메뉴 건너뛰기




Volumn 856, Issue , 2012, Pages 315-332

Nonredundant representation of ancestral recombinations graphs

Author keywords

Ancestral recombinations graph; ARG; Coalescent; Minimal descriptor; Nonredundant; Population simulators; Redundancies; Wright Fisher

Indexed keywords

ARTICLE; BIOLOGICAL MODEL; COMPUTER GRAPHICS; GENETIC RECOMBINATION; HUMAN; MOLECULAR EVOLUTION; PHYLOGENY;

EID: 84860139000     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-61779-585-5_13     Document Type: Article
Times cited : (1)

References (21)
  • 1
    • 0020744702 scopus 로고
    • Properties of a neutral allele model with intragenic recombination
    • April
    • R. R. Hudson. Properties of a neutral allele model with intragenic recombination. Theoretical Population Biology, 23(2):183-201, April 1983.
    • (1983) Theoretical Population Biology , vol.23 , Issue.2 , pp. 183-201
    • Hudson, R.R.1
  • 2
    • 0000557367 scopus 로고    scopus 로고
    • An ancestral recombinations graph
    • P Donnelly and S Tavare Eds IMA vols in Mathematics and its Applications
    • R. C. Griffiths and P. Marjoram. An ancestral recombinations graph. Progress in Population Genetics and Human Evolution (P Donnelly and S Tavare Eds) IMA vols in Mathematics and its Applications, 87:257-270, 1997.
    • (1997) Progress in Population Genetics and Human Evolution , vol.87 , pp. 257-270
    • Griffiths, R.C.1    Marjoram, P.2
  • 4
    • 55249088335 scopus 로고    scopus 로고
    • Estimating the ancestral recombinations graph (ARG) as compatible networks of SNP patterns
    • Laxmi Parida, Marta Melé, Francesc Calafell, Jaume Bertranpetit, and Genographic Consortium. Estimating the ancestral recombinations graph (ARG) as compatible networks of SNP patterns. Journal of Computational Biology, 15 (9):1-22, 2008.
    • (2008) Journal of Computational Biology , vol.15 , Issue.9 , pp. 1-22
    • Laxmi, P.1    Marta, M.2    Francesc, C.3    Jaume, B.4    Genographic, C.5
  • 8
    • 79951544369 scopus 로고    scopus 로고
    • A minimal descriptor of an ancestral recombinations graph
    • Laxmi Parida, Pier Palamara, and Asif Javed. A minimal descriptor of an ancestral recombinations graph. BMC Bioinformatics, 12(Suppl 1): S6, 2011. http://www.biomedcentral.com/1471-2105/12/S1/S6.
    • (2011) BMC Bioinformatics , vol.12 , Issue.SUPPL. 1
    • Laxmi Paridapier, P.1    Asif, J.2
  • 9
    • 0036184745 scopus 로고    scopus 로고
    • Generating samples under a Wright-Fisher neutral model of genetic variation
    • Feb
    • R. R. Hudson. Generating samples under a Wright-Fisher neutral model of genetic variation. Bioinformatics, 18:337-338, Feb 2002.
    • (2002) Bioinformatics , vol.18 , pp. 337-338
    • Hudson, R.R.1
  • 10
    • 24644505748 scopus 로고    scopus 로고
    • Simupop: A forward-time population genetics simulation environment
    • Bo Peng, and Marek Kimmel. simuPOP: A forward-time population genetics simulation environment. Bioinformatics, 21:3686-3687, 2005.
    • (2005) Bioinformatics , vol.21 , pp. 3686-3687
    • Bo, P.1    Marek, K.2
  • 11
    • 56649111423 scopus 로고    scopus 로고
    • A flexible forward simulator for populations subject to selection and demography
    • RD. Hernandez. A flexible forward simulator for populations subject to selection and demography. Bioinformatics, 24:2786-2787, 2008.
    • (2008) Bioinformatics , vol.24 , pp. 2786-2787
    • Hernandez, R.D.1
  • 12
    • 52449110029 scopus 로고    scopus 로고
    • Balding fregene: Simulation of realistic sequence-level data in populations and ascertained samples
    • doi:10.1186/1471-2105-9-364
    • Marc Chadeau-Hyam, Clive J Hoggart, Paul F O'Reilly, John C Whittaker, Maria De Iorio, and David J Balding. Fregene: Simulation of realistic sequence-level data in populations and ascertained samples. BMC Bioinformatics, 9, 2008. DOI doi:10.1186/1471-2105-9-364.
