-
1
-
-
0037342499
-
Alignment-free sequence comparison-a review
-
S. Vinga, J. Almeida, Alignment-free sequence comparison-a review, Bioinformatics 19 (2003)513-523.
-
(2003)
Bioinformatics
, vol.19
, pp. 513-523
-
-
Vinga, S.1
Almeida, J.2
-
2
-
-
0022428361
-
Novel DNA sequence representation
-
E. Hamori, Novel DNA sequence representation, Nature 314 (1985) 585.
-
(1985)
Nature
, vol.314
, pp. 585
-
-
Hamori, E.1
-
3
-
-
0022592245
-
A simple way to look at DNA
-
M. A. Gates, A simple way to look at DNA, J. Theor. Biol. 119 (1986) 319-328.
-
(1986)
J. Theor. Biol.
, vol.119
, pp. 319-328
-
-
Gates, M.A.1
-
4
-
-
0028889673
-
Random walk and gap plots of DNA sequences
-
P. M. Leong, S. Mogenthaler, Random walk and gap plots of DNA sequences, Comput. Appl. Biosci. 12 (1995) 503-511.
-
(1995)
Comput. Appl. Biosci.
, vol.12
, pp. 503-511
-
-
Leong, P.M.1
Mogenthaler, S.2
-
5
-
-
0011479281
-
Graphical analysis of DNA sequences structure: II. Relative abundances of nucleotides in DNAs, gene evolution and duplication
-
A. Nandy, P. Nandy, Graphical analysis of DNA sequences structure: II. Relative abundances of nucleotides in DNAs, gene evolution and duplication, Curr. Sci. 68 (1995) 75-85.
-
(1995)
Curr. Sci.
, vol.68
, pp. 75-85
-
-
Nandy, A.1
Nandy, P.2
-
6
-
-
2442500682
-
Highly compact 2D graphical representation of DNA sequences
-
DOI 10.1080/10629360410001697753
-
M. Randić, J. Zupan, Highly compact 2-D graphical representation of DNA sequences, SAR. QSAR. Environ. Res. 15 (2004) 191-205. (Pubitemid 38641778)
-
(2004)
SAR and QSAR in Environmental Research
, vol.15
, Issue.3
, pp. 191-205
-
-
Randic, M.1
Zupan, J.2
-
7
-
-
33845442924
-
Novel numerical and graphical representation of DNA sequences and proteins
-
DOI 10.1080/10629360601033549, PII R386024V6G35KV71
-
M. Randić, M. Novič, D. Vikić-Topić, D. Plavšić, Novel numerical and graphical representation of DNA sequences and proteins, SAR. QSAR. Environ. Res. 17 (2006) 583-595. (Pubitemid 44905393)
-
(2006)
SAR and QSAR in Environmental Research
, vol.17
, Issue.6
, pp. 583-595
-
-
Randic, M.1
Novic, M.2
Vikic-Topic, D.3
Plavsic, D.4
-
8
-
-
22544455386
-
Analysis of similarity/dissimilarity of DNA sequences based on a 3-D graphical representation
-
Y. H. Yao, X. Y. Nan, T. M. Wang, Analysis of similarity/dissimilarity of DNA sequences based on a 3-D graphical representation, Chem. Phys. Lett. 411 (2005) 248-255.
-
(2005)
Chem. Phys. Lett.
, vol.411
, pp. 248-255
-
-
Yao, Y.H.1
Nan, X.Y.2
Wang, T.M.3
-
9
-
-
0025340372
-
Chaos game representation of gene structure
-
H. J. Jeffrey, Chaos game representation of gene structure, Nucleic. Acids. Res. 18 (1990) 2163-2170.
-
(1990)
Nucleic. Acids. Res.
