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Volumn 15, Issue 9, 2008, Pages 1133-1154

Estimating the ancestral recombinations graph (ARG) as compatible networks of SNP patterns

(23)  Parida, Laxmi n   Melé, Marta d,n   Calafell, Francesc d   Bertranpetit, Jaume d   Schurr, Theodore G a   Santos, Fabrício R b   Quintana Murci, Lluis c   Comas, David d   Tyler Smith, Chris e   Zalloua, Pierre A f   Balanovska, Elena g   Balanovsky, Oleg g   Behar, Doron M h   Mitchell, R John i   Jin, Li j   Soodyall, Himla k   Pitchappan, Ramasamy l   Cooper, Alan m   Royyuru, Ajay K n   Rosset, Saharon o   more..


Author keywords

ARG; Gene clusters; Genomic rearrangements; Recombinations; Strings

Indexed keywords

MITOCHONDRIAL DNA;

EID: 55249088335     PISSN: 10665277     EISSN: None     Source Type: Journal    
DOI: 10.1089/cmb.2008.0065     Document Type: Article
Times cited : (23)

References (21)
  • 1
    • 34347363148 scopus 로고    scopus 로고
    • Behar, D.M., Rosset, S., Blue-Smith, J., et al. 2007. The genographic project public participation mitochondrial DNA database. PLoS Genet. 3.
    • Behar, D.M., Rosset, S., Blue-Smith, J., et al. 2007. The genographic project public participation mitochondrial DNA database. PLoS Genet. 3.
  • 2
    • 0034791035 scopus 로고    scopus 로고
    • High-resolution haplotype structure in the human genome
    • Daly, M.J., Rioux, J.D., Schaffner, S.F., et al. 2001. High-resolution haplotype structure in the human genome. Nat. Genet. 29, 229-232.
    • (2001) Nat. Genet , vol.29 , pp. 229-232
    • Daly, M.J.1    Rioux, J.D.2    Schaffner, S.F.3
  • 4
    • 18444369013 scopus 로고    scopus 로고
    • The structure of haplotype blocks in the human genome
    • Gabriel, S.B., Schaffner, S.F., Nguyen, H., et al. 2002. The structure of haplotype blocks in the human genome. Science 296, 2225-2229.
    • (2002) Science , vol.296 , pp. 2225-2229
    • Gabriel, S.B.1    Schaffner, S.F.2    Nguyen, H.3
  • 5
    • 0027553807 scopus 로고
    • A technique for drawing directed graphs
    • Gansner, E.R., Koutsofios, E., North, S.C., et al. 1993. A technique for drawing directed graphs. Software Eng. 19, 214-230.
    • (1993) Software Eng , vol.19 , pp. 214-230
    • Gansner, E.R.1    Koutsofios, E.2    North, S.C.3
  • 6
    • 37049023841 scopus 로고    scopus 로고
    • A decomposition theory for phylogenetic networks and incompatible characters
    • Gusfield, D., Bansal, V., Bafna, V., et al. 2007. A decomposition theory for phylogenetic networks and incompatible characters. J. Comput. Biol. 14, 1247-1272.
    • (2007) J. Comput. Biol , vol.14 , pp. 1247-1272
    • Gusfield, D.1    Bansal, V.2    Bafna, V.3
  • 7
    • 35348983887 scopus 로고    scopus 로고
    • A second generation human haplotype map of over 3.1 million SNPs
    • International HapMap Consortium
    • International HapMap Consortium. 2007. A second generation human haplotype map of over 3.1 million SNPs. Nature 449, 851-861.
    • (2007) Nature , vol.449 , pp. 851-861
  • 8
    • 0037713754 scopus 로고    scopus 로고
    • Minimum description length block finder, a method to identify haplotype blocks and to compare the strength of block boundaries
    • Mannila, H., Koivisto, M., Perola, M., et al. 2003. Minimum description length block finder, a method to identify haplotype blocks and to compare the strength of block boundaries. Am. J. Hum. Genet. 73, 86-94.
    • (2003) Am. J. Hum. Genet , vol.73 , pp. 86-94
    • Mannila, H.1    Koivisto, M.2    Perola, M.3
  • 9
    • 33751112507 scopus 로고    scopus 로고
    • Mapping trait loci by use of inferred ancestral recombination graphs
    • Minichiello, M.J., and Durbin, R. 2006. Mapping trait loci by use of inferred ancestral recombination graphs. Am. J. Hum. Genet. 79, 910-922.
    • (2006) Am. J. Hum. Genet , vol.79 , pp. 910-922
    • Minichiello, M.J.1    Durbin, R.2
  • 11
    • 0035941029 scopus 로고    scopus 로고
    • Blocks of limited haplotype diversity revealed by high-resolution scanning of human chromosome 21
