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Volumn 738, Issue , 2012, Pages 1-13

The origin of the bacterial immune response

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; REPETITIVE DNA; RESTRICTION ENDONUCLEASE;

EID: 84859830897     PISSN: 00652598     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-4614-1680-7_1     Document Type: Article
Times cited : (4)

References (50)
  • 1
    • 34548608256 scopus 로고    scopus 로고
    • Hypervariation and phase variation in the bacteriophage 'resistome'
    • DOI 10.1016/j.mib.2007.04.003, PII S1369527407000835, Host-microbe interactions: fungi/parasites/viruses
    • Hoskisson PA, Smith MCM. Hypervariation and phase variation in the bacteriophage 'resistome'. Curr Opin Microbiol 2007; 10:396-400. (Pubitemid 47404948)
    • (2007) Current Opinion in Microbiology , vol.10 , Issue.4 , pp. 396-400
    • Hoskisson, P.A.1    Smith, M.C.2
  • 3
    • 38949099077 scopus 로고    scopus 로고
    • The new phage biology: From genomics to applications
    • McGrath S and van Sinderen D, eds Norfolk: Caister Academic Press
    • McAuliffe O, Ross RP, Fitzgerald GF. The new phage biology: from genomics to applications. In: McGrath S and van Sinderen D, eds. Bacteriophage Genetics and Molecular Biology. Norfolk: Caister Academic Press 2007: 1-42.
    • (2007) Bacteriophage Genetics and Molecular Biology , pp. 1-42
    • McAuliffe, O.1    Ross, R.P.2    Fitzgerald, G.F.3
  • 4
    • 0038392706 scopus 로고    scopus 로고
    • Bacteriophage obserations and evolution
    • Ackermann H-W. Bacteriophage obserations and evolution. Res Microbiol 2003; 154:245-251.
    • (2003) Res Microbiol , vol.154 , pp. 245-251
    • Ackermann, H.-W.1
  • 6
    • 0037825641 scopus 로고    scopus 로고
    • Prophages and bacterial genomics: What have we learned so far?
    • DOI 10.1046/j.1365-2958.2003.03580.x
    • Casjens S. Prophages and bacterial genomics: what have we learned so far? Mol Microbiol 2003; 49:277-300. (Pubitemid 36851187)
    • (2003) Molecular Microbiology , vol.49 , Issue.2 , pp. 277-300
    • Casjens, S.1
  • 8
    • 4644280174 scopus 로고    scopus 로고
    • Tropism switching in Bordetella bacteriophage defines a family of diversity-generating retroelements
    • Doulatov S, Hodes A, Dai L, et al. Tropism switching in Bordetella bacteriophage defines a family of diversity-generating retroelements. Nature 2004; 431:473-481.
    • (2004) Nature , vol.431 , pp. 473-481
    • Doulatov, S.1    Hodes, A.2    Dai, L.3
  • 10
    • 63149174885 scopus 로고    scopus 로고
    • The structure and biological aspects of peptide antibiotic microcin J25
    • Vicent PA, Morero RD. The structure and biological aspects of peptide antibiotic microcin J25. Curr Med Chem 2009; 16:538-549.
    • (2009) Curr Med Chem , vol.16 , pp. 538-549
    • Vicent, P.A.1    Morero, R.D.2
  • 11
    • 0023050268 scopus 로고
    • Evidence that TraT interacts with OmpA of Escherichia coli
    • Riede I, Eschbach M-L. Evidence that TraT interacts with OmpA of Escherichia coli. FEBS Lett 1986; 205:241-245.
