메뉴 건너뛰기




Volumn 1, Issue 1, 2010, Pages

Selection and reliability of internal reference genes for quantitative PCR verification of transcriptomics during the differentiation process of porcine adult mesenchymal stem cells

Author keywords

[No Author keywords available]

Indexed keywords

ADIPOSE TISSUE; ADULT STEM CELL; ANIMAL CELL; ARTICLE; BONE MARROW; CELL CULTURE; CELL DIFFERENTIATION; CELL LINEAGE; COL1A1 GENE; DBI GENE; GENE; GENE EXPRESSION; IN VITRO STUDY; INTERNAL CONTROL GENE; MALE; MESENCHYMAL STEM CELL; NONHUMAN; NSUN5 GENE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; QUANTITATIVE ANALYSIS; RELIABILITY; SWINE; TIMM17B GENE; TRANSCRIPTOMICS; VPS4A GENE;

EID: 79952170543     PISSN: None     EISSN: 17576512     Source Type: Journal    
DOI: 10.1186/scrt7     Document Type: Article
Times cited : (25)

References (24)
  • 1
    • 33646103658 scopus 로고    scopus 로고
    • Fat tissue: An underappreciated source of stem cells for biotechnology
    • 10.1016/j.tibtech.2006.01.010. 16488036
    • Fat tissue: an underappreciated source of stem cells for biotechnology. Fraser JK Wulur I, Alfonso Z Hedrick MH, Trends Biotechnol 2006 24 4 150 154 10.1016/j.tibtech.2006.01.010 16488036
    • (2006) Trends Biotechnol , vol.24 , Issue.4 , pp. 150-154
    • Fraser, J.K.1    Wulur, I.2    Alfonso, Z.M.3    Hedrick, H.4
  • 3
    • 0037129827 scopus 로고    scopus 로고
    • Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
    • 10.1186/gb-2002-3-7-research0034. 12184808
    • Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Vandesompele J De Preter K Pattyn F Poppe B, Van Roy N De Paepe A, Speleman F,, Genome Biol 2002 3 ESEARCH0034 10.1186/gb-2002-3-7-research0034 12184808
    • (2002) Genome Biol , vol.3
    • Vandesompele, J.1    De Preter, K.2    Pattyn, F.3    Poppe, B.4    Van Roy, N.5    De Paepe, A.6    Speleman, F.7
  • 4
    • 0034720002 scopus 로고    scopus 로고
    • Comparison of human adult and fetal expression and identification of 535 housekeeping/maintenance genes
    • 11015593
    • Comparison of human adult and fetal expression and identification of 535 housekeeping/maintenance genes. Warrington JA Nair A, Mahadevappa M Tsyganskaya M, Physiol Genomics 2000 2 143 147 11015593
    • (2000) Physiol Genomics , vol.2 , pp. 143-147
    • Warrington, J.A.1    Nair, A.2    Mahadevappa, M.3    Tsyganskaya, M.4
  • 6
    • 0033836029 scopus 로고    scopus 로고
    • Control selection for RNA quantitation
    • 10948434
    • Control selection for RNA quantitation. Suzuki T Higgins PJ Crawford DR,, Biotechniques 2000 29 332 337 10948434
    • (2000) Biotechniques , vol.29 , pp. 332-337
    • Suzuki, T.P.1    Higgins, J.2    Crawford, D.R.3
  • 8
    • 15544376664 scopus 로고    scopus 로고
    • Plasticity of cultured mesenchymal stem cells: Switch from nestin-positive to excitable neuron-like phenotype
    • DOI 10.1634/stemcells.2004-0149
    • Plasticity of cultured mesenchymal stem cells: switch from nestin-positive to excitable neuron-like phenotype. Wislet-Gendebien S Hans G, Leprince P Rigo JM, Moonen G Rogister B, Stem Cells 2005 23 392 402 10.1634/stemcells.2004-0149 15749934 (Pubitemid 40404458)
    • (2005) Stem Cells , vol.23 , Issue.3 , pp. 392-402
    • Wislet-Gendebien, S.1    Hans, G.2    Leprince, P.3    Rigo, J.-M.4    Moonen, G.5    Rogister, B.6
  • 9
    • 34548462072 scopus 로고    scopus 로고
    • Unique and Independent Roles for MLL in Adult Hematopoietic Stem Cells and Progenitors
    • DOI 10.1016/j.stem.2007.05.019, PII S1934590907000604
    • Unique and independent roles for MLL in adult hematopoietic stem cells and progenitors. Jude CD Climer L, Xu D Artinger E, Fisher JK Ernst P, Cell Stem Cell 2007 1 324 337 10.1016/j.stem.2007.05.019 18371366 (Pubitemid 47355322)
    • (2007) Cell Stem Cell , vol.1 , Issue.3 , pp. 324-337
    • Jude, C.D.1    Climer, L.2    Xu, D.3    Artinger, E.4    Fisher, J.K.5    Ernst, P.6
  • 10
    • 79954508130 scopus 로고    scopus 로고
