Genetic diversity of mountain plants: Two migration episodes of Mediterranean Erodium (Geraniaceae)

Molecular Phylogenetics and Evolution

Volumn 63, Issue 3, 2012, Pages 866-876

  Alarcón, Marisa ^a   Vargas, Pablo ^b   Sáez, Llorenç ^c   Molero, Julià ^d   Aldasoro, Juan José ^a,b  

^a INSTITUT BOTÀNIC DE BARCELONA IBB CSIC ICUB   (Spain)

^b CSIC   (Spain)

^c UNIVERSITAT AUTÒNOMA DE BARCELONA   (Spain)

^d UNIVERSITY OF BARCELONA   (Spain)

Author keywords

Gene flow; Interglacial migrations; Isolation by distance; Phylogeography; Private fragments; Reproductive isolation

Indexed keywords

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; ARTICLE; BAYES THEOREM; BIOLOGICAL MODEL; DNA SEQUENCE; GENETIC POLYMORPHISM; GENETIC VARIABILITY; GENETICS; GERANIACEAE; MONTE CARLO METHOD; MULTILOCUS SEQUENCE TYPING; MULTIVARIATE ANALYSIS; PHYLOGEOGRAPHY; PLANT GENE; PROBABILITY; SEQUENCE ALIGNMENT; SOUTHERN EUROPE; SPECIES DIFFERENTIATION; STATISTICAL MODEL;

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM ANALYSIS; BAYES THEOREM; GENES, PLANT; GENETIC SPECIATION; GENETIC VARIATION; GERANIACEAE; LIKELIHOOD FUNCTIONS; MARKOV CHAINS; MEDITERRANEAN REGION; MODELS, GENETIC; MONTE CARLO METHOD; MULTILOCUS SEQUENCE TYPING; MULTIVARIATE ANALYSIS; PHYLOGEOGRAPHY; POLYMORPHISM, GENETIC; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA;

ERODIUM; GERANIACEAE;

EID: 84859832787     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2012.02.031     Document Type: Article

References (74)

