The uneven phylogeny and biogeography of Erodium (Geraniaceae): Radiations in the Mediterranean and recent recurrent intercontinental colonization

Annals of Botany

Volumn 106, Issue 6, 2010, Pages 871-884

  Fiz Palacios, Omar ^a   Vargas, Pablo ^a   Vila, Roger ^b   Papadopulos, Alexander S T ^c   Aldasoro, Juan José ^a  

^a CSIC   (Spain)

^b INSTITUTE OF EVOLUTIONARY BIOLOGY CSIC UNIVERSITAT POMPEU FABRA   (Spain)

^c IMPERIAL COLLEGE LONDON   (United Kingdom)

Author keywords

Biogeography; divergence times; diversification rate; Erodium; intercontinental dispersal; phylogenetics; radiation

Indexed keywords

ADAPTIVE RADIATION; BIOGEOGRAPHY; CLIMATE CHANGE; COLONIZATION; DICOTYLEDON; DISPERSAL; DIVERGENCE; DROUGHT; MEDITERRANEAN ENVIRONMENT; PHYLOGENETICS; PLASTID;

ARTICLE; CLASSIFICATION; GENETICS; GERANIACEAE; PHYLOGENY; PHYLOGEOGRAPHY; SOUTHERN EUROPE;

GERANIACEAE; MEDITERRANEAN REGION; PHYLOGENY; PHYLOGEOGRAPHY;

ERODIUM; GERANIACEAE; MYA;

EID: 78649536565     PISSN: 03057364     EISSN: 10958290     Source Type: Journal    
DOI: 10.1093/aob/mcq184     Document Type: Article

References (66)