    • (1986) FEBS Lett , vol.205 , pp. 241-245
    • Riede, I.1    Eschbach, M.-L.2
  • 12
    • 0030739054 scopus 로고    scopus 로고
    • Characterization of the lysogeny DNA module from the temperate Streptococcus thermophilus bacteriophage φSfi21
    • DOI 10.1006/viro.1997.8603
    • Bruttin A, Desiere F, Lucchini S, et al. Characterization of the lysogeny DNA module from teteperate Streptococcus thermophilus bacteriophage Sfi21. Virology 1997; 233:136-148. (Pubitemid 27348775)
    • (1997) Virology , vol.233 , Issue.1 , pp. 136-148
    • Bruttin, A.1    Desiere, F.2    Lucchini, S.3    Foley, S.4    Brussow, H.5
  • 13
    • 0036172406 scopus 로고    scopus 로고
    • Identification and characterization of phage-resistance genes in temperate lactococcal bacteriophages
    • DOI 10.1046/j.1365-2958.2002.02763.x
    • McGrath S, fitzgerald GF, van Sinderen D. Identification and characterization of phage-resistance genes in temperate lactococcal bacteriophages. Mol Microbiol 2002; 43:509-520. (Pubitemid 34146739)
    • (2002) Molecular Microbiology , vol.43 , Issue.2 , pp. 509-520
    • McGrath, S.1    Fitzgerald, G.F.2    Van Sinderen, D.3
  • 16
    • 0036888013 scopus 로고    scopus 로고
    • The efficacy of bacteriophages as a method of biofilm eradication
    • Tait K, Sutherland IW. The efficacy of bacteriophages as a method of biofilm eradication. Biofouling 2002; 18:305-310.
    • (2002) Biofouling , vol.18 , pp. 305-310
    • Tait, K.1    Sutherland, I.W.2
  • 17
    • 0037323095 scopus 로고    scopus 로고
    • Bacterial coaggregation: An integral process in the development of multi-species biofilms
    • DOI 10.1016/S0966-842X(02)00034-3
    • Richard AH, Gilbert P, High NJ, et al. Bacterial coaggregation: an integral process in the development of multi-species biofilms. Trends microbial 2003; 11:94-100. (Pubitemid 36207506)
    • (2003) Trends in Microbiology , vol.11 , Issue.2 , pp. 94-100
    • Rickard, A.H.1    Gilbert, P.2    High, N.J.3    Kolenbrander, P.E.4    Handley, P.S.5
  • 18
    • 70449412955 scopus 로고    scopus 로고
    • Acyl-homoserine lactones can induce virus production in lysogenic bacteria: An alternative paradigm for prophage induction
    • Ghosh D, Roy K, Williamson KE, et al. Acyl-homoserine lactones can induce virus production in lysogenic bacteria: an alternative paradigm for prophage induction. Appl Environ Microbiol 2009; 75:7142-7152.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 7142-7152
    • Ghosh, D.1    Roy, K.2    Williamson, K.E.3
  • 20
    • 0022797346 scopus 로고
    • A possible role for DNA restriction in bacterial evolution
    • Price C, Bickle TA. A possible role for DNA restriction in bacterial evolution. Microbiol Sci 1986; 3:296-299.
    • (1986) Microbiol Sci , vol.3 , pp. 296-299
    • Price, C.1    Bickle, T.A.2
  • 21
    • 22544464152 scopus 로고    scopus 로고
    • The biology ofrestriction and anti-restriction
    • Tock MR, Dryden DTF. The biology ofrestriction and anti-restriction. Curr Opin Microbiol 2005; 8:466-472.
    • (2005) Curr Opin Microbiol , vol.8 , pp. 466-472
    • Tock, M.R.1    Dtf, D.2
  • 22
    • 0037389511 scopus 로고    scopus 로고
    • A nomenclature for restriction enzymes, DNA methytransferases, homing endonucelases and their genes
    • Roberts RJ, et al. A nomenclature for restriction enzymes, DNA methytransferases, homing endonucelases and their genes. Nucleic Acids Res 2003; 31:1805-1812.
    • (2003) Nucleic Acids Res , vol.31 , pp. 1805-1812
    • Roberts, R.J.1
  • 23
    • 0023711634 scopus 로고
    • Abolition of DNA recognition site resistance to the restriction endonuclease EcoRII
    • Kruger DH, Barcak GJ, Smith HO. Abolition of DNA recognition site resistance to the restriction endonuclease EcoRII. Biomed Biochim Acta 1988; 47:K1-K5.
