Paleoclimate effects and geographic barriers shape regional population genetic structure of blackbrush (Coleogyne ramosissima: Rosaceae)

Botany

Volumn 90, Issue 4, 2012, Pages 293-299

  Richardson, Bryce A ^a   Meyer, Susan E ^a  

^a USDA FOREST SERVICE   (United States)

Author keywords

Amplified fragment length polymorphisms; Biogeography; Colorado plateau; Mojave; Postglacial colonization

Indexed keywords

COLONIZATION; DEMOGRAPHIC HISTORY; DISJUNCT DISTRIBUTION; ECOTONE; ENVIRONMENTAL DISTURBANCE; ENVIRONMENTAL RESTORATION; GENETIC STRUCTURE; GEOGRAPHICAL VARIATION; HETEROZYGOSITY; HOLOCENE; METAPOPULATION; PALEOCLIMATE; PERSISTENCE; PLEISTOCENE; POLYMORPHISM; POSTGLACIAL; SHRUB; SHRUBLAND;

COLORADO PLATEAU; MOJAVE DESERT; NORTH AMERICA; UNITED STATES;

COLEOGYNE RAMOSISSIMA; NEOTOMA; ROSACEAE;

EID: 84860113289     PISSN: 19162804     EISSN: None     Source Type: Journal    
DOI: 10.1139/B2012-002     Document Type: Article

References (35)

