A data-mining approach to spacer oligonucleotide typing of Mycobacterium tuberculosis

Bioinformatics

Volumn 18, Issue 2, 2002, Pages 235-243

  Sebban, M ^a   Mokrousov, I ^b   Rastogi, N ^b   Sola, C ^b  

^a French West Indies and Guiana University   (Guadeloupe)

^b Unite de la Tuberculose et des Mycobacteries   (Guadeloupe)

Author keywords

[No Author keywords available]

Indexed keywords

OLIGONUCLEOTIDE; SPACER DNA;

ARTICLE; CLADISTICS; CONTROLLED STUDY; CORRELATION ANALYSIS; DATA ANALYSIS; DECISION THEORY; DNA FINGERPRINTING; GENE LOCUS; GENE STRUCTURE; GENETIC ALGORITHM; GENETIC MODEL; GENETIC PROCEDURES; MOLECULAR EVOLUTION; MYCOBACTERIUM TUBERCULOSIS; NONHUMAN; PRIORITY JOURNAL;

ACTINOBACTERIA (CLASS); MYCOBACTERIUM; MYCOBACTERIUM TUBERCULOSIS; UNCULTURED ACTINOMYCETE;

EID: 0036184742     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/18.2.235     Document Type: Article

References (31)

1. Instance-based learning algorithms
2. Characterization of Mycobacterium tuberculosis complex direct repeat sequences for use in cycling probe reactions
3. Identification of a contaminating Mycobacterium tuberculosis strain with a transposition of an IS6110 insertion element resulting in an altered spoligotype
4. Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence
5. Molecular epidemiology of tuberculosis: Coming of age
6. Genetic variation and evolutionary origin of the direct repeat locus of Mycobacterium tuberculosis complex bacteria
7. IS6110-mediated deletions of wild-type chromosomes of Mycobacterium tuberculosis
8. Detection of a previously unamplified spacer within the DR locus of Mycobacterium tuberculosis: Epidemiological implications
9. Genetic diversity in the Mycobacterium tuberculosis complex based on variable numbers of tandem DNA repeats
10. The reduced nearest neighbor rule
11. Rumors of disease in the global village: Outbreak verification
12. Nature of DNA polymorphism in the direct repeat cluster of Mycobacterium tuberculosis
13. The condensed nearest neighbor rule
14. Insertion element IS987 from Mycobacterium bovis BCG is located in a hot-spot integration region for insertion elements in Mycobacterium tuberculosis complex strains
15. Evolution and clonal traits of Mycobacterium tuberculosis in Guinea-Bissau
16. Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology
17. Comparison of methods based on different molecular epidemiologial markers for typing of Mycobacterium tuberculosis strains: Interlaboratory study of discriminatory power and reproducibility
18. Use of spoligotyping to study the evolution of the direct repeat locus by IS6110 transposition in Mycobacterium tuberculosis
19. Long stretches of short tandem repeats are present in the largest replicons of the Archaea Haloferax mediterranei and Haloferax volcanii and could be involved in replicon partitioning
20. Instance pruning as an information preserving problem
21. Characterization of Mycobacterium tuberculosis isolates from patients in Houston, Texas, by spoligotyping
22. An update of the spoligotyping database of Mycobacterium tuberculosis: Epidemiological and phylogenetical perspectives
23. Mycobacterium tuberculosis phylogeny reconstruction based on combined numerical analysis with IS1081, IS6110, VNTR and DR-based spoligotyping suggests the existence of two new phylogeographical clades
24. Predominance of a single genotype of Mycobacterium tuberculosis in countries of East Asia
25. Variable human minisatellite-like regions in the Mycobacterium tuberculosis genome
26. Genetic diversity of Mycobacterium africanum clinical isolates based on IS6110-restriction fragment length polymorphism analysis, spoligotyping, and variable number of tandem DNA
27. Reduction techniques for instances-based learning algorithms