    • (2008) BMC Bioinformatics , vol.9
    • Marc, C.-H.1    Clive, J.H.2    Paul, F.3    O'Reilly, J.C.4    Whittaker, M.5    De Iorio, D.J.6
  • 13
    • 34547830810 scopus 로고    scopus 로고
    • Genome a rapid coalescent-based whole genome simulator
    • Liming Liang, Sebastian Zllner, and Goncalo R. Abecasis. Genome: A rapid coalescent-based whole genome simulator. Bioinformatics, 23 (12):15651567, 2007.
    • (2007) Bioinformatics , vol.23 , Issue.12 , pp. 15651567
    • Liming, L.1    Sebastian, Z.2    Goncalo, R.A.3
  • 14
    • 45849134174 scopus 로고    scopus 로고
    • Bustamante and Magnus Nordborg. xploring Population Genetic Models with Recombination Using Efficient Forward-Time Simulations
    • Badri Padhukasahasram and Paul Marjoram and Jeffrey D. Wall and Carlos D. Bustamante and Magnus Nordborg. xploring Population Genetic Models With Recombination Using Efficient Forward-Time Simulations. Genetics, 178(4):24172427, 2008.
    • (2008) Genetics , vol.178 , Issue.4 , pp. 24172427
    • Badri, P.1    Paul, M.2    Jeffrey, D.3    Wall, C.D.4
  • 15
    • 27544497650 scopus 로고    scopus 로고
    • Calibrating a coalescent simulation of human genome sequence variation
    • Nov
    • S. F. Schaffner, C. Foo, S. Gabriel, D. Reich, M. J. Daly, and D. Altshuler. Calibrating a coalescent simulation of human genome sequence variation. Genome Res., 15:1576-1583, Nov 2005.
    • (2005) Genome Res. , vol.15 , pp. 1576-1583
    • Schaffner, S.F.1    Foo, C.2    Gabriel, S.3    Reich, D.4    Daly, M.J.5    Altshuler, D.6
  • 16
    • 4644333804 scopus 로고    scopus 로고
    • SelSim: A program to simulate population genetic data with natural selection and recombination
    • Spencer CC and Coop G. SelSim: A program to simulate population genetic data with natural selection and recombination. Bioinformatics, 12:20:3673-5, 2004.
    • (2004) Bioinformatics , vol.12 , Issue.20 , pp. 3673-3675
    • Spencer, C.C.1    Coop, G.2
  • 17
    • 0033150745 scopus 로고    scopus 로고
    • Recombination as a point process along sequences
    • Carsten Wiuf and Jotun Hein. Recombination as a point process along sequences. Theoretical Population Biology, 55:248-259, 1999.
    • (1999) Theoretical Population Biology , vol.55 , pp. 248-259
    • Carsten, W.1    Jotun, H.2
  • 18
    • 31344468046 scopus 로고    scopus 로고
    • Approximating the coalescent with recombination
    • Sep
    • Gilean McVean and Niall Cardin. Approximating the coalescent with recombination. Phil. Trans. R. Soc. B, 360:1387-1393, Sep 2005.
    • (2005) Phil. Trans. R. Soc. B. , vol.360 , pp. 1387-1393
    • Gilean, M.1    Niall, C.2
  • 19
    • 33646348730 scopus 로고    scopus 로고
    • Fast coalescent simulation
    • Jan
    • P. Marjoram and J. D. Wall. Fast coalescent simulation. BMC Genetics, 7(16), Jan 2006.
    • (2006) BMC Genetics , vol.7 , pp. 16
    • Marjoram, P.1    Wall, J.D.2
  • 20
    • 61449135985 scopus 로고    scopus 로고
    • Fast and flexible simulation of DNA sequence data
    • Jan
    • G. K. Chen, P. Marjoram, and J. D. Wall. Fast and flexible simulation of DNA sequence data. Genome Res., 19:136-142, Jan 2009.
    • (2009) Genome Res. , vol.19 , pp. 136-142
    • Chen, G.K.1    Marjoram, P.2    Wall, J.D.3
  • 21
    • 37249005219 scopus 로고    scopus 로고
    • On recombination-induced multiple and simultaneous coalescent events
    • December
    • Joanna L. Davies, Frantiek Simank, Rune Lyngs, Thomas Mailund, and Jotun Hein. On recombination-induced multiple and simultaneous coalescent events. Genetics, 177:2151-2160, December 2007.
    • (2007) Genetics , vol.177 , pp. 2151-2160
    • Joanna, L.1    Davies Siman. F, K.2    Rune, L.3    Thomas, M.4    Jotun, H.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.