Traveling time of a translating ribosome along messenger RNA monitored directly on a quartz crystal microbalance

Journal of the American Chemical Society

Volumn 134, Issue 15, 2012, Pages 6793-6800

  Takahashi, Shuntaro ^a   Tsuji, Kentaro ^a   Ueda, Takuya ^b   Okahata, Yoshio ^a  

^a TOKYO INSTITUTE OF TECHNOLOGY   (Japan)

^b UNIVERSITY OF TOKYO   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

CELL-FREE TRANSLATION SYSTEMS; CODING REGION; CODING SEQUENCES; CODON USAGE; FUSION PROTEINS; MASS CHANGE; MASS INCREASE; MESSENGER RNA; MESSENGER RNAS (MRNA); PROTEIN-CODING; QUARTZ CRYSTAL MICROBALANCE TECHNIQUES; REAL TIME; TIME LAG; TRANSLATION RATES; TRAVELING TIME; UNIQUE SEQUENCE;

BIOCHEMISTRY; ESCHERICHIA COLI; GENE EXPRESSION; MACROMOLECULES; POLYPEPTIDES; QUARTZ CRYSTAL MICROBALANCES; RNA;

PROTEINS;

BINDING PROTEIN; HYBRID PROTEIN; MESSENGER RNA; RIBOSOME PROTEIN; STREPTAVIDIN;

AMINO ACID SEQUENCE; ARTICLE; CELL FREE SYSTEM; CODON; CRYSTAL STRUCTURE; ESCHERICHIA COLI; GENE EXPRESSION; NONHUMAN; PROTEIN TRANSPORT; QUARTZ CRYSTAL MICROBALANCE; RNA TRANSLATION;

GENE EXPRESSION REGULATION; KINETICS; PROTEIN BIOSYNTHESIS; QUARTZ CRYSTAL MICROBALANCE TECHNIQUES; RIBOSOMES; RNA, MESSENGER; TIME FACTORS;

EID: 84860010928     PISSN: 00027863     EISSN: 15205126     Source Type: Journal    
DOI: 10.1021/ja300993d     Document Type: Article

References (37)