    • Patil, N., Berno, A.J., Hinds, D.A., et al. 2001. Blocks of limited haplotype diversity revealed by high-resolution scanning of human chromosome 21. Science 294, 1719-1723.
    • (2001) Science , vol.294 , pp. 1719-1723
    • Patil, N.1    Berno, A.J.2    Hinds, D.A.3
  • 12
    • 0019424782 scopus 로고
    • Comparison of phylogenetic trees
    • Robinson, D.F., and Foulds, L.R. 1981. Comparison of phylogenetic trees. Math. Biosci. 53, 131-147.
    • (1981) Math. Biosci , vol.53 , pp. 131-147
    • Robinson, D.F.1    Foulds, L.R.2
  • 13
    • 2342667371 scopus 로고    scopus 로고
    • Evolution of the O alleles of the human ABO blood group gene
    • Roubinet, F., Despiau, S., Calafell, F., et al. 2004. Evolution of the O alleles of the human ABO blood group gene. Transfusion 44, 707-715.
    • (2004) Transfusion , vol.44 , pp. 707-715
    • Roubinet, F.1    Despiau, S.2    Calafell, F.3
  • 14
    • 27544497650 scopus 로고    scopus 로고
    • Calibrating a coalescent simulation of human genome sequence variation
    • Schaffner, S.F., Foo, C., Gabriel, S., et al. 2005. Calibrating a coalescent simulation of human genome sequence variation. Genome Res. 15, 1576-1583.
    • (2005) Genome Res , vol.15 , pp. 1576-1583
    • Schaffner, S.F.1    Foo, C.2    Gabriel, S.3
  • 15
    • 33747429789 scopus 로고    scopus 로고
    • Counting all possible ancestral configurations of sample sequences in population genetics
    • Song, Y.S., Lyngso, R., and Hein, J. 2006. Counting all possible ancestral configurations of sample sequences in population genetics. IEEE/ACM Trans. Comput. Biol. Bioinform. 3, 239-251.
    • (2006) IEEE/ACM Trans. Comput. Biol. Bioinform , vol.3 , pp. 239-251
    • Song, Y.S.1    Lyngso, R.2    Hein, J.3
  • 16
    • 4444240188 scopus 로고    scopus 로고
    • Finding founder sequences from a set of recombinants
    • Ukkonen, E. 2002. Finding founder sequences from a set of recombinants. Proc. WABI 2542, 277-286.
    • (2002) Proc. WABI , vol.2542 , pp. 277-286
    • Ukkonen, E.1
  • 17
    • 0036844238 scopus 로고    scopus 로고
    • Distribution of recombination crossovers and the origin of haplotype blocks: The interplay of population history, recombination, and mutation
    • Wang, N., Akey, J.M., Zhang, K., et al. 2002. Distribution of recombination crossovers and the origin of haplotype blocks: the interplay of population history, recombination, and mutation. Am. J. Hum. Genet. 71, 1227-1234.
    • (2002) Am. J. Hum. Genet , vol.71 , pp. 1227-1234
    • Wang, N.1    Akey, J.M.2    Zhang, K.3
  • 18
    • 0017481191 scopus 로고
    • Is the most frequent allele the oldest?
    • Watterson, G.A., and Guess, H.A. 1977. Is the most frequent allele the oldest? Theor. Popul. Biol. 11, 141-160.
    • (1977) Theor. Popul. Biol , vol.11 , pp. 141-160
    • Watterson, G.A.1    Guess, H.A.2
  • 19
    • 84963104299 scopus 로고
    • A consistency test for phylogenies based on contemporaneous species
    • Wilson, E.O. 1965. A consistency test for phylogenies based on contemporaneous species. Syst. Zool. 14, 214-220.
    • (1965) Syst. Zool , vol.14 , pp. 214-220
    • Wilson, E.O.1
  • 20
    • 37849030797 scopus 로고    scopus 로고
    • Improved algorithms for inferring the minimum mosaic of a set of recombinants
    • Wu, Y., and Gusfield, D. 2007. Improved algorithms for inferring the minimum mosaic of a set of recombinants. Lect. Notes Comput. Sci. 4580, 150-161.
    • (2007) Lect. Notes Comput. Sci , vol.4580 , pp. 150-161
    • Wu, Y.1    Gusfield, D.2
  • 21
    • 0037188541 scopus 로고    scopus 로고
    • A dynamic programming algorithm for haplotype block partitioning
    • Zhang, K., Deng, M., Chen, T., et al. 2002. A dynamic programming algorithm for haplotype block partitioning. Proc. Natl. Acad. Sci. 99, 7335-7339.
    • (2002) Proc. Natl. Acad. Sci , vol.99 , pp. 7335-7339
    • Zhang, K.1    Deng, M.2    Chen, T.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.