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Volumn 31, Issue 5, 2012, Pages 885-893

Analysis of copy-number variation, insertional polymorphism, and methylation status of the tiniest class I (TRIM) and class II (MITE) transposable element families in various rice strains

Author keywords

CNV; DNA methylation; MITE; Rice; Transposable elements; TRIM

Indexed keywords

PLANT DNA;

EID: 84859705344     PISSN: 07217714     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00299-011-1209-5     Document Type: Article
Times cited : (15)

References (35)
  • 1
    • 0027804103 scopus 로고
    • Nonparametric multivariate analyses of changes in community structure
    • Clarke KR (1993) Nonparametric multivariate analyses of changes in community structure. Aust J Ecol 18(1): 117-143.
    • (1993) Aust J Ecol , vol.18 , Issue.1 , pp. 117-143
    • Clarke, K.R.1
  • 2
    • 37549029474 scopus 로고    scopus 로고
    • DNA transposons and the evolution of eukaryotic genomes
    • Feschotte C, Pritham EJ (2007) DNA transposons and the evolution of eukaryotic genomes. Annu Rev Genet 41: 331-368.
    • (2007) Annu Rev Genet , vol.41 , pp. 331-368
    • Feschotte, C.1    Pritham, E.J.2
  • 3
    • 79952296705 scopus 로고    scopus 로고
    • The submergence tolerance regulator SUB1A mediates crosstalk between submergence and drought tolerance in rice
    • Fukao T, Bailey-Serres J, Yeung E (2011) The submergence tolerance regulator SUB1A mediates crosstalk between submergence and drought tolerance in rice. Plant Cell 23(1): 412-427.
    • (2011) Plant Cell , vol.23 , Issue.1 , pp. 412-427
    • Fukao, T.1    Bailey-Serres, J.2    Yeung, E.3
  • 5
    • 67649888842 scopus 로고    scopus 로고
    • TARGeT: a web-based pipeline for retrieving and characterizing gene and transposable element families from genomic sequences
    • Han Y, Burnette JM III, Wessler SR (2009) TARGeT: a web-based pipeline for retrieving and characterizing gene and transposable element families from genomic sequences. Nucleic Acids Res 37(11): e78.
    • (2009) Nucleic Acids Res , vol.37 , Issue.11
    • Han, Y.1    Burnette III, J.M.2    Wessler, S.R.3
  • 6
    • 2542577358 scopus 로고    scopus 로고
    • Genetics and epigenetics in flower pigmentation associated with transposable elements in morning glories
    • Iida S, Morita Y, Choi JD, Park KI, Hoshino A (2004) Genetics and epigenetics in flower pigmentation associated with transposable elements in morning glories. Adv Biophys 38: 141-159.
    • (2004) Adv Biophys , vol.38 , pp. 141-159
    • Iida, S.1    Morita, Y.2    Choi, J.D.3    Park, K.I.4    Hoshino, A.5
  • 8
    • 1542321148 scopus 로고    scopus 로고
    • Using rice to understand the origin and amplification of miniature inverted repeat transposable elements (MITEs)
    • Jiang N, Feschotte C, Zhang XY, Wessler SR (2004) Using rice to understand the origin and amplification of miniature inverted repeat transposable elements (MITEs). Curr Opin Plant Biol 7(2): 115-119.
    • (2004) Curr Opin Plant Biol , vol.7 , Issue.2 , pp. 115-119
    • Jiang, N.1    Feschotte, C.2    Zhang, X.Y.3    Wessler, S.R.4
  • 9
    • 37249012285 scopus 로고    scopus 로고
    • Large-scale survey of cytosine methylation of retrotransposons, and the impact of readout transcription from LTRs on expression of adjacent rice genes
    • Kashkush K, Khasdan V (2007) Large-scale survey of cytosine methylation of retrotransposons, and the impact of readout transcription from LTRs on expression of adjacent rice genes. Genetics 177: 1975-1985.
    • (2007) Genetics , vol.177 , pp. 1975-1985
    • Kashkush, K.1    Khasdan, V.2
  • 10
    • 0037226595 scopus 로고    scopus 로고
    • Transcriptional activation of retrotransposons alters the expression of adjacent genes in wheat
    • Kashkush K, Feldman M, Levy AA (2003) Transcriptional activation of retrotransposons alters the expression of adjacent genes in wheat. Nature Genet 33(1): 102-106.