1. APG III. 2009. An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III. Botanical Journal of the Linnean Society 161:105-121.
2. Baker HG, Cox PA. 1984. Further thoughts on dioecism and islands. Annals of the Missouri Botanical Garden 71:244-253.
3. Bakker FT, Breman F, Merckx V. 2006. DNA sequence evolution in fast evolving mitochondrial DNA nad1 exons in Geraniaceae and Plantaginaceae. Taxon 55:887-896.
4. Beier BA, Nylander JA, Chase MW, Thulin M. 2004. Phylogenetic relationships and biogeography of the desert plant genus Fagonia (Zygophyllaceae), inferred by parsimony and Bayesian model averaging. Molecular Phylogenetics and Evolution 33:91-108.
5. Besnard G, Rubio de Casas R, Christin PA, Vargas P. 2009. Phylogenetics of Olea (Oleaceae) based on plastid and nuclear ribosomal DNA sequences: Tertiary climatic shifts and lineage differentiation times. Annals of Botany 104:143-160.
6. Bocquet G, Widler B, Kiefer H. 1978. The Messinian model: a new outlook for the floristics and systematics of the Mediterranean area. Candollea 33:269-287.
7. Bromham L, Penny D, Rambaut A, Hendy MD. 2000. The power of relative rates tests depends on the data. Journal of Molecular Evolution 50:296-301.
8. Campbell CS, Wojciechowski MF, Baldwin BG, Alice LA, Donoghue MJ. 1997. Persistent nuclear ribosomal DNA sequence polymorphism in the Amelanchier agamic complex (Rosaceae). Molecular Biology and Evolution 14:81-90.
9. Chan KMA, Moore BR. 2005. SYMMETREE: whole-tree analysis of differential diversification rates. Bioinformatics 21:1709-1710.
10. Coleman M, Liston A, Kadereit JW, Abbott RJ. 2003. Repeat intercontinental dispersal and Pleistocene speciation in disjunct Mediterranean and desert Senecio (Asteraceae). American Journal of Botany 90:1446-1454.
11. Drummond AJ, Rambaut A. 2007. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evolutionary Biology 7:214.
12. Fiz O. 2005. Systematics and evolution of the family Geraniaceae: phylogenetic relationships of the genus Erodium. PhD Thesis, Universidad Autonoma de Madrid, Spain.
13. Fiz O, Valcárcel V, Vargas P. 2002. Phylogenetic position of Mediterranean Astereae and character evolution of daisies (Bellis, Asteraceae) inferred from nrDNA ITS sequences. Molecular Phylogenetics and Evolution 25:157-171.
14. Fiz O, Vargas P, Alarcón ML, Aldasoro JJ. 2006. Phylogenetic relationships and evolution in Erodium (Geraniaceae) based on trnL-trnF sequences. Systematic Botany 31:739-763.
15. Fiz O, Vargas P, Alarcón ML, Aedo C, García JL, Aldasoro JJ. 2008. Phylogeny and historical biogeography of Geraniaceae in relation to climate changes and pollination ecology. Systematic Botany 33:326-342.
16. Freeman DC, Dust JL, EL-Keblawya A, Miglia KJ, Durant E. 1997. Sexual specialization and inbreeding avoidance in the evolution of dioecy. Botanical Review 63:65-92.
17. Fuertes Aguilar J, Nieto Feliner G. 2003. Additive polymorphisms and reticulation in an ITS phylogeny of thrifts (Armeria, Plumbaginaceae). Molecular Phylogenetics and Evolution 28:430-447.
18. Garnock-Jones PJ. 1984. Ceratocephalus. New Zealand Journal of Botany 22:135-137.
19. Goertzen LR, Cannone JJ, Gutell RR, Jansen RK. 2003. ITS secondary structure derived from comparative analysis: implications for sequence alignment and phylogeny of the Asteraceae. Molecular Phylogenetics and Evolution 29:216-234.
20. Guisinger MM, Kuehl JV, Boore JL, Jansen RK. 2008. Genome-wide analyses of Geraniaceae plastid DNA reveal unprecedented patterns of increased nucleotide substitutions. Proccedings of the National Academy of Sciences, USA 105:18424-18429.
21. Guittonneau GG. 1990. Taxonomy, ecology and phylogeny of genus Erodium LHer. in the Mediterranean region. In: Voster P. ed. Proceedings of the International Geraniaceae Symposium. South Africa: Stellenbosch University, 71-91.
22. Heilbuth JC. 2000. Lower species richness in dioecious clades. American Naturalist 156:221-241.
23. Herrera J. 1991. Reproductive characteristics of a stable-dune therophyte community in Doñana (southern Spain). Israel Journal of Botany 40:295-304.
24. Hohmann S, Kadereit JW, Kadereit G. 2006. Understanding Mediterranean-Californian disjunctions: molecular evidence from Chenopodiaceae-Betoideae. Taxon 55:67-78.
25. Kers LE. 1968. Contributions to a revision of Monsonia (Geraniaceae). Botaniska Notiser 121:44-50.
26. Malcomber ST. 2002. Phylogeny of Gaertnera Lam. (Rubiaceae) based on multiple DNA markers: evidence of a rapid radiation in a widespread, morphologically diverse genus. Evolution 56:42-57.
27. Martín-Bravo S, Vargas P, Luceño M. 2009. Is Oligomeris (Resedaceae) indigenous to North America? Molecular evidence for a natural colonization from the Old World. American Journal of Botany 96:507-518.
28. Médail F, Diadema K. 2009. Glacial refugia influence plant diversity patterns in the Mediterranean Basin. Journal of Biogeography 36:1333-1345.
29. Mensing S, Byrne R. 2003. Pre-mission invasion of Erodium cicutarium in California. Journal of Biogeography 25:757-762.
30. Meyers SM, Liston A. 2008. The biogeography of Plantago ovata Forssk. (Plantaginaceae). International Journal of Plant Sciences 169:954-962.
31. Milne RI. 2006. Northern Hemisphere plant disjunctions: a window on tertiary land bridges and climate change?. Annals of Botany 98:465-72.
32. Moore BR, Chan KMA, Donoghue MJ. 2004. Detecting diversification rate variation in supertrees. In: Bininda-Emonds ORP. ed. Phylogenetic supertrees: combining information to reveal the tree of life. Dordrecht: Kluwer, 487-533.