    • Temporal transcript profiling of porcine adult mesenchymal stem cells during osteogenic and adipogenic differentiation using a 13K porcine microarray
    • 322, 323
    • Temporal transcript profiling of porcine adult mesenchymal stem cells during osteogenic and adipogenic differentiation using a 13K porcine microarray. Monaco E Lima A Wilson S Kim D, Bionaz M Hurley WL, Wheeler MB,, ISSCR 6th Annual Meeting: Philadelphia 2008 322, 323
    • (2008) ISSCR 6th Annual Meeting: Philadelphia
    • Monaco, E.1    Lima, A.2    Wilson, S.3    Kim, D.4    Bionaz, M.W.5    Hurley, L.6    Wheeler, M.B.7
  • 11
    • 34347230863 scopus 로고    scopus 로고
    • Identification of reference genes for quantitative real-time PCR in the bovine mammary gland during the lactation cycle
    • DOI 10.1152/physiolgenomics.00223.2006
    • Identification of reference genes for quantitative real-time PCR in the bovine mammary gland during the lactation cycle. Bionaz M Loor JJ, Physiol Genomics 2007 29 312 319 10.1152/physiolgenomics.00223.2006 17284669 (Pubitemid 47173302)
    • (2007) Physiological Genomics , vol.29 , Issue.3 , pp. 312-319
    • Bionaz, M.1    Loor, J.J.2
  • 12
    • 49749118322 scopus 로고    scopus 로고
    • Internal controls for quantitative polymerase chain reaction of swine mammary glands during pregnancy and lactation
    • 10.3168/jds.2008-1164. 18650282
    • Internal controls for quantitative polymerase chain reaction of swine mammary glands during pregnancy and lactation. Tramontana S Bionaz M, Sharma A Graugnard DE, Cutler EA Ajmone-Marsan P, Hurley WL Loor JJ, J Dairy Sci 2008 91 3057 3066 10.3168/jds.2008-1164 18650282
    • (2008) J Dairy Sci , vol.91 , pp. 3057-3066
    • Tramontana, S.1    Bionaz, M.2    Sharma, A.D.3    Graugnard, E.4    Cutler, E.5    Ajmone-Marsan, A.P.6    Hurley, W.L.7    Loor, J.J.8
  • 13
    • 79953271759 scopus 로고    scopus 로고
    • Morphological and transcriptomics comparison of adipose and bone marrow derived porcine stem cells
    • 10.2174/1875043500902010020
    • Morphological and transcriptomics comparison of adipose and bone marrow derived porcine stem cells. Monaco E Lima A Bionaz M Maki A, Wilson S Hurley WL, Wheeler MB,, Open Tissue Eng Regen Med J 2009 2 20 33 10.2174/ 1875043500902010020
    • (2009) Open Tissue Eng Regen Med J , vol.2 , pp. 20-33
    • Monaco, E.1    Lima, A.2    Bionaz, M.3    Maki, A.4    Wilson, S.W.5    Hurley, L.6    Wheeler, M.B.7
  • 15
    • 44449138985 scopus 로고    scopus 로고
    • Gene expression ratio stability evaluation in prepubertal bovine mammary tissue from calves fed different milk replacers reveals novel internal controls for quantitative polymerase chain reaction
    • Gene expression ratio stability evaluation in prepubertal bovine mammary tissue from calves fed different milk replacers reveals novel internal controls for quantitative polymerase chain reaction. Piantoni P Bionaz M, Graugnard DE Daniels KM, Akers RM Loor JJ, J Nutr 2008 138 1158 1164 18492850 (Pubitemid 351769145)
    • (2008) Journal of Nutrition , vol.138 , Issue.6 , pp. 1158-1164
    • Piantoni, P.1    Bionaz, M.2    Graugnard, D.E.3    Daniels, K.M.4    Akers, R.M.5    Loor, J.J.6
  • 16
    • 33645808222 scopus 로고    scopus 로고
    • Large scale real-time PCR validation on gene expression measurements from two commercial long-oligonucleotide microarrays
    • 10.1186/1471-2164-7-59. 16551369
    • Large scale real-time PCR validation on gene expression measurements from two commercial long-oligonucleotide microarrays. Wang Y Barbacioru C, Hyland F Xiao W, Hunkapiller KL Blake J, Chan F Gonzalez C, Zhang L Samaha RR, BMC Genomics 2006 7 59 10.1186/1471-2164-7-59 16551369
    • (2006) BMC Genomics , vol.7 , pp. 59
    • Wang, Y.1    Barbacioru, C.2    Hyland, F.3    Xiao, W.4    Hunkapiller, K.L.5    Blake, J.6    Chan, F.7    Gonzalez, C.8    Zhang, L.R.9    Samaha, R.10
  • 17
    • 3442876969 scopus 로고    scopus 로고
    • Normalization of real-time quantitative reverse transcription-PCR data: A model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets
    • DOI 10.1158/0008-5472.CAN-04-0496
    • Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets. Andersen CL Jensen JL Orntoft TF,, Cancer Res 2004 64 5245 5250 10.1158/0008-5472.CAN-04-0496 15289330 (Pubitemid 39006544)
    • (2004) Cancer Research , vol.64 , Issue.15 , pp. 5245-5250
    • Andersen, C.L.1    Jensen, J.L.2    Orntoft, T.F.3
  • 18
    • 1842483281 scopus 로고    scopus 로고
    • Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper - Excel-based tool using pair-wise correlations
    • DOI 10.1023/B:BILE.0000019559.84305.47
    • Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper-Excel-based tool using pair-wise correlations. Pfaffl MW Tichopad A, Prgomet C Neuvians TP, Biotechnol Lett 2004 26 509 515 10.1023/B:BILE.0000019559.84305.47 15127793 (Pubitemid 38448421)
    • (2004) Biotechnology Letters , vol.26 , Issue.6 , pp. 509-515
    • Pfaffl, M.W.1    Tichopad, A.2    Prgomet, C.3    Neuvians, T.P.4
  • 19
    • 0035736207 scopus 로고    scopus 로고
    • Characterization of two novel genes, WBSCR20 and WBSCR22, deleted in Williams-Beuren syndrome
    • 10.1159/000057012. 11978965
    • Characterization of two novel genes, WBSCR20 and WBSCR22, deleted in Williams-Beuren syndrome. Doll A Grzeschik KH, Cytogenet Cell Genet 2001 95 20 27 10.1159/000057012 11978965
    • (2001) Cytogenet Cell Genet , vol.95 , pp. 20-27
    • Doll, A.K.1    Grzeschik, H.2
  • 21
    • 75649095637 scopus 로고    scopus 로고
    • Inactive X chromosome-specific histone H3 modifications and CpG hypomethylation flank a chromatin boundary between an X-inactivated and an escape gene
    • 10.1093/nar/gkp860. 19843608
    • Inactive X chromosome-specific histone H3 modifications and CpG hypomethylation flank a chromatin boundary between an X-inactivated and an escape gene. Goto Y Kimura H, Nucleic Acids Res 2009 37 22 7416 7428 10.1093/nar/gkp860 19843608
    • (2009) Nucleic Acids Res , vol.37 , Issue.22 , pp. 7416-7428
    • Goto, Y.1    Kimura, H.2
  • 22
    • 0032977613 scopus 로고    scopus 로고
    • Cloning, characterisation, and functional expression of the Mus musculus SKD1 gene in yeast demonstrates that the mouse SKD1 and the yeast VPS4 genes are orthologues and involved in intracellular protein trafficking
    • DOI 10.1016/S0378-1119(99)00163-8, PII S0378111999001638
    • Cloning, characterisation, and functional expression of the Mus musculus SKD1 gene in yeast demonstrates that the mouse SKD1 and the yeast VPS4 genes are orthologues and involved in intracellular protein trafficking. Scheuring S Bodor O, Rohricht RA Muller S, Beyer A Kohrer K, Gene 1999 234 1 149 159 10.1016/S0378-1119(99)00163-8 10393249 (Pubitemid 29294099)
    • (1999) Gene , vol.234 , Issue.1 , pp. 149-159
    • Scheuring, S.1    Bodor, O.2    Rohricht, R.A.3    Muller, S.4    Beyer, A.5    Kohrer, K.6
  • 23
    • 0036178995 scopus 로고    scopus 로고
    • Control genes and variability: Absence of ubiquitous reference transcripts in diverse mammalian expression studies
    • DOI 10.1101/gr.217802
    • Control genes and variability: absence of ubiquitous reference transcripts in diverse mammalian expression studies. Lee PD Sladek R, Greenwood CM Hudson TJ, Genome Res 2002 12 292 297 10.1101/gr.217802 11827948 (Pubitemid 34162995)
    • (2002) Genome Research , vol.12 , Issue.2 , pp. 292-297
    • Lee, P.D.1    Sladek, R.2    Greenwood, C.M.T.3    Hudson, T.J.4
  • 24
    • 0035988706 scopus 로고    scopus 로고
    • Differentiating embryonic stem cells: GAPDH, but neither HPRT nor β-tubulin is suitable as an internal standard for measuring RNA levels
    • DOI 10.1089/107632702760240472
    • Differentiating embryonic stem cells: GAPDH, but neither HPRT nor beta-tubulin is suitable as an internal standard for measuring RNA levels. Murphy CL Polak JM, Tissue Eng 2002 8 551 559 10.1089/107632702760240472 12201995 (Pubitemid 34857792)
    • (2002) Tissue Engineering , vol.8 , Issue.4 , pp. 551-559
    • Murphy, C.L.1    Polak, J.M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.