    • (2003) Nature Genet , vol.33 , Issue.1 , pp. 102-106
    • Kashkush, K.1    Feldman, M.2    Levy, A.A.3
  • 11
    • 0346003772 scopus 로고    scopus 로고
    • The plant MITE mPing is mobilized in anther culture
    • Kikuchi K, Terauchi K, Wada M, Hirano HY (2003) The plant MITE mPing is mobilized in anther culture. Nature 421(6919): 167-170.
    • (2003) Nature , vol.421 , Issue.6919 , pp. 167-170
    • Kikuchi, K.1    Terauchi, K.2    Wada, M.3    Hirano, H.Y.4
  • 12
    • 38849143084 scopus 로고    scopus 로고
    • Rice transposable elements are characterized by various methylation environments in the genome
    • Kishima Y, Takata M, Kiyohara A, Takasu A, Ohtsubo H, Sano Y (2007) Rice transposable elements are characterized by various methylation environments in the genome. BMC Genomics 8: 469.
    • (2007) BMC Genomics , vol.8 , pp. 469
    • Kishima, Y.1    Takata, M.2    Kiyohara, A.3    Takasu, A.4    Ohtsubo, H.5    Sano, Y.6
  • 13
    • 78951489213 scopus 로고    scopus 로고
    • Genetic and epigenetic dynamics of a retrotransposon after allopolyploidization of wheat
    • Kraitshtein Z, Yaakov B, Khasdan V, Kashkush K (2010) Genetic and epigenetic dynamics of a retrotransposon after allopolyploidization of wheat. Genetics 186(3): 801-889.
    • (2010) Genetics , vol.186 , Issue.3 , pp. 801-889
    • Kraitshtein, Z.1    Yaakov, B.2    Khasdan, V.3    Kashkush, K.4
  • 15
    • 59849128363 scopus 로고    scopus 로고
    • The contribution of transposable elements to expressed coding sequence in Arabidopsis thaliana
    • Lockton S, Gaut BS (2009) The contribution of transposable elements to expressed coding sequence in Arabidopsis thaliana. J Mol Evol 68(1): 80-89.
    • (2009) J Mol Evol , vol.68 , Issue.1 , pp. 80-89
    • Lockton, S.1    Gaut, B.S.2
  • 16
    • 14744272333 scopus 로고    scopus 로고
    • The effect of stress on genome regulation and structure
    • Madlung A, Comai L (2004) The effect of stress on genome regulation and structure. Ann Bot London 94(4): 481-495.
    • (2004) Ann Bot London , vol.94 , Issue.4 , pp. 481-495
    • Madlung, A.1    Comai, L.2
  • 17
    • 0035837378 scopus 로고    scopus 로고
    • Mobilization of transposons by a mutation abolishing full DNA methylation in Arabidopsis
    • Miura A, Yonebayashi S, Watanabe K, Toyama T, Shimada H, Kakutani T (2001) Mobilization of transposons by a mutation abolishing full DNA methylation in Arabidopsis. Nature 411(6834): 212-214.
    • (2001) Nature , vol.411 , Issue.6834 , pp. 212-214
    • Miura, A.1    Yonebayashi, S.2    Watanabe, K.3    Toyama, T.4    Shimada, H.5    Kakutani, T.6
  • 21
    • 68349154098 scopus 로고    scopus 로고
    • Tissue culture-induced transpositional activity of mPing is correlated with cytosine methylation in rice
    • doi: 10. 1186/1471-2229-9-91
    • Ngezahayo F, Xu CM, Wang HY, Jiang LL, Pang JS, Liu B (2009) Tissue culture-induced transpositional activity of mPing is correlated with cytosine methylation in rice. BMC Plant Biol 9: 91. doi: 10. 1186/1471-2229-9-91.
    • (2009) BMC Plant Biol , vol.9 , Issue.91
    • Ngezahayo, F.1    Xu, C.M.2    Wang, H.Y.3    Jiang, L.L.4    Pang, J.S.5    Liu, B.6
  • 23
    • 27144543515 scopus 로고    scopus 로고
    • Updating of transposable element annotations from large wheat genomic sequences reveals diverse activities and gene associations
    • Sabot F, Guyot R, Wicker T, Chantret N, Laubin B, Chalhoub B, Leroy P, Sourdille P, Bernard M (2005) Updating of transposable element annotations from large wheat genomic sequences reveals diverse activities and gene associations. Mol Genet Gen 274(2): 119-130.
    • (2005) Mol Genet Gen , vol.274 , Issue.2 , pp. 119-130
    • Sabot, F.1    Guyot, R.2    Wicker, T.3    Chantret, N.4    Laubin, B.5    Chalhoub, B.6    Leroy, P.7    Sourdille, P.8    Bernard, M.9
  • 25
    • 16344382176 scopus 로고    scopus 로고