    • (1988) Biomed Biochim Acta , vol.47
    • Kruger, D.H.1    Barcak, G.J.2    Smith, H.O.3
  • 24
    • 33846591325 scopus 로고    scopus 로고
    • A Type IV Modification Dependent Restriction Nuclease that Targets Glucosylated Hydroxymethyl Cytosine Modified DNAs
    • DOI 10.1016/j.jmb.2006.11.051, PII S0022283606015919
    • Blair CL, Black LW. A type IV modification dependent restriction nuclease that targets glucosylated hydroxymethyl cytosine modified DNAs. J Mol Biol 2007; 366:768-778. (Pubitemid 46175865)
    • (2007) Journal of Molecular Biology , vol.366 , Issue.3 , pp. 768-778
    • Bair, C.L.1    Black, L.W.2
  • 25
    • 33846586309 scopus 로고    scopus 로고
    • Exclusion of glucosyl-hydroxymethylcytosine DNA containing bacteriophages is overcome by the injected protein inhibitor IPI
    • DOI 10.1016/j.jmb.2006.11.049, PII S0022283606015890
    • Blair CL, Rifat D, Black LW. Exclusion of glucosyl-hydroxymethylcytosine DNA containing bacteriophages is overcome by the injected protein inhibitor IPI . J Mol Biol 2007; 366:779-789. (Pubitemid 46175864)
    • (2007) Journal of Molecular Biology , vol.366 , Issue.3 , pp. 779-789
    • Bair, C.L.1    Rifat, D.2    Black, L.W.3
  • 26
    • 0029157076 scopus 로고
    • Two genes involved in the phase-variable phi C31 resistance mechanism of Streptomyces coelicolor A3(2)
    • Bedford D, Laity C, Buttner MJ. Two genes involved in the phase-variable phi C31 resistance mechanism of Streptomyces coelicolor A3(2). J Bacteriol 1995; 177:4681-4689.
    • (1995) J Bacteriol , vol.177 , pp. 4681-4689
    • Bedford, D.1    Laity, C.2    Buttner, M.J.3
  • 27
    • 0038105036 scopus 로고    scopus 로고
    • Phase variation in the phage growth limitation system of Streptomyces coelicolor A3(2)
    • DOI 10.1128/JB.185.15.4558-4563.2003
    • Sumby P, Smit MCM. Phase variation in the phage growth limitation system of Streptomices coelicor A3(2). J Bacteriol 2003; 4558-4563. (Pubitemid 36890503)
    • (2003) Journal of Bacteriology , vol.185 , Issue.15 , pp. 4558-4563
    • Sumby, P.1    Smith, M.C.M.2
  • 28
    • 0017156121 scopus 로고
    • SAMase gene of bacteriophage T3 is responsible for overcoming host restriction
    • Studier FW, Novva NR. SAMase gene of bacteriophage T3 is responsible for overcoming host restriction. J Virol 1976; 19:136-145.
    • (1976) J Virol , vol.19 , pp. 136-145
    • Studier, F.W.1    Novva, N.R.2
  • 29
    • 0036161805 scopus 로고    scopus 로고
    • Structure of OCR from bacteriophage T7, a protein that mimics B-form DNA
    • Walkinshaw MD, Taylor P, Sturrock SS, et al. Structure of OCR from bacteriophage T7, a protein that mimics B-form DNA. Mol Cell 2002; 9:18-94.
    • (2002) Mol Cell , vol.9 , pp. 18-94
    • Walkinshaw, M.D.1    Taylor, P.2    Sturrock, S.S.3
  • 31
    • 44449133775 scopus 로고    scopus 로고
    • Virus population dynamics and acquired virus resistance in natural microbial communities
    • DOI 10.1126/science.1157358
    • Andersson AF, Banfield JF. Virus population dynamics and acquired virus resistance in natural microbial communities. Science 2008; 320:1047-1050. (Pubitemid 351929541)
    • (2008) Science , vol.320 , Issue.5879 , pp. 1047-1050
    • Andersson, A.F.1    Banfield, J.F.2
  • 32
    • 0023600057 scopus 로고
    • Nucleotide sequence of the iap gene, responsible for alkaline phosphatase isoenzyme conversion in Escherichia coli, and identification of the gene product
    • Ishino Y, Shinagawa H, Makino K, et al. Nucleotide sequence of the iap gene, responsible for alkaline phosphatase isozyme conversion in Escherichia coli and identification of the gene product. J Bacteriol 1987; 169:5429-5433. (Pubitemid 18017837)
    • (1987) Journal of Bacteriology , vol.169 , Issue.12 , pp. 5429-5433
    • Ishino, Y.1    Shinagawa, H.2    Makino, K.3    Amemura, M.4    Nakatura, A.5
  • 33
    • 0036267740 scopus 로고    scopus 로고
    • Identification of genes that are associated with DNA repeats in prokaryotes
    • DOI 10.1046/j.1365-2958.2002.02839.x
    • Jansen R, Embden JD, Gaastra W, et al. Identification of genes that are associated with DNA repeats in prokaryotes. Mol Microbiol 2002; 43:1565-1575. (Pubitemid 34595547)
    • (2002) Molecular Microbiology , vol.43 , Issue.6 , pp. 1565-1575
    • Jansen, R.1    Van Embden, J.D.A.2    Gaastra, W.3    Schouls, L.M.4
  • 34
    • 77249170201 scopus 로고    scopus 로고
    • CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea
    • Marraffini LA, Sontheimer EJ. CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea. Nat Rev Genet 2010; 11:181-190.