1. Alarcón, M., 2008. Biología reproductiva y evolución del género Erodium L'Hér. ex Aiton. Consecuencias y comparación con otras Geraniaceae. Ph. Doctoral Thesis. University Rey Juan Carlos, Madrid, Spain.
2. Alarcón M., Roquet C., Aldasoro J.J. Evolution of Pollen/Ovule ratios and breeding-system in Erodium (Geraniaceae). Systematic Botany 2011, 36:661-676.
3. Balao F.L., Valente M., Vargas P., Herrera J., Talavera S. Radiative evolution of polyploid races of the Iberian carnation Dianthus broteri (Caryophyllaceae). New Phytologist 2010, 187:542-551. doi: 10.1111/j.1469-8137.2010.03280.x.
4. Comes H.P., Kadereit J.W. The effect of Quaternary climatic changes on plant distribution and evolution. Trends in Plant Science 1998, 3:432-438.
5. De Beaulieu J.-L., Andrieu V., Lowe J.J., Ponel P., Reille M. The Weichselian late-glacial in southwestern Europe (Iberian Peninsula, Pyrenees, Massif Central, northern Apennines). Journal of Quaternary Science 1994, 9:101-107.
6. Desprès L., Loriot S., Gaudeul M. Geographic pattern of genetic variation in the European globeflower Trollius europaeus L. (Ranunculaceae) inferred from amplified fragment length polymorphism markers. Molecular Ecology 2002, 11:2337-2347.
7. Dubreuil M., Riba M., Mayol M. Genetic structure and diversity in Ramonda myconi (Gesneriaceae): effects of historical climate change on a preglacial relict species. American Journal of Botany 2008, 95:577-587.
8. Evanno G., Regnaut S., Goudet J. Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Molecular Ecology 2005, 14:2611-2620.
9. Excoffier L., Laval G., Schneider S. Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online 2005, 1:47-50.
10. Falush D., Stephens M., Pritchard J.K. Inference of population structure using multilocus genotype data: dominant markers and null alleles. Molecular Ecology Notes 2007, 7:574-578.
11. Fiz O., Vargas P., Alarcón M.L., Aldasoro J.J. Phylogenetic relationships and evolution in Erodium (Geraniaceae) based on trnL-trnF sequences. Systematic Botany 2006, 31:739-763.
12. Fiz O., Vargas P., Alarcón M., Aedo C., García J.L., Aldasoro J.J. Phylogeny and historical biogeography of Geraniaceae in relation to climate changes and pollination ecology. Systematic Botany 2008, 33:326-342.
13. Fiz-Palacios O., Vargas P., Vila R., Papadopoulos A.S.T., Aldasoro J.J. The uneven phylogeny and biogeography ofErodium (Geraniaceae): radiations in the Mediterranean and recent recurrent intercontinental colonization. Annals of Botany 2010, 106:871-884. 10.1093/aob/mcq184.
14. Frankham R., Ralls K. Inbreeding leads to extinction. Nature 1998, 392:441-442.
15. Gaudeul M. Disjunct distribution of Hypericum nummularium L. (Hypericaceae): molecular data suggest bidirectional colonization from a single refugium rather than survival in distinct refugia. Biological Journal of the Linnean Society 2006, 87:437-447.
16. Gaudeul M., Taberlet P., Till-Bottraud I. Genetic diversity in an endangered alpine plant, Eryngium alpinum L. (Apiaceae), inferred from amplified fragment length polymorphism markers. Molecular Ecology 2000, 9:1625-1637.
17. Gilpin M.E., Soulé M.E. Minimum viable populations: processes of species extinction. Conservation Biology: The Science of Scarcity and Diversity 1986, 19-34. Sinauer and Associates, Sunderland. M.E. Soulé (Ed.).
18. Gómez A., Lunt D.H. Refugia within refugia: patterns of phylogeographic concordance in the Iberian Peninsula. Phylogeography of Southern European Refugia 2007, 155-188. Springer, Dordrecht, The Netherlands. S. Weiss, N. Ferrand (Eds.).
19. Guittonneau G.G. Contribution à l'étude biosystématique du genre Erodium L'Hér. dans le bassin méditérranéen occidental. Boissiera 1972, 20:1-154.
20. Guittonneau G.G. Taxonomy, Ecology and Phylogeny of genus Erodium ĹHer in the Mediterranean region. Proceedings of the International Geraniaceae Symposium 1990, 71-91. University of Stellenbosch, South Africa. P. Vorster (Ed.).
21. Hall, T.A. 1999. BioEdit: A User-friendly Biological Sequence Alignment Editor and Analysis Program for Windows 95/98/NT. Nucleic Acids Symposium Series No. 41, pp. 95-98.
22. Hewitt G.M. Post-glacial re-colonization of European biota. Biological Journal of the Linnean Society 1999, 68:87-112.
23. Hewitt G.H. The genetic legacy of quaternary ice ages. Nature 2000, 405:907-913.
24. Huck S., Büdel B., Kadereit J.W., Printzen C. Rangewide phylogeography of the European temperate-montane herbaceous plant Meum athamanticum Jacq.: evidence for periglacial persistence. Journal of Biogeography 2009, 36:1588-1599.
25. Huson D.H., Bryant D. Application of phylogenetic networks in evolutionary studies. Molecular Ecology and Evolution 2006, 23:254-267. .