1. Wintermeyer, W.; Peske, F.; Beringer, M.; Gromadski, K. B.; Savelsbergh, A.; Rodnina, M. V. Biochem. Soc. Trans. 2004, 32, 733
2. Steitz, T. A. Nat. Rev. Mol. Cell Biol. 2008, 9, 242
3. Schmeing, T. M.; Ramakrishnan, V. Nature 2009, 461, 1234
4. Ingolia, N. T.; Ghaemmaghami, S.; Newman, J. R. S.; Weissman, J. S. Science 2009, 324, 218
5. Kimchi-Sarfaty, C.; Oh, J. M.; Kim, I. W.; Sauna, Z. E.; Calcagno, A. M.; Ambudkar, S. V.; Gottesman, M. M. Science 2007, 315, 525
6. Komar, A. A.; Lesnik, T.; Reiss, C. FEBS Lett. 1999, 462, 387
7. Komar, A. A. Trends Biochem. Sci. 2009, 34, 16
8. Nakatogawa, H.; Ito, K. Mol. Cell 2001, 7, 185
9. Nakatogawa, H.; Ito, K. Cell 2002, 108, 629
10. Seidelt, B.; Innis, C. A.; Wilson, D. N.; Gartmann, M.; Armache, J. P.; Villa, E.; Trabuco, L. G.; Becker, T.; Mielke, T.; Schulten, K.; Steitz, T. A.; Beckmann, R. Science 2009, 326, 1412
11. Doma, M. K.; Parker, R. Nature 2006, 440, 561
12. Bonderoff, J. M.; Lloyd, R. E. Nucleic Acids Res. 2010, 38, 7054
13. Vassilenko, K. S.; Alekhina, O. M.; Dmitriev, S. E.; Shatsky, I. N.; Spirin, A. S. Nucleic Acids Res. 2011, 39, 5555
14. Uemura, S.; Iizuka, R.; Ueno, T.; Shimizu, Y.; Taguchi, H.; Ueda, T.; Puglisi, J. D.; Funatsu, T. Nucleic Acids Res. 2008, 36
15. Wen, J. D.; Lancaster, L.; Hodges, C.; Zeri, A. C.; Yoshimura, S. H.; Noller, H. F.; Bustamante, C.; Tinoco, I. Nature 2008, 452, 598
16. Takahashi, S.; Iida, M.; Furusawa, H.; Shimizu, Y.; Ueda, T.; Okahata, Y. J. Am. Chem. Soc. 2009, 131, 9326
17. Shimizu, Y.; Inoue, A.; Tomari, Y.; Suzuki, T.; Yokogawa, T.; Nishikawa, K.; Ueda, T. Nat. Biotechnol. 2001, 19, 751
18. Shimizu, Y.; Kanamori, T.; Ueda, T. Methods 2005, 36, 299
19. Takahashi, S.; Matsuno, H.; Furusawa, H.; Okahata, Y. J. Biol. Chem. 2008, 283, 15023
20. Takahashi, S.; Akita, R.; Matsuno, H.; Furusawa, H.; Shimizu, Y.; Ueda, T.; Okahata, Y. ChemBioChem 2008, 9, 870
21. Ohashi, H.; Shimizu, Y.; Ying, B. W.; Ueda, T. Biochem. Biophys. Res. Commun. 2007, 352, 270
22. Shimizu, Y.; Ueda, T. FEBS Lett. 2002, 514, 74
23. Meinnel, T.; Blanquet, S. J. Biol. Chem. 1995, 270, 15908
24. Zuker, M. Nucleic Acids Res. 2003, 31, 3406
25. Laursen, B. S.; Sorensen, H. P.; Mortensen, K. K.; Sperling-Petersen, H. U. Microbiol. Mol. Biol. Rev. 2005, 69, 101
26. Nissen, P.; Hansen, J.; Ban, N.; Moore, P. B.; Steitz, T. A. Science 2000, 289, 920
27. Harms, J.; Schluenzen, F.; Zarivach, R.; Bashan, A.; Gat, S.; Agmon, I.; Bartels, H.; Franceschi, F.; Yonath, A. Cell 2001, 107, 679
28. Wilson, D. N.; Nierhaus, K. H. Angew. Chem., Int. Ed. 2003, 42, 3464
29. Nakamura, Y.; Gojobori, T.; Ikemura, T. Nucleic Acids Res. 2000, 28, 292
30. Novy, R.; Drott, D.; Yaeger, K.; Mierendorf, R. Innovations 2001, 12, 1
31. Shine, J.; Dalgarno, L. Proc. Natl. Acad. Sci. U.S.A. 1974, 71, 1342
32. Zavialov, A. V.; Hauryliuk, V. V.; Ehrenberg, M. Mol. Cell 2005, 18, 675
33. Weiss, R. B.; Dunn, D. M.; Dahlberg, A. E.; Atkins, J. F.; Gesteland, R. F. EMBO J. 1988, 7, 1503
34. Márquez, V.; Wilson, D. N.; Tate, W. P.; Triana-Alonso, F.; Nierhaus, K. H. Cell 2004, 118, 45
35. Chen, H.; Bjerknes, M.; Kumar, R.; Jay, E. Nucleic Acids Res. 1994, 22, 4953
36. Qu, X.; Wen, J. D.; Lancaster, L.; Noller, H. F.; Bustamante, C.; Tinoco, I. Nature 2011, 475, 118
37. Watts, J. M.; Dang, K. K.; Gorelick, R. J.; Leonard, C. W.; Bess, J. W., Jr.; Swanstrom, R.; Burch, C. L.; Weeks, K. M. Nature 2009, 460, 711