    • (2010) Nat Rev Genet , vol.11 , pp. 181-190
    • Marraffini, L.A.1    Sontheimer, E.J.2
  • 36
    • 34250662138 scopus 로고    scopus 로고
    • The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats
    • Grissa I, Vergnaud G, Pourcel C. The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats. BMC Bioinformatics 2007; 8:172.
    • (2007) BMC Bioinformatics , vol.8 , pp. 172
    • Grissa, I.1    Vergnaud, G.2    Pourcel, C.3
  • 37
    • 35748974534 scopus 로고    scopus 로고
    • Evolutionary conservation of sequence and secondary structures in CRISPR repeats
    • Kunin V, Sorek R, Hugenholtz P. Evolutionary conservation of sequence and secondary structures in CRISPR repeats. Genome Biol 2007; 8:R61.
    • (2007) Genome Biol , vol.8
    • Kunin, V.1    Sorek, R.2    Hugenholtz, P.3
  • 38
    • 16444385662 scopus 로고    scopus 로고
    • Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements
    • DOI 10.1007/s00239-004-0046-3
    • Mojica FJ, Dfez-Villasenor C, Garcfa-Martfnez J, et al. Intervening sequences ofregularly spaced prokaryotic repeats derive from foreign genetic elements. J Mol Evol 2005; 60:174-182. (Pubitemid 40568857)
    • (2005) Journal of Molecular Evolution , vol.60 , Issue.2 , pp. 174-182
    • Mojica, F.J.M.1    Diez-Villasenor, C.2    Garcia-Martinez, J.3    Soria, E.4
  • 39
    • 62949197925 scopus 로고    scopus 로고
    • CRISPR families ofthe crenarchaeal genus Sulfolobus: Bidirectional transcription and dynamic properties
    • Lillestol RK, Shah SA, Brugger K, et al. CRISPR families ofthe crenarchaeal genus Sulfolobus: bidirectional transcription and dynamic properties. Mol Microbiol 2009; 72:259-272.
    • (2009) Mol Microbiol , vol.72 , pp. 259-272
    • Lillestol, R.K.1    Shah, S.A.2    Brugger, K.3
  • 40
    • 57049149666 scopus 로고    scopus 로고
    • Prokaryotic silencing (psi)RNAs in Pyrococcus furiosus
    • Hale C, Kleppe K, Terns RM, et al. Prokaryotic silencing (psi)RNAs in Pyrococcus furiosus. RNA 2008; 14:2572-2579.
    • (2008) RNA , vol.14 , pp. 2572-2579
    • Hale, C.1    Kleppe, K.2    Terns, R.M.3
  • 41
    • 34248400310 scopus 로고    scopus 로고
    • A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes
    • Haft DH, Selengut J, Mongodin EF, et al. A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes. PLoS Comput Biol 2005; 1:e60.
    • (2005) PLoS Comput Biol , vol.1
    • Haft, D.H.1    Selengut, J.2    Mongodin, E.F.3
  • 42
    • 66349134987 scopus 로고    scopus 로고
    • Structural basis for DNase activity of a conserved protein implicated in CRISPR-mediated genome defense
    • Wiedenheft B, Zhou K, Jinek M, et al. Structural basis for DNase activity of a conserved protein implicated in CRISPR-mediated genome defense. Structure 2009; 17:904-912.
