research facilities. FEMS Microbiology Letters 270, 21-26. (Pubitemid 46597353)
31. Whipps CM, Matthews JL and Kent ML (2008). Distribution and genetic characterization of Mycobacterium chelonae in laboratory zebrafish (Danio rerio). Diseases of Aquatic Organisms 82, 45-54.
32. Yuasa K, Ito T and Sano M (2008). Effect of water temperature on mortality and virus shedding in carp experimentally infected with koi herpesvirus. Fish Pathology 43, 83-85.
33. Zietara MS, Rokicka M, Stojanovski S and Lumme J (2010). Introgression of distant mitochondria into the genome of Gyrodactylus salaris: Nuclear and mitochondrial markers are necessary to identify parasite strains. Acta Parasitologica 55, 20-28.