33. Mort ME, Soltis PS, Soltis DE, Mabry M. 2000. Comparison of three methods for estimating internal support on phylogenetic trees. Systematics Biology 49:160-171.
34. Nylander JAA, Ronquist F, Huelsenbeck JP, Nieves-Aldrey J-L. 2004. Bayesian phylogenetic analysis of combined data. Systematic Biology 53:1-21.
35. Parkinson CL, Mower JP, Qiu Y-L, et al. 2005. Multiple major increases and decreases in mitochondrial substitution rates in the plant family Geraniaceae. BMC Evolutionary Biology 5:73.
36. Pons A, Quézel P. 1985. The history of the flora and vegetation and past and present human disturbance in the Mediterranean region. In: Gomez-Campo C. ed. Plant conservation in the Mediterranean area. Geobotany 7. Dordrecht: Kluwer, 25-43.
37. Posada D, Crandall KA. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14:817-818.
38. Rabosky DL. 2006. LASER: a maximum likelihood toolkit for detecting temporal shifts in diversification rates from molecular phylogenies. Evolutionary Bioinformatics Online 2:257-260.
39. Ree RH, Smith SA. 2008. Maximum likelihood inference of geographic range evolution by dispersal, local extinction, and cladogenesis. Systematic Biology 57:4-14.
40. Ree RH, Moore BR, Webb CO, Donoghue MJ. 2005. A likelihood framework for inferring the evolution of geographic range on phylogenetic trees. Evolution 59:2299-2311.
41. Ridley HN. 1930. The dispersal of plants throughout the world. Ashford, Kent: L. Reeve & Co.
42. Ronce O. 2007. How does it feel to be like a rolling stone? Ten questions about dispersal evolution. Annual Review of Ecology, Evolution, and Systematics 38:231-253.
43. Ronquist F. 1996. DIVA version 1·1. Computer program and manual available by anonymous FTP from Uppsala University.
44. Ronquist F, Huelsenbeck JP. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572-1574.
45. Rutschmann F, Torsten E, Kamariah A, Conti E. 2007. Assessing calibration uncertainty in molecular dating: the assignment of fossils to alternative calibration points. Systematic Biology 56:591-608.
46. Sakai AK, Wagner WL, Ferguson DM, Herbst DR. 1995. Origins of dioecy in the Hawaiian flora. Ecology 76:2517-2529.
47. Sang T, Crawford D, Stuessy T. 1995. Documentation of reticulate evolution in peonies (Paeonia) using internal transcribed spacer sequences of nuclear ribosomal: implications for biogeography and concerted evolution. Proceedings of the National Academy of Sciences, USA 92:6813-6817.
48. Schaefer H, Renner SS. 2010. A three-genome phylogeny of Momordica (Cucurbitaceae) suggests seven returns from dioecy to monoecy and recent long-distance dispersal to Asia. Molecular Phylogenetics and Evolution 54:553-560.
49. Shmida A. 1981. Mediterranean vegetation in California and Israel: similarities and differences. Israel Journal of Botany 30:105-123.
50. Shmida A, Ellner S. 1983. Seed dispersal on pastoral grazers in open Mediterranean chaparral, Israel. Israel Journal of Botany 32:147-159.
51. Slowinski JB, Guyer C. 1993. Testing whether certain traits have caused amplified diversification: an improved method based on a model of random speciation and extinction. American Naturalist 142:1019-1024.
52. Smissen RD. 2003. Phylogenetic analysis of ITS sequences suggests a Pliocene origin for the bipolar distribution of Scleranthus (Caryophyllaceae). Australian Systematic Botany 16:301-315.
53. Soria-Hernanz D, Fiz-Palacios O, Braverman JM, Hamilton MB. 2008. Reconsidering the generation time hypothesis based on nuclear ribosomal ITS sequence comparisons in annual and perennial angiosperms. BMC Evolutionary Biology 8:344.
54. Stamp NE. 1989. Seed dispersal of four sympatric grassland annual species of Erodium. Journal of Ecology 77:1005-1020.
55. Suc JP. 1984. Origin and evolution of the Mediterranean vegetation and climate in Europe. Nature 307:429-432.
56. Sun Y, Skinner DZ, Liang GH, Hulbert SH. 1994. Phylogeneticanalysis of Sorghum and related taxa using internal transcribed spacer of nuclear ribosomal DNA. Theoretical and Applied Genetics 89:26-32.
57. *: phylogenetic analysis using parsimony, Version 4·0. Illinois Natural History Survey, Champaign, IL.
58. Tiffney BH, Manchester SR. 2001. The use of geological and paleontological evidence in evaluating plant phylogeographic hypotheses in the Northern Hemisphere Tertiary. International Journal of Plant Sciences 162: S3-S17.
59. Thompson JD, Higgins DG, Gibson TJ. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalities and weight matrix choice. Nucleic Acids Research 22:4673-4680.
60. Valente LM, Savolainen V, Vargas P. 2010. Unparalleled rates of species diversification in Europe. Proceedings of the Royal Society. B. Biological Sciences 277:1489-1497.
61. Vamosi JC, Vamosi SM. 2005. Present day risk of extinction may exacerbate the lower species richness of dioecious clades. Diversity and Distributions 11:25-32.
62. Van Rheede K, Van Rooyen MW. 1999. Dispersal biology of desert plants. Berlin: Springer-Verlag.
63. Venter HJT. 1983. Phytogeography and interspecies relationships in Monsonia L. (Geraniaceae). Bothalia 14:865-869.
64. White TJ, Bruns T, Lee S, Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis M, Geldfand D, Sninsky J, White T. eds. PCR protocols: a guide to methods and applications. San Diego, CA: Academic Press, 315-322.
65. Whittall J, Liston A, Gisler S, Meinke RJ. 2000. Detecting nucleotide additivity from direct sequences is a SNAP: an example from Sidalcea (Malvaceae). Plant Biology 2:211-217.
66. Zeide B. 1976. Dispersal patterns in Erodium hirtum Willd. Israel Journal of Botany 25:221-224.