    • (2009) Structure , vol.17 , pp. 904-912
    • Wiedenheft, B.1    Zhou, K.2    Jinek, M.3
  • 43
    • 49649120271 scopus 로고    scopus 로고
    • A novel family of sequence-specific endoribonucleases associated with the clustered regularly interspaced short palindromic repeats
    • Beloglazova N, Brown G, Zimmerman MD, et al. A novel family of sequence-specific endoribonucleases associated with the clustered regularly interspaced short palindromic repeats. J Biol Chem 2008; 283:20361-20371.
    • (2008) J Biol Chem , vol.283 , pp. 20361-20371
    • Beloglazova, N.1    Brown, G.2    Zimmerman, M.D.3
  • 44
    • 49649114086 scopus 로고    scopus 로고
    • Small CRISPR RNAs guide antiviral defense in prokaryotes
    • Brouns SJ, Jore MM, Lundgren M, et al. Small CRISPR RNAs guide antiviral defense in prokaryotes. Science 2008; 321:960-964.
    • (2008) Science , vol.321 , pp. 960-964
    • Brouns, S.J.1    Jore, M.M.2    Lundgren, M.3
  • 45
    • 58049191229 scopus 로고    scopus 로고
    • Cas6 is an endoribonuclease that generates guide RNAs for invader defense in prokaryotes
    • Carte J, Wang R, Li H, et al. Cas6 is an endoribonuclease that generates guide RNAs for invader defense in prokaryotes. Genes Dev 2008; 22:3489-3496.
    • (2008) Genes Dev , vol.22 , pp. 3489-3496
    • Carte, J.1    Wang, R.2    Li, H.3
  • 46
    • 34248374277 scopus 로고    scopus 로고
    • A putative RNA-interference-based immune system in prokaryotes: Computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi and hypothetical mechanisms of action
    • Makarova KS, Grishin NV, Shabalina SA, et al. A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi and hypothetical mechanisms of action. Biol Direct 2006; 1:7.
    • (2006) Biol Direct , vol.1 , pp. 7
    • Makarova, K.S.1    Grishin, N.V.2    Shabalina, S.A.3
  • 47
    • 75749118174 scopus 로고    scopus 로고
    • Self* versus nonself discrimination during CRISPR RNA-directed immunity
    • Marraffini LA, Sontheimer EJ. Self* versus nonself discrimination during CRISPR RNA-directed immunity. Nature 2010; 463:568-571.
    • (2010) Nature , vol.463 , pp. 568-571
    • Marraffini, L.A.1    Sontheimer, E.J.2
  • 48
    • 0028953424 scopus 로고
    • Phage-exclusion enzymes: A bonanza of biochemical and cell biology reagent?
    • Snyder L. Phage-exclusion enzymes: a bonanza of biochemical and cell biology reagent? Mol Microbiol 1995; 15:415-420.
    • (1995) Mol Microbiol , vol.15 , pp. 415-420
    • Snyder, L.1
  • 49
    • 2342494385 scopus 로고    scopus 로고
    • Over-expression of rexA nullifies T4rII exclusion in Escherichia coli K(λ) lysogens
    • DOI 10.1139/w03-115
    • Slavcev RA, Hayes S. Over-expression of rexA nullifies T4rII exclusion in Escherichia coli K(X) lysogens. Can J Microbiol 2004; 50:133-136. (Pubitemid 38594749)
    • (2004) Canadian Journal of Microbiology , vol.50 , Issue.2 , pp. 133-136
    • Slavcev, R.A.1    Hayes, S.2
  • 50
    • 0023388202 scopus 로고
    • Bacteriophage T4 anticodon nuclease, polynucleotide kinase and RNA ligase reprocess the host lysine tRNA
    • Amitsur M, Levitz R, Kaufmann G. Bacteriophage T4 anticodon nuclease, polynucleotide kinase and RNA ligase reprocess the host lysine tRNA. EMBO J 1987; 6:2499-2503.
    • (1987) EMBO J , vol.6 , pp. 2499-2503
    • Amitsur, M.1    Levitz, R.2    Kaufmann, G.3


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