메뉴 건너뛰기




Volumn 50, Issue 4, 2012, Pages 368-377

Rpb2 is a reliable reference gene for quantitative gene expression analysis in the dermatophyte Trichophyton rubrum

Author keywords

Expression; Gene; QRT PCR; Reference genes; Trichophyton rubrum

Indexed keywords

ACRIFLAVINE; CHITIN SYNTHASE; DNA DIRECTED RNA POLYMERASE; DNA DIRECTED RNA POLYMERASE II; TERBINAFINE; UNCLASSIFIED DRUG;

EID: 84859736181     PISSN: 13693786     EISSN: 14602709     Source Type: Journal    
DOI: 10.3109/13693786.2011.616230     Document Type: Article
Times cited : (48)

References (34)
  • 1
    • 77749338122 scopus 로고    scopus 로고
    • Transcriptional profi ling reveals the expression of novel genes in response to various stimuli in the human dermatophyte Trichophyton rubrum
    • Peres NTA, Sanches PR, Falcão JP, et al . Transcriptional profi ling reveals the expression of novel genes in response to various stimuli in the human dermatophyte Trichophyton rubrum . BMC Microbiol 2010; 10 : 39.
    • (2010) BMC Microbiol. , vol.10 , pp. 39
    • Peres, N.T.A.1    Sanches, P.R.2    Falcão, J.P.3
  • 2
    • 34249094772 scopus 로고    scopus 로고
    • The use of global transcriptional analysis to reveal the biological and cellular events involved in distinct development phases of Trichophyton rubrum conidial germination
    • Liu T, Zhang Q, Wang L, et al . The use of global transcriptional analysis to reveal the biological and cellular events involved in distinct development phases of Trichophyton rubrum conidial germination. BMC Genomics 2007; 8 : 100.
    • (2007) BMC Genomics , vol.8 , pp. 100
    • Liu, T.1    Zhang, Q.2    Wang, L.3
  • 3
    • 64149097786 scopus 로고    scopus 로고
    • The MIQE guidelines: Minimum information for publication of quantitative real-time PCR experiments
    • Bustin SA, Benes V, Garson JA, et al . The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments. Clin Chem 2009; 55 : 611-622.
    • (2009) Clin. Chem. , vol.55 , pp. 611-622
    • Bustin, S.A.1    Benes, V.2    Garson, J.A.3
  • 4
    • 33644975004 scopus 로고    scopus 로고
    • RNA integrity and the effect on the real-time qRT-PCR performance
    • Fleige S, Pfaffl MW. RNA integrity and the effect on the real-time qRT-PCR performance. Mol Asp Med 2006; 27 : 126-139.
    • (2006) Mol. Asp. Med. , vol.27 , pp. 126-139
    • Fleige, S.1    Pfaffl, M.W.2
  • 5
    • 0037129827 scopus 로고    scopus 로고
    • Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
    • Research0034. 0031-0034.0011
    • Vandesompele J, De Preter K, Pattyn F, et al . Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol 2002; 3 : Research0034. 0031-0034.0011.
    • (2002) Genome. Biol. , vol.3
    • Vandesompele, J.1    De Preter, K.2    Pattyn, F.3
  • 6
    • 77950476641 scopus 로고    scopus 로고
    • Validation of reference genes for quantitative real-time PCR during leaf and fl ower development in Petunia hybrida
    • Mallona I, Lischewski S, Weiss J, Hause B, Egea-Cortines M. Validation of reference genes for quantitative real-time PCR during leaf and fl ower development in Petunia hybrida . BMC Plant Biol 2010; 10 : 4.
    • (2010) BMC Plant. Biol. , vol.10 , pp. 4
    • Mallona, I.1    Lischewski, S.2    Weiss, J.3    Hause, B.4    Egea-Cortines, M.5
  • 7
    • 79952170543 scopus 로고    scopus 로고
    • Selection and reliability of internal reference genes for quantitative PCR verifi cation of transcriptomics during the differentiation process of porcine adult mesenchymal stem cells
    • Monaco E, Bionaz M, de Lima AS, et al . Selection and reliability of internal reference genes for quantitative PCR verifi cation of transcriptomics during the differentiation process of porcine adult mesenchymal stem cells. Stem Cell Res Ther 2010; 1 : 7.
