메뉴 건너뛰기




Volumn 12, Issue 4, 2012, Pages 789-797

TB-Lineage: An online tool for classification and analysis of strains of Mycobacterium tuberculosis complex

Author keywords

Classification; Lineage; MIRU VNTR; Spoligoforest; Spoligotype; Tuberculosis

Indexed keywords

ACCURACY; ARTICLE; BACTERIAL STRAIN; BACTERIAL TRANSMISSION; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; BAYES THEOREM; CONTROLLED STUDY; DATA ANALYSIS SOFTWARE; GENE DELETION; GENE LOCUS; GENETIC SIMILARITY; GENETIC VARIABILITY; GENOTYPE; MOLECULAR EPIDEMIOLOGY; MYCOBACTERIUM TUBERCULOSIS; NONHUMAN; ONLINE ANALYSIS; PREDICTION; PRIORITY JOURNAL; PROCESS DEVELOPMENT; VALIDATION PROCESS; VARIABLE NUMBER OF TANDEM REPEAT;

EID: 84859912486     PISSN: 15671348     EISSN: 15677257     Source Type: Journal    
DOI: 10.1016/j.meegid.2012.02.010     Document Type: Article
Times cited : (81)

References (33)
  • 1
    • 42449089412 scopus 로고    scopus 로고
    • Three-year population-based evaluation of standardized mycobacterial interspersed repetitive-unit-variable-number tandem-repeat typing of Mycobacterium tuberculosis
    • Allix-Beguec C., Fauville-Dufaux M., Supply P. Three-year population-based evaluation of standardized mycobacterial interspersed repetitive-unit-variable-number tandem-repeat typing of Mycobacterium tuberculosis. J. Clin. Microbiol. 2008, 46:1398-1406.
    • (2008) J. Clin. Microbiol. , vol.46 , pp. 1398-1406
    • Allix-Beguec, C.1    Fauville-Dufaux, M.2    Supply, P.3
  • 2
    • 46749114975 scopus 로고    scopus 로고
    • Evaluation and strategy for use of MIRU-VNTRplus, a multifunctional database for online analysis of genotyping data and phylogenetic identification of Mycobacterium tuberculosis complex isolates
    • Allix-Beguec C., Harmsen D., Weniger T., Supply P., Niemann S. Evaluation and strategy for use of MIRU-VNTRplus, a multifunctional database for online analysis of genotyping data and phylogenetic identification of Mycobacterium tuberculosis complex isolates. J. Clin. Microbiol. 2008, 46:2692-2699.
    • (2008) J. Clin. Microbiol. , vol.46 , pp. 2692-2699
    • Allix-Beguec, C.1    Harmsen, D.2    Weniger, T.3    Supply, P.4    Niemann, S.5
  • 3
    • 77952256377 scopus 로고    scopus 로고
    • A conformal Bayesian network for classification of Mycobacterium tuberculosis complex lineages
    • Aminian M., Shabbeer A., Bennett K. A conformal Bayesian network for classification of Mycobacterium tuberculosis complex lineages. BMC Bioinformatics 2010, 11:S4.
    • (2010) BMC Bioinformatics , vol.11
    • Aminian, M.1    Shabbeer, A.2    Bennett, K.3
  • 4
    • 79957859266 scopus 로고    scopus 로고
    • Using affinity propagation for identifying subspecies among clonal organisms: lessons from M. tuberculosis
    • Borile C., Labarre M., Franz S., Sola C., Refregier G. Using affinity propagation for identifying subspecies among clonal organisms: lessons from M. tuberculosis. BMC Bioinformatics 2011, 12:224.
    • (2011) BMC Bioinformatics , vol.12 , pp. 224
    • Borile, C.1    Labarre, M.2    Franz, S.3    Sola, C.4    Refregier, G.5
  • 7
    • 70649084195 scopus 로고    scopus 로고
    • Genotyping of genetically monomorphic bacteria: DNA sequencing in Mycobacterium tuberculosis highlights the limitations of current methodologies
    • Comas I., Homolka S., Niemann S., Gagneux S. Genotyping of genetically monomorphic bacteria: DNA sequencing in Mycobacterium tuberculosis highlights the limitations of current methodologies. PLoS ONE 2009, 4:e7815.
    • (2009) PLoS ONE , vol.4
    • Comas, I.1    Homolka, S.2    Niemann, S.3    Gagneux, S.4
  • 8
    • 78049317944 scopus 로고    scopus 로고
    • Does M. tuberculosis genomic diversity explain disease diversity?
    • Coscolla M., Gagneux S. Does M. tuberculosis genomic diversity explain disease diversity?. Drug Discov. Today: Dis. Mech. 2010, 7:e47-e59.
    • (2010) Drug Discov. Today: Dis. Mech. , vol.7
    • Coscolla, M.1    Gagneux, S.2
  • 9
    • 78149243438 scopus 로고    scopus 로고
    • Mycobacterium africanum-review of an important cause of human tuberculosis in West Africa
    • de Jong B.C., Antonio M., Gagneux S. Mycobacterium africanum-review of an important cause of human tuberculosis in West Africa. PLoS Neglected Trop. Dis. 2010, 4:e744.
    • (2010) PLoS Neglected Trop. Dis. , vol.4
    • de Jong, B.C.1    Antonio, M.2    Gagneux, S.3
  • 10
    • 4544246531 scopus 로고    scopus 로고
    • Data mining of Mycobacterium tuberculosis complex genotyping results using mycobacterial interspersed repetitive units validates the clonal structure of spoligotyping-defined families
    • Ferdinand S., Valetudie G., Sola C., Rastogi N. Data mining of Mycobacterium tuberculosis complex genotyping results using mycobacterial interspersed repetitive units validates the clonal structure of spoligotyping-defined families. Res. Microbiol. 2004, 155:647-654.