1. Beatley, J.C. 1974. Phenological events and their environmental triggers in the Mojave Desert ecosystems. Ecology, 55(4): 856-863. doi:10.2307/1934421.
2. Cavalli-Sforza, L.L., and Edwards, A.W.F. 1967. Phylogenetic analysis: models and estimation procedures. Evolution, 21(3): 550-570. doi:10.2307/2406616.
3. Coats, L.L., Cole, K.L., and Mead, J.I. 2008. 50,000 years of vegetation and climate history on the Colorado Plateau, Utah and Arizona, USA. Quat. Res. 70(2): 322-338. doi:10.1016/j.yqres.2008.04.006.
4. Cole, K.L. 1990. Reconstruction of past desert vegetation along the Colorado River using packrat middens. Palaeogeogr. Palaeoclimatol. Palaeoecol. 76(3-4): 349-366.doi:10.1016/0031-0182(90)90120-V.
5. Evanno, G., Regnaut, S., and Goudet, J. 2005. Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol. Ecol. 14(8): 2611-2620. doi:10.1111/j.1365-294X.2005.02553.x. PMID:15969739.
6. Falush, D., Stephens, M., and Pritchard, J.K. 2007. Inference of population structure using multilocus genotype data: dominant markers and null alleles. Mol. Ecol. Notes, 7(4): 574-578. doi:10.1111/j.1471-8286.2007.01758.x. PMID:18784791.
7. Felsenstein, J. 2004. PHYLIP (Phylogeny Inference Package). Distributed by the author. Department of Genome Sciences, University of Washington, Seattle.
8. Hewitt, G. 2000. The genetic legacy of the Quaternary ice ages. Nature, 405(6789): 907-913. doi:10.1038/35016000. PMID:10879524.
9. Hu, F.S., Hampe, A., and Petit, R.J. 2009. Paleoecology meets genetics: deciphering past vegetational dynamics. Front. Ecol. Environ, 7(7): 371-379. doi:10.1890/070160.
10. Hunter, K.L., and McAuliffe, J.R. 1994. Elevational shifts of Coleogyne ramossissima in the Mojave Desert during the Little Ice Age. Quat. Res. 42(2): 216-221. doi:10.1006/qres.1994.1071.
11. Jensen, J.L., Bohonak, A.J., and Kelley, S.T. 2005. Isolation by distance, web service. BMC Genetics 6: 13. v.3.16 [computer program]. Available from http://ibdws.sdsu.edu/ [accessed 25 June2011].
12. King, J.E., and Van Devender, T.R. 1977. Pollen analysis of fossil packrat middens from the Sonoran Desert. Quat. Res. 8(2): 191-204. doi:10.1016/0033-5894(77)90045-X.
13. Koehler, P.A., Anderson, R.S., and Spaulding, W.G. 2005. Development of vegetation in the Central Mojave Desert of California during the late Quaternary. Palaeogeogr. Palaeoclimatol. Palaeoecol. 215(3-4): 297-311. doi:10.1016/j.palaeo.2004.09.010.
14. Ledig, F.T., Rehfeldt, G.E., Saenz-Romero, C., and Flores-Lopez, C. 2010. Projections of suitable habitat for rare species under global warming scenarios. Am. J. Bot. 97(6): 970-987. doi:10.3732/ajb.0900329. PMID:21622467.
15. Lin, G., Phillips, S.L., and Ehleringer, J.R. 1996. Monosoonal precipitation responses of shrubs in a cold desert community on the Colorado Plateau. Oecologia (Berl.), 106: 8-17.
16. Lynch, M., and Milligan, B.G. 1994. Analysis of population genetic structure with RAPD markers. Mol. Ecol. 3(2): 91-99. doi:10.1111/j.1365-294X.1994.tb00109.x. PMID:8019690.
17. Meyer, S.E., and Pendleton, B.K. 2004. Factors affecting seed germination and seedling establishment of a long-lived desert shrub (Coleogyne ramosissima: Rosaceae). Plant Ecol. 178(2): 171-187. doi:10.1007/s11258-004-3038-x.
18. Nei, M. 1978. Estimation of average heterozygosities and genetic distance from small number of individuals. Genetics, 89(3): 583-590. PMID:17248844.
19. Pendleton, B.K., and Meyer, S.E. 2004. Habitat-correlated variation in blackbrush (Coleogyne ramosissima: Rosaceae) seed germination response. J. Arid Environ. 59(2): 229-243. doi:10.1016/j.jaridenv.2003.12.009.
20. Pendleton, B.K., and Pendleton, R.L. 1998. Pollination biology of Coleogyne ramosissima (Rosaceae). Southwest. Nat. 43(3): 376-380.
21. Petit, R., Brewer, S., Bordács, S., Burg, K., Cheddadi, R., Coart, E., Cottrell, J., Csaikl, U.M., van Dam, B., Deans, J.D., Espinel, S., Fineschi, S., Finkeldey, R., Glaz, I., Goicoechea, P.G., Jensen, J.S., König, A.O., Lowe, A.J., Madsen, S.F., Mátyás, G., Munro, R.C., Popescu, F., Slade, D., Tabbener, H., de Vries, S.G.M., Ziegenhagen, B., de Beaulieu, J.-L., and Kremer, A. 2002. Identification of refugia and post-glacial colonisation routes of European white oaks based on chloroplast DNA and fossil pollen evidence. For. Ecol. Manage. 156(1-3): 49-74. doi:10.1016/S0378-1127(01)00634-X.
22. Petit, R.J., Hu, F.S., and Dick, C.W. 2008. Forests of the past: a window to future changes. Science, 320(5882): 1450-1452.doi:10.1126/science.1155457. PMID:18556547.
23. Potter, D., Eriksson, T., Evans, R.C., Oh, S., Smedmark, J.E.E., Morgan, D.R., Kerr, M., Robertson, K.R., Arsenault, M., Dickinson, T.A., and Campbell, C.S. 2007. Phylogeny and classification of Rosaceae. Plant Syst. Evol. 266(1-2): 5-43.doi:10.1007/s00606-007-0539-9.
24. Pritchard, J.K., Stephens, M., and Donnelly, P. 2000. Inference of population structure using multilocus genotype data. Genetics, 155(2): 945-959. PMID:10835412.
25. Rehfeldt, G.E., Crookston, N.L., Warwell, M.V., and Evans, J.S. 2006. Empirical analyses of plant-climate relationships for the western United States. Int. J. Plant Sci. 167(6): 1123-1150. doi:10.1086/507711.
26. Richardson, B.A., Brunsfeld, S.J., and Klopfenstein, N.B. 2002. DNA from bird-dispersed seed and wind-disseminated pollen provides insights into postglacial colonization and population genetic structure of whitebark pine (Pinus albicaulis). Mol. Ecol. 11(2): 215-227. doi:10.1046/j.1365-294X.2002.01435.x. PMID:11856423.
27. Schlüter, P.M., and Harris, S.A. 2006. Analysis of multilocus fingerprinting data sets containing missing data. Mol. Ecol. Notes, 6(2): 569-572. doi:10.1111/j.1471-8286.2006.01225.x.
28. Schuster, W.S.F., Sandquist, D.R., Phillips, S.L., and Ehleringer, J.R. 1994. High levels of genetic variation in populations of four dominant aridland plant species in Arizona. J. Arid Environ. 27(2): 159-167. doi:10.1006/jare.1994.1055.
29. Spaulding, W.G. 1983. Late Wisconsin macrofossil records of desert vegetation in the American Southwest. Quat. Res. 19(2): 256-264.doi:10.1016/0033-5894(83)90009-1.
30. Stebbins, G.L., and Major, J. 1965. Endemism and speciation in the California flora. Ecol. Monogr. 35(1): 1-35. doi:10.2307/1942216.
31. Summers, H.A., Smith, B.N., and Hansen, L.D. 2009. Comparison of respiratory and growth characteristics of two co-occuring shrubs from a cold desert, Coleogyne ramosissima (blackbrush) and Atriplex confertifolia (shadscale). J. Arid Environ. 73(1): 1-6.doi:10.1016/j.jaridenv.2008.09.010.
32. Vekemans, X. 2002. AFLP-SURV version 1.0. Distributed by the author. Laboratoire de Génétique et Ecologie Végétale, Université Libre de Bruxelles, Belgium.
33. Vos, P., Hogers, R., Bleeker, M., Reijans, M., van de Lee, T., Hornes, M., Frijters, A., Pot, J., Peleman, J., Kuiper, M., and Zabeau, M. 1995. AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res. 23(21): 4407-4414. doi:10.1093/nar/23.21.4407.PMID:7501463.
34. West, N.E. 1983. Colorado Plateau-Mohavian blackbrush semidesert. In Temperate deserts and semi-deserts. Edited by N.E. West. Elsevier, Amsterdam, the Netherlands. pp. 399-411.
35. Zhivotovsky, L.A. 1999. Estimating population structure in diploids with multilocus dominant DNA markers. Mol. Ecol. 8(6): 907-913. doi:10.1046/j.1365-294x.1999.00620.x. PMID:10434412.