    • (2010) Stem. Cell Res. Ther. , vol.1 , pp. 7
    • Monaco, E.1    Bionaz, M.2    De Lima, A.S.3
  • 8
    • 77049088223 scopus 로고    scopus 로고
    • Selection of appropriate reference genes for gene expression studies by quantitative real-time polymerase chain reaction in cucumber
    • Wan H, Zhao Z, Qian C, et al . Selection of appropriate reference genes for gene expression studies by quantitative real-time polymerase chain reaction in cucumber. Analytic Biochem 2010; 399 : 257-261.
    • (2010) Analytic. Biochem. , vol.399 , pp. 257-261
    • Wan, H.1    Zhao, Z.2    Qian, C.3
  • 9
    • 36549007528 scopus 로고    scopus 로고
    • Global gene expression of Trichophyton rubrum in response to PH11B, a novel fatty acid synthase inhibitor
    • DOI 10.1111/j.1365-2672.2007.03521.x
    • Yu L, Zhang W, Liu T, et al . Global gene expression of T richophyton rubrum in response to PH11B, a novel fatty acid synthase inhibitor. J Appl Microbiol 2007; 103 : 2346-2352. (Pubitemid 350191210)
    • (2007) Journal of Applied Microbiology , vol.103 , Issue.6 , pp. 2346-2352
    • Yu, L.1    Zhang, W.2    Liu, T.3    Wang, X.4    Peng, J.5    Li, S.6    Jin, Q.7
  • 10
    • 66449110547 scopus 로고    scopus 로고
    • Transcriptional profi les of Trichophyton rubrum in response to itraconazole
    • Diao Y, Zhao R, Deng X, et al . Transcriptional profi les of Trichophyton rubrum in response to itraconazole. Med Mycol 2009; 47 : 237-247.
    • (2009) Med. Mycol. , vol.47 , pp. 237-247
    • Diao, Y.1    Zhao, R.2    Deng, X.3
  • 11
    • 47349100162 scopus 로고    scopus 로고
    • Real-time RT-PCR expression analysis of chitinase and endoglucanase genes in the three-way interaction between the biocontrol strain Clonostachys rosea IK726, Botrytis cinerea and strawberry
    • DOI 10.1111/j.1574-6968.2008.01228.x
    • Mamarabadi M, Jensen B, Jensen DF, Lubeck M. Real-time RT-PCR expression analysis of chitinase and endoglucanase genes in the threeway interaction between the biocontrol strain Clonostachys rosea IK726, Botrytis cinerea and strawberry. FEMS Microbiol Lett 2008; 285 : 101-110. (Pubitemid 352000222)
    • (2008) FEMS Microbiology Letters , vol.285 , Issue.1 , pp. 101-110
    • Mamarabadi, M.1    Jensen, B.2    Jensen, D.F.3    Lubeck, M.4
  • 12
    • 71049124898 scopus 로고    scopus 로고
    • Expression dynamics of secreted protease genes in Trichophyton rubrum induced by key host ' s proteinaceous components
    • Leng W, Liu T, Wang J, Li R, Jin Q. Expression dynamics of secreted protease genes in Trichophyton rubrum induced by key host ' s proteinaceous components. Med Mycol 2009; 47 : 759-765.
    • (2009) Med. Mycol. , vol.47 , pp. 759-765
    • Leng, W.1    Liu, T.2    Wang, J.3    Li, R.4    Jin, Q.5
  • 13
    • 77950925983 scopus 로고    scopus 로고
    • Selection of endogenous genes for gene expression studies in Eucalyptus under biotic ( Puccinia psidii ) and abiotic (acibenzolar-S-methyl) stresses using RT-qPCR
    • Boava LP, Laia ML, Jacob TR, et al . Selection of endogenous genes for gene expression studies in Eucalyptus under biotic ( Puccinia psidii ) and abiotic (acibenzolar-S-methyl) stresses using RT-qPCR. BMC Res Notes 2010; 3 : 43-52.