    • (2004) Res. Microbiol. , vol.155 , pp. 647-654
    • Ferdinand, S.1    Valetudie, G.2    Sola, C.3    Rastogi, N.4
  • 15
    • 34247152126 scopus 로고    scopus 로고
    • Global phylogeography of Mycobacterium tuberculosis and implications for tuberculosis product development
    • Gagneux S., Small P. Global phylogeography of Mycobacterium tuberculosis and implications for tuberculosis product development. Lancet Infect. Dis. 2007, 7:328-337.
    • (2007) Lancet Infect. Dis. , vol.7 , pp. 328-337
    • Gagneux, S.1    Small, P.2
  • 16
    • 0034274870 scopus 로고    scopus 로고
    • An open graph visualization system and its applications to software engineering
    • Gansner E.R., North S.C. An open graph visualization system and its applications to software engineering. Softw. Pract. Exper. 2000, 30:1203-1233.
    • (2000) Softw. Pract. Exper. , vol.30 , pp. 1203-1233
    • Gansner, E.R.1    North, S.C.2
  • 17
    • 29744433066 scopus 로고    scopus 로고
    • Single-nucleotide polymorphism-based population genetic analysis of Mycobacterium tuberculosis strains from 4 geographic sites
    • Gutacker M.M., Mathema B., Soini H., Shashkina E., Kreiswirth B.N., Graviss E.A., Musser J.M. Single-nucleotide polymorphism-based population genetic analysis of Mycobacterium tuberculosis strains from 4 geographic sites. J. Infect. Dis. 2006, 193:121-128.
    • (2006) J. Infect. Dis. , vol.193 , pp. 121-128
    • Gutacker, M.M.1    Mathema, B.2    Soini, H.3    Shashkina, E.4    Kreiswirth, B.N.5    Graviss, E.A.6    Musser, J.M.7
  • 20
    • 78650109126 scopus 로고    scopus 로고
    • Strain classification of Mycobacterium tuberculosis: congruence between large sequence polymorphisms and spoligotypes
    • (Short communication)
    • Kato-Maeda M., Gagneux S., Flores L., Kim E., Small P., Desmond E., Hopewell P. Strain classification of Mycobacterium tuberculosis: congruence between large sequence polymorphisms and spoligotypes. Int. J. Tuberc. Lung Dis. 2011, 15:131-133. (Short communication).
    • (2011) Int. J. Tuberc. Lung Dis. , vol.15 , pp. 131-133
    • Kato-Maeda, M.1    Gagneux, S.2    Flores, L.3    Kim, E.4    Small, P.5    Desmond, E.6    Hopewell, P.7
  • 23
    • 84859884558 scopus 로고    scopus 로고
    • Impact of homoplasy on variable numbers of tandem repeats and spoligotypes in Mycobacterium tuberculosis
    • Reyes J., Chan C., Tanaka M. Impact of homoplasy on variable numbers of tandem repeats and spoligotypes in Mycobacterium tuberculosis. Infect. Genet. Evol. 2011, 10.1016/j.meegid.2011.05.018.
    • (2011) Infect. Genet. Evol.
    • Reyes, J.1    Chan, C.2    Tanaka, M.3
  • 24
    • 58149483907 scopus 로고    scopus 로고
    • Models of deletion for visualizing bacterial variation: an application to tuberculosis spoligotypes
    • Reyes J.F., Francis A.R., Tanaka M.M. Models of deletion for visualizing bacterial variation: an application to tuberculosis spoligotypes. BMC Bioinformatics 2008, 9:496.
    • (2008) BMC Bioinformatics , vol.9 , pp. 496
    • Reyes, J.F.1    Francis, A.R.2    Tanaka, M.M.3
  • 25
    • 0036184742 scopus 로고    scopus 로고
    • A data-mining approach to spacer oligonucleotide typing of Mycobacterium tuberculosis
    • Sebban M., Mokrousov I., Rastogi N., Sola C. A data-mining approach to spacer oligonucleotide typing of Mycobacterium tuberculosis. Bioinformatics 2002, 18:235-243.
    • (2002) Bioinformatics , vol.18 , pp. 235-243
    • Sebban, M.1    Mokrousov, I.2    Rastogi, N.3    Sola, C.4
  • 27
    • 0035345996 scopus 로고    scopus 로고
    • Spoligotype database of Mycobacterium tuberculosis: biogeographic distribution of shared types and epidemiologic and phylogenetic perspectives
    • Sola C., Filliol I., Gutierrez M.C., Mokrousov I., Vincent V., Rastogi N. Spoligotype database of Mycobacterium tuberculosis: biogeographic distribution of shared types and epidemiologic and phylogenetic perspectives. Emerg. Infect. Dis. 2001, 7:390-396.
    • (2001) Emerg. Infect. Dis. , vol.7 , pp. 390-396
    • Sola, C.1    Filliol, I.2    Gutierrez, M.C.3    Mokrousov, I.4    Vincent, V.5    Rastogi, N.6
  • 28
  • 31
    • 0034018329 scopus 로고    scopus 로고
    • Variable human minisatellite-like regions in the Mycobacterium tuberculosis genome
    • Supply P., Mazars E., Lesjean S., Vincent V., Gicquel B., Locht C. Variable human minisatellite-like regions in the Mycobacterium tuberculosis genome. Mol. Microbiol. 2000, 36:762-771.
    • (2000) Mol. Microbiol. , vol.36 , pp. 762-771
    • Supply, P.1    Mazars, E.2    Lesjean, S.3    Vincent, V.4    Gicquel, B.5    Locht, C.6
  • 32


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.