    • Mobilization of the active MITE transposons mPing and Pong in rice by introgression from wild rice (Zizania latifolia Griseb.)
    • Shan X, Liu Z, Dong Z, Wang Y, Chen Y, Lin X, Long L, Han F, Dong Y, Liu B (2005) Mobilization of the active MITE transposons mPing and Pong in rice by introgression from wild rice (Zizania latifolia Griseb.). Mol Biol Evol 22(4): 976-990.
    • (2005) Mol Biol Evol , vol.22 , Issue.4 , pp. 976-990
    • Shan, X.1    Liu, Z.2    Dong, Z.3    Wang, Y.4    Chen, Y.5    Lin, X.6    Long, L.7    Han, F.8    Dong, Y.9    Liu, B.10
  • 26
    • 0035282119 scopus 로고    scopus 로고
    • Robertson's Mutator transposons in A. thaliana are regulated by the chromatin-remodeling gene decrease in DNA methylation (DDM1)
    • Singer T, Yordan C, Martienssen RA (2001) Robertson's Mutator transposons in A. thaliana are regulated by the chromatin-remodeling gene decrease in DNA methylation (DDM1). Genes Dev 15(5): 591-602.
    • (2001) Genes Dev , vol.15 , Issue.5 , pp. 591-602
    • Singer, T.1    Yordan, C.2    Martienssen, R.A.3
  • 27
    • 33947303168 scopus 로고    scopus 로고
    • Transposable elements and the epigenetic regulation of the genome
    • Slotkin RK, Martienssen R (2007) Transposable elements and the epigenetic regulation of the genome. Nat Rev Genet 8(4): 272-285.
    • (2007) Nat Rev Genet , vol.8 , Issue.4 , pp. 272-285
    • Slotkin, R.K.1    Martienssen, R.2
  • 29
    • 0035923510 scopus 로고    scopus 로고
    • Terminal-repeat retrotransposons in miniature (TRIM) are involved in restructuring plant genomes
    • Witte CP, Le QH, Bureau T, Kumar A (2001) Terminal-repeat retrotransposons in miniature (TRIM) are involved in restructuring plant genomes. Proc Natl Acad Sci USA 98(24): 13778-13783.
    • (2001) Proc Natl Acad Sci USA , vol.98 , Issue.24 , pp. 13778-13783
    • Witte, C.P.1    Le, Q.H.2    Bureau, T.3    Kumar, A.4
  • 31
    • 0033005346 scopus 로고    scopus 로고
    • Patterns of cytosine methylation in an elite rice hybrid and its parental lines, detected by a methylation-sensitive amplification polymorphism technique
    • Xiong LZ, Xu CG, Maroof MAS, Zhang QF (1999) Patterns of cytosine methylation in an elite rice hybrid and its parental lines, detected by a methylation-sensitive amplification polymorphism technique. Mol Gen Genet 261(3): 439-446.
    • (1999) Mol Gen Genet , vol.261 , Issue.3 , pp. 439-446
    • Xiong, L.Z.1    Xu, C.G.2    Maroof, M.A.S.3    Zhang, Q.F.4
  • 32
    • 78651388093 scopus 로고    scopus 로고
    • Massive alterations of the methylation patterns around DNA transposons in the first four generations of a newly formed wheat allohexaploid
    • Yaakov B, Kashkush K (2011) Massive alterations of the methylation patterns around DNA transposons in the first four generations of a newly formed wheat allohexaploid. Genome 54(1): 42-49.
    • (2011) Genome , vol.54 , Issue.1 , pp. 42-49
    • Yaakov, B.1    Kashkush, K.2
  • 33
    • 70249087648 scopus 로고    scopus 로고
    • Tuned for transposition: molecular determinants underlying the hyperactivity of a Stowaway MITE
    • Yang GJ, Nagel DH, Feschotte C, Hancock CN, Wessler SR (2009) Tuned for transposition: molecular determinants underlying the hyperactivity of a Stowaway MITE. Science 325(5946): 1391-1394.
    • (2009) Science , vol.325 , Issue.5946 , pp. 1391-1394
    • Yang, G.J.1    Nagel, D.H.2    Feschotte, C.3    Hancock, C.N.4    Wessler, S.R.5
  • 34
    • 21244501403 scopus 로고    scopus 로고
    • Phylogenetic relationships among A-genome species of the genus Oryza revealed by intron sequences of four nuclear genes
    • (vol 167, pg 249, 2005)
    • Zhu Q, Ge S (2005) Phylogenetic relationships among A-genome species of the genus Oryza revealed by intron sequences of four nuclear genes. New Phytol 167 (2): 632-632 (vol 167, pg 249, 2005).
    • (2005) New Phytol , vol.167 , Issue.2 , pp. 632
    • Zhu, Q.1    Ge, S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.