    • (2010) BMC Res. Notes , vol.3 , pp. 43-52
    • Boava, L.P.1    Laia, M.L.2    Jacob, T.R.3
  • 15
    • 57749113093 scopus 로고    scopus 로고
    • Towards a systematic validation of references in real-time RT-PCR
    • DOI 10.1105/tpc.108.059774
    • Gutierrez L, Mauriat M, Pelloux J, Bellini C, Van Wuytswinkel O. Towards a systematic validation of references in real-time rt-PCR. Plant Cell 2008; 20 : 1734-1735. (Pubitemid 352844527)
    • (2008) Plant Cell , vol.20 , Issue.7 , pp. 1734-1735
    • Gutierrez, L.1    Mauriat, M.2    Pelloux, J.3    Bellini, C.4    Van Wuytswinkel, O.5
  • 16
    • 77649159712 scopus 로고    scopus 로고
    • Validation of reference genes for gene expression analysis in chicory ( Cichorium intybus ) using quantitative real-time PCR
    • Maroufi A, Van Bockstaele E, De Loose M. Validation of reference genes for gene expression analysis in chicory ( Cichorium intybus ) using quantitative real-time PCR. BMC Mol Biol 2010; 11 : 15.
    • (2010) BMC Mol. Biol. , vol.11 , pp. 15
    • Maroufi, A.1    Van Bockstaele, E.2    De Loose, M.3
  • 17
    • 79955933565 scopus 로고    scopus 로고
    • Selection and validation of reference genes for gene expression studies by reverse transcription quantitative PCR in Xanthomonas citri subsp. citri during infection of Citrus sinensis
    • Jacob TR, Laia ML, Ferro JA, Ferro MI. Selection and validation of reference genes for gene expression studies by reverse transcription quantitative PCR in Xanthomonas citri subsp. citri during infection of Citrus sinensis . Biotechnol Lett 2011; 33 : 1177-1184.
    • (2011) Biotechnol. Lett. , vol.33 , pp. 1177-1184
    • Jacob, T.R.1    Laia, M.L.2    Ferro, J.A.3    Ferro, M.I.4
  • 18
    • 33750466866 scopus 로고    scopus 로고
    • The pH signaling transcription factor PacC mediates the growth of Trichophyton rubrum on human nail in vitro
    • DOI 10.1080/13693780600876553, PII Q58N5703150472K4
    • Ferreira-Nozawa MS, Silveira HCS, Ono CJ, et al . The pH signaling transcription factor PacC mediates the growth of Trichophyton rubrum on human nail in vitro . Med Mycol 2006; 44 : 641-645. (Pubitemid 44650514)
    • (2006) Medical Mycology , vol.44 , Issue.7 , pp. 641-645
    • Ferreira-Nozawa, M.S.1    Silveira, H.C.S.2    Ono, C.J.3    Fachin, A.L.4    Rossi, A.5    Martinez-Rossi, N.M.6
  • 19
    • 0014011862 scopus 로고
    • The induction and repression of nitrate reductase in the fungus Aspergillus nidulans
    • Cove DJ. The induction and repression of nitrate reductase in the fungus Aspergillus nidulans . Biochim Biophys Acta 1966; 113 : 51-56.