26. Kadereit J.W., Griebeler E.M., Comes H.P. Quaternary diversification in European alpine plants: pattern and process. Philosophical Translations of the Royal Society of London Series B 2004, 359:265-274. doi: 10.1098/rstb.2003.1389.
27. Kropf M., Comes H.P., Kadereit J.W. Long-distance vs vicariance. The origin and genetic diversity of alpine plants in the Spanish Sierra Nevada. New Phytologist 2006, 172:169-184.
28. Kropf M., Comes H.P., Kadereit J.W. Causes of the genetic architecture of southwest European high mountain disjuncts. Plant Ecology and Diversity 2008, 1:217-228.
29. Kropf M., Comes H.P., Kadereit J.W. An AFLP clock for the absolute dating of shallow-time evolutionary history based on the intraspecific divergence of southwestern European alpine plant species. Molecular Ecology 2009, 18:697-708.
30. Kuss P., Pluess A.R., Aegisdóttir H.H., Stöcklin J. Spatial isolation and genetic differentiation in naturally fragmented plant populations of the Swiss Alps. Journal of Plant Ecology 2008, 3:149-159. 10.1093/jpe/rtn009.
31. Lang G. Quartäre Vegetationsgeschichte Europas 1994, Gustav Fischer Verlag, Jena, Germany.
32. López-Pujol J., Alvarez N., Bosch M., Simon J., Blanché C. Allozyme variation and taxonomical implications of the endemic rocky plant Erodium rupestre (Geraniaceae). Biochemical Systematics and Ecology 2006, 34:219-230.
33. Lynch M., Milligan B.G. Analysis of population genetic structure with RAPD markers. Molecular Ecology 1994, 3:91-99.
34. Manni, F., Guérard, E., 2004. BARRIER, Version 2.2. Manual of the User. Population Genetics Team, Museum of Mankind (Musée de l' Homme), Paris, France.
35. Mantel N. The detection of disease clustering and a generalized regression approach. Cancer Research 1967, 27:209-220.
36. Martín-Bravo S., Valcárcel V., Vargas P., Luceño M. Geographical speciation related to Pleistocene range shifts in the western Mediterranean mountains (Reseda sect. Glaucoreseda, Resedaceae). Taxon 2010, 59:466-482.
37. Martínez-Ortega M.M., Delgado L., Albach D.C., Elena-Rosselló J.A., Rico E. Species Boundaries and Phylogeographic Patterns in Cryptic Taxa Inferred from AFLP Markers: Veronica subgen. Pentasepalae (Scrophulariaceae) in the Western Mediterranean. Systematic Botany 2004, 29:965-986.
38. Michl T., Huck S., Schmitt T., Liebrich A., Haase P., Büdel B. The molecular population structure of the tallforb Cicerbita alpina (L.) Wallr. (Asteraceae) supports the idea of cryptic glacial refugia in Central Europe. Botanical Journal of the Linnean Society 2010, 164:142-154.
39. Mráz P., Gaudel M., Rioux D., Gielly L., Choler P., Taberlet P., the IntraBioDiv Consortium Genetic structure of Hypochaeris uniflora (Asteraceae) suggests vicariance in the Carpathians and rapid post-glacial colonization of the Alps from an eastern Alpine refugium. Journal of Biogeography 2007, 34:2100-2114.
40. Nei M., Li W.H. Mathematical model for studying genetic variation in term of restriction endonucleases. Proceedings of the National Academy of Sciences USA 1979, 76:5269-5273.
41. Nieto-Feliner G. Southern European glacial refugia: a tale of tales. Taxon 2011, 60:365-372.
42. Nylander J.A.A. MrModeltest v2. Program distributed by the author 2004, Uppsala University, Uppsala, .
43. Nylander J.A., Wilgenbusch J.C., Warren D.L., Swofford D.L. AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics. Bioinformatics 2008, 24:581-583.
44. Pauli, H., Gottfried, M., Dullinger, S., Grabherr, G., 2003. Assessing the long-term dynamics of endemic plants at summit habitats. In: Nagy, L., Grabherr, G., Körner, C., Thompson, D.B.A. (Eds.), Alpine biodiversity in Europe. Ecological studies, vol. 167. Springer Verlag, Heidelberg, Germany, pp. 195-207.
45. Peredo E.L., Revilla M.A., Jiménez-Alfaro B., Bueno A., Fernández Prieto J.A., Abbott R.J. Historical biogeography of a disjunctly distributed, Spanish alpine plant, Senecio boissieri (Asteraceae). Taxon 2009, 58:883-892.
46. Pluess A., Stöckin J. Population genetic diversity of the clonal plant Geum reptans (Rosaceae) in the Swiss Alps. American Journal of Botany 2004, 91:2013-2021.
47. Pritchard J.K., Stephens M., Donnelly P. Inference of population structure using multilocus genotype data. Genetics 2000, 155:945-959.
48. Reisch C., Poschold P., Wingender R. Genetic variation of Saxifraga paniculata Mill. (Saxifragaceae): molecular evidence for glacial relict endemism in central Europe. Biological Journal of the Linnean Society 2003, 80:11-21.
49. Rodríguez-Sánchez F., Hampe A., Jordano P., Arroyo J. Past tree range dynamics in the Iberian Peninsula inferred through phylogeography and palaeodistribution modelling: a review. Review of Palaeobotany and Palynology 2010, 162:507-521.
50. Rohlf, F.J., 1998. NTSYS-pc, Numerical Taxonomy and Multivariate Analysis System, v. 1.80. Exeter Software, New York.