    • (1966) Biochim. Biophys. Acta. , vol.113 , pp. 51-56
    • Cove, D.J.1
  • 20
    • 1642505612 scopus 로고    scopus 로고
    • The pathogenesis of dermatophyte infections in human skin sections
    • DOI 10.1016/j.jinf.2003.09.008
    • Duek L, Kaufman G, Ulman Y, Berdicevsky I. The pathogenesis of dermatophyte infections in human skin sections. J Infection 2004; 48 : 175-180. (Pubitemid 38128491)
    • (2004) Journal of Infection , vol.48 , Issue.2 , pp. 175-180
    • Duek, L.1    Kaufman, G.2    Ulman, Y.3    Berdicevsky, I.4
  • 21
    • 34547782785 scopus 로고    scopus 로고
    • CDNA microarray analysis of the expression profiles of Trichophyton rubrum in response to novel synthetic fatty acid synthase inhibitor PHS11A
    • DOI 10.1016/j.fgb.2007.03.002, PII S1087184507000527
    • Zhang W, Yu L, Leng W, et al . cDNA microarray analysis of the expression profi les of Trichophyton rubrum in response to novel synthetic fatty acid synthase inhibitor PHS11A. Fungal Genet Biol 2007; 44 : 1252-1261. (Pubitemid 350046347)
    • (2007) Fungal Genetics and Biology , vol.44 , Issue.12 , pp. 1252-1261
    • Zhang, W.1    Yu, L.2    Leng, W.3    Wang, X.4    Wang, L.5    Deng, X.6    Yang, J.7    Liu, T.8    Peng, J.9    Wang, J.10    Li, S.11    Jin, Q.12
  • 22
    • 75649111237 scopus 로고    scopus 로고
    • Global transcriptional profi les of Trichophyton rubrum in response to Flucytosine
    • Zhao R, Bin W, Diao Y, et al . Global transcriptional profi les of Trichophyton rubrum in response to Flucytosine. Sci China C Life Sci 2009; 52 : 1173-1185.
    • (2009) Sci. China. C Life Sci. , vol.52 , pp. 1173-1185
    • Zhao, R.1    Bin, W.2    Diao, Y.3
  • 23
    • 78751504435 scopus 로고    scopus 로고
    • Doxorubicin induces drug effl ux pumps in Candida albicans
    • Kofl a G, Turner V, Schulz B, et al . Doxorubicin induces drug effl ux pumps in Candida albicans . Med Mycol 2011; 49 : 132-142.
    • (2011) Med. Mycol. , vol.49 , pp. 132-142
    • Kofla, G.1    Turner, V.2    Schulz, B.3
  • 24
    • 77956827111 scopus 로고    scopus 로고
    • Pseudohyphal regulation by the transcription factor Rfg1p in Candida albicans
    • Cleary IA, Mulabagal P, Reinhard SM, et al . Pseudohyphal regulation by the transcription factor Rfg1p in Candida albicans . Eukaryot Cell 2010; 9 : 1363-1373.
    • (2010) Eukaryot. Cell , vol.9 , pp. 1363-1373
    • Cleary, I.A.1    Mulabagal, P.2    Reinhard, S.M.3
  • 25
    • 84860323649 scopus 로고    scopus 로고
    • Molecular cloning, characterization and differential expression of Cdc42 in Fonsecaea monophora
    • Xie Z, Feng P, Zhang J, et al . Molecular cloning, characterization and differential expression of Cdc42 in Fonsecaea monophora . Mol Biol Rep 2011.
    • (2011) Mol. Biol. Rep.
    • Xie, Z.1    Feng, P.2    Zhang, J.3
  • 26
    • 3442876969 scopus 로고    scopus 로고
    • Normalization of real-time quantitative reverse transcription-PCR data: A model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets
    • DOI 10.1158/0008-5472.CAN-04-0496
    • Andersen CL, Jensen JL, Orntoft TF. Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets. Cancer Res 2004; 64 : 5245-5250. (Pubitemid 39006544)
    • (2004) Cancer Research , vol.64 , Issue.15 , pp. 5245-5250
    • Andersen, C.L.1    Jensen, J.L.2    Orntoft, T.F.3
  • 27
    • 1842483281 scopus 로고    scopus 로고
    • Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper - Excel-based tool using pair-wise correlations
    • DOI 10.1023/B:BILE.0000019559.84305.47
    • Pfaffl MW, Tichopad A, Prgomet C, Neuvians TP. Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper - Excel-based tool using pair-wise correlations. Biotechnol Let 2004; 26 : 509-515. (Pubitemid 38448421)
    • (2004) Biotechnology Letters , vol.26 , Issue.6 , pp. 509-515
    • Pfaffl, M.W.1    Tichopad, A.2    Prgomet, C.3    Neuvians, T.P.4
  • 29
    • 40649110804 scopus 로고    scopus 로고
    • Over-expression of genes coding for proline oxidase, riboflavin kinase, cytochrome c oxidase and an MFS transporter induced by acriflavin in Trichophyton rubrum
    • DOI 10.1080/13693780701742381, PII 784701236
    • Segato F, Nozawa SR, Rossi A, Martinez-Rossi NM. Over-expression of genes coding for proline oxidase, ribofl avin kinase, cytochrome coxidase and an MFS transporter induced by acrifl avin in Trichophyton rubrum . Med Mycol 2008; 46 : 135-139. (Pubitemid 351372332)
    • (2008) Medical Mycology , vol.46 , Issue.2 , pp. 135-139
    • Segato, F.1    Nozawa, S.R.2    Rossi, A.3    Martinez-Rossi, N.M.4
  • 30
    • 74149084196 scopus 로고    scopus 로고
    • Transcriptional profi ling reveals genes in the human pathogen Trichophyton rubrum that are expressed in response to pH signaling
    • Silveira HCS, Gras DE, Cazzaniga RA, et al. Transcriptional profi ling reveals genes in the human pathogen Trichophyton rubrum that are expressed in response to pH signaling. Microb Pathog 2010; 48 : 91-96.