51. Ronikier M., Ciešlak E., Korbecka G. High genetic differentiation in the alpine plant Campanula alpina Jacq. (Campanulaceae): evidence for glacial survival in several Carpathian regions and long-term isolation between the Carpathians and the Alps. Molecular Ecology 2008, 17:1763-1775.
52. Ronquist F., Huelsenbeck J.P. MRBAYES 3: Bayesian phylogenetic inference 25 under mixed models. Bioinformatics 2003, 19:1572-1574.
53. Schönswetter P., Tribsch A., Barfuss M., Niklfeld H. Several Pleistocene refugia detected in the high alpine plant Phyteuma globulariifolium Sternb. & Hoppe (Campanulaceae) in the European Alps. Molecular Ecology 2002, 11:2637-2647.
54. Schönswetter P., Tribsch A., Schneeweiss G.M., Niklfeld H. Disjunctions in relict alpine plants: phylogeography of Androsace brevis and A. wulfeniana (Primulaceae). Botanical Journal of the Linnean Society 2003, 141:437-446.
55. Schönswetter P., Tribsch A., Stehlik I., Niklfeld H. Glacial history of high alpine Ranunculus glacialis (Ranunculaceae) in the European Alps in a comparative phylogeographical context. Biological Journal of the Linnean Society 2004, 81:183-195.
56. Schönswetter P., Tribsch A. Vicariance and dispersal in the alpine perennial Bupleurum stellatum L. (Apiaceae). Taxon 2005, 54:725-732.
57. Segarra-Moragues J.G., Palop-Esteban M., González-Candelas F., Catalán P. Nunatak survival vs. tabula rasa in the Central Pyrenees: a study on the endemic plant species Borderea pyrenaica (Dioscoreaceae). Journal of Biogeography 2007, 34:1893-1906.
58. Stehlik I., Schneller J.J., Bachmann K. Immigration and in situ glacial survival of the low-alpine Erinus alpinus (Scrophulariaceae). Biological Journal of the Linnean Society 2002, 77:87-103.
59. Stuessy T.F. Plant Taxonomy. The Systematic Evaluation of Comparative Data 1990, Columbia University Press, New York.
60. Suc J.P., Bertini A., Combourieu-Nebout N., Diniz F., Leroy S., et al. Structure of West Mediterranean vegetation and climate since 5.3 Ma. Acta Zoologica Cracoviensis 1995, 38:3-16.
61. Szövényi P., Arroyo K., Guggisberg A., Conti E. Effects of Pleistocene glaciations on the genetic structure of Saxifraga florulenta (Saxifragaceae), a rare endemic of the Maritime Alps. Taxon 2009, 58:532-543.
62. Taberlet P., Gielly L., Patou G., Bouvet J. Universal primers for amplification of three noncoding regions of chloroplast DNA. Plant Molecular Biology 1991, 17:1105-1109.
63. Thiel-Egenter C., Gugerli F., Álvarez N., Brodbeck S., Cieslak E., Colli L., Englisch T., Gaudeul M., Gielly L., Korbecka G., Negrini R., Paun O., Pellecchia M., Rioux D., Ronikier M., Schönswetter P., Schüpfer F., Taberlet P., Tribsch A., van Loo M., Winkler M., Holderegger R., IntraBioDiv Consortium Effects of species traits on the genetic diversity of high-mountain plants: a multi-species study across the Alps and the Carpathians. Global Ecology and Biogeography 2009, 18:78-87.
64. Thompson J.D. Population differentiation in Mediterranean plants: insights into colonisation history and implications for species diversification. Heredity 1999, 82:229-236.
65. Thompson J.D. Plant Evolution in the Mediterranean 2005, Oxford University Press, Oxford.
66. Tribsch A., Schönswetter P., Stuessy T.F. Saponaria pumila (Caryophyllaceae) and the Ice Age in the European Alps. American Journal of Botany 2002, 89:2024-2033.
67. Vargas P. Molecular evidence for multiple diversification patterns of alpine plants in Mediterranean Europe. Taxon 2003, 52:463-476.
68. Vekemans X., Beauwens T., Lemaire M., Roldán-Ruiz I. Data from amplified fragment length polymorphism (AFLP) markers show indication of size homoplasy and of a relationship between degree of homoplasy and fragment size. Molecular Ecology 2002, 11:139-151.
69. Vos P., Hogers R., Bleeker R. AFLP: a new technique for DNA fingerprinting. Nucleic Acids Research 1995, 23:4407-4414.
70. Webb T., Bartlein P.J. Global changes during the last 3 million years: climatic controls and biotic response. Annual Review in Ecology and Systematics 1992, 23:141-173.
71. White T.J., Bruns T., Lee S., Taylor J. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. PCR Protocols: A Guide to Methods and Applications 1990, 315-322. Academic Press, New York. M.A. Innis, D.H. Gelfand, J.J. Sninsky, T.J. White (Eds.).
72. Young A., Boyle T., Brown T. The population genetic consequences of habitat fragmentation for plants. Trends in Ecology and Evolution 1996, 11:413-418.
73. Zhivotovsky L.A. Estimating population structure in diploids with multilocus dominant DNA markers. Molecular Ecology 1999, 8:907-913.
74. Zink R.M., Slowinski J.B. Evidence from molecular systematics for decreased avian diversification in the Pleistocene epoch. Proceedings of the National Academy of Sciences USA 1995, 92:5832-5835.