    • (2010) Microb. Pathog. , vol.48 , pp. 91-96
    • Silveira, H.C.S.1    Gras, D.E.2    Cazzaniga, R.A.3
  • 31
    • 33748180185 scopus 로고    scopus 로고
    • Development and evaluation of different normalization strategies for gene expression studies in Candida albicans biofi lms by real-time PCR
    • Nailis H, Coenye T, Van Nieuwerburgh F, Deforce D, Nelis HJ. Development and evaluation of different normalization strategies for gene expression studies in Candida albicans biofi lms by real-time PCR. BMC Mol Biol 2006; 7 : 25.
    • (2006) BMC Mol. Biol. , vol.7 , pp. 25
    • Nailis, H.1    Coenye, T.2    Van Nieuwerburgh, F.3    Deforce, D.4    Nelis, H.J.5
  • 32
    • 35748985566 scopus 로고    scopus 로고
    • Selection of reference genes for normalisation of specific gene quantification data of Aspergillus niger
    • DOI 10.1016/j.jbiotec.2007.08.005, PII S0168165607015039
    • Bohle K, Jungebloud A, Gocke Y, et al . Selection of reference genes for normalisation of specifi c gene quantifi cation data of Aspergillus niger . J Biotechnol 2007; 132 : 353-358. (Pubitemid 350051073)
    • (2007) Journal of Biotechnology , vol.132 , Issue.4 , pp. 353-358
    • Bohle, K.1    Jungebloud, A.2    Gocke, Y.3    Dalpiaz, A.4    Cordes, C.5    Horn, H.6    Hempel, D.C.7
  • 33
    • 70549086797 scopus 로고    scopus 로고
    • Validation of reference genes for quantitative expression analysis by real-time RT-PCR in Saccharomyces cerevisiae
    • Teste MA, Duquenne M, Francois JM, Parrou JL. Validation of reference genes for quantitative expression analysis by real-time RT-PCR in Saccharomyces cerevisiae . BMC Mol Biol 2009; 10 : 99.
    • (2009) BMC Mol. Biol. , vol.10 , pp. 99
    • Teste, M.A.1    Duquenne, M.2    Francois, J.M.3    Parrou, J.L.4
  • 34
    • 34249023638 scopus 로고    scopus 로고
    • Validation of zebrafish (Danio rerio) reference genes for quantitative real-time RT-PCR normalization
    • DOI 10.1111/j.1745-7270.2007.00283.x
    • Tang R, Dodd A, Lai D, McNabb WC, Love DR. Validation of zebrafi sh ( Danio rerio ) reference genes for quantitative real-time RT-PCR normalization. Acta Biochim Biophys Sin (Shanghai) 2007; 39 : 384-390. (Pubitemid 46792125)
    • (2007) Acta Biochimica et Biophysica Sinica , vol.39 , Issue.5 , pp. 384-390
    • Tang, R.1    Dodd, A.2    Lai, D.3    McNabb, W.C.4    Love, D.R.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.