, vol.18
, pp. 2163-2170
-
-
Jeffrey, H.J.1
-
10
-
-
0037460960
-
The Z curve database: A graphic representation of genome sequences
-
DOI 10.1093/bioinformatics/btg041
-
C. T. Zhang, R Zhang, H. Y. Ou, The Z curve database: a graphic representation of genome sequences, Bioinformatics 19 (2003) 593-599. (Pubitemid 36417053)
-
(2003)
Bioinformatics
, vol.19
, Issue.5
, pp. 593-599
-
-
Zhang, C.-T.1
Zhang, R.2
Ou, H.-Y.3
-
11
-
-
0037901854
-
DNA sequence representation without degeneracy
-
DOI 10.1093/nar/gkg432
-
S. S. Yau, J. Wang, A. Niknejad, C. Lu, N. Jin, Y. K. Ho, DNA sequence representation without degeneracy, Nucleic Acids. Res. 31 (2003) 3078-3080. (Pubitemid 37441767)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.12
, pp. 3078-3080
-
-
Yau, S.S.-T.1
Wang, J.2
Niknejad, A.3
Lu, C.4
Jin, N.5
Ho, Y.-K.6
-
12
-
-
2442509138
-
2-D graphical representation of proteins based on virtual genetic code
-
DOI 10.1080/10629360410001697744
-
M. Randić, 2-D Graphical representation of proteins based on virtual genetic code, SAR. QSAR. Environ. Res. 15 (2004) 147-157. (Pubitemid 38641775)
-
(2004)
SAR and QSAR in Environmental Research
, vol.15
, Issue.3
, pp. 147-157
-
-
Randic, M.1
-
13
-
-
7444235858
-
Unique graphical representation of protein sequences based on nucleotide triplet codons
-
M. Randić, J. Zupan, A. T. Balaban, Unique graphical representation of protein sequences based on nucleotide triplet codons, Chem. Phys. Lett. 397 (2004) 247-252.
-
(2004)
Chem. Phys. Lett.
, vol.397
, pp. 247-252
-
-
Randić, M.1
Zupan, J.2
Balaban, A.T.3
-
14
-
-
32344433839
-
Novel 2-D graphical representation of proteins
-
DOI 10.1016/j.cplett.2005.11.091, PII S000926140501835X
-
M. Randić, D. Butina, J. Zupan, Novel 2-D graphical representation of proteins, Chem. Phys. Lett. 419 (2006) 528-532. (Pubitemid 43220524)
-
(2006)
Chemical Physics Letters
, vol.419
, Issue.4-6
, pp. 528-532
-
-
Randic, M.1
Butina, D.2
Zupan, J.3
-
15
-
-
30344479150
-
A novel graphical representstion of proteins
-
M. Randić, A. T. Balaban, M Novic, A Zaloznik, T Pisanski, A novel graphical representstion of proteins, Period. Biol. 107 (2005) 403-414.
-
(2005)
Period. Biol.
, vol.107
, pp. 403-414
-
-
Randić, M.1
Balaban, A.T.2
Novic, M.3
Zaloznik, A.4
Pisanski, T.5
-
16
-
-
34250857482
-
On representation of proteins by star-like graphs
-
DOI 10.1016/j.jmgm.2006.12.006, PII S1093326306001495
-
M. Randić, J. Zupan, D. Vikić-Topić, On representation of proteins by star-like graphs, J. Mol. Graph. Model. 26 (2007) 290-305. (Pubitemid 46977263)
-
(2007)
Journal of Molecular Graphics and Modelling
, vol.26
, Issue.1
, pp. 290-305
-
-
Randic, M.1
Zupan, J.2
Vikic-Topic, D.3
-
17
-
-
33645325372
-
On graphical and numerical representation of protein sequences
-
F. L. Bai, T. M. Wang, On graphical and numerical representation of protein sequences, J. Biomol. Str. Dyn. 23 (2006) 537-545.
-
(2006)
J. Biomol. Str. Dyn.
, vol.23
, pp. 537-545
-
-
Bai, F.L.1
Wang, T.M.2
-
18
-
-
33947596861
-
Novel method for analyzing proteome
-
DOI 10.1002/qua.21287
-
B. Liao, J. W. Luo, R. F. Li, W. Zhu, Novel method for analyzing proteome, Int. J. Quant. Chem. 107(2007) 1295-1300. (Pubitemid 46480199)
-
(2007)
International Journal of Quantum Chemistry
, vol.107
, Issue.6
, pp. 1295-1300
-
-
Liao, B.1
Luo, J.2
Li, R.3
Zhu, W.4
-
19
-
-
34248647897
-
2-D Graphical representation of proteins based on physico-chemical properties of amino acids
-
DOI 10.1016/j.cplett.2007.04.037, PII S000926140700485X
-
M. Randic, 2-D Graphical representation of proteins based on physico-chemical properties of amino acids, Chem. Phys. Lett. 440 (2007) 291-295. (Pubitemid 46770670)
-
(2007)
Chemical Physics Letters
, vol.440
, Issue.4-6
, pp. 291-295
-
-
Randic, M.1
-
20
-
-
58149316600
-
Analysis of similarity/dissimilarity of protein sequences
-
Y. H. Yao, Q. Dai, C. Li, P. A. He, X. Y. Nan, Y. Z. Zhang, Analysis of similarity/dissimilarity of protein sequences, Protein, 73 (2008) 864-871.
-
(2008)
Protein
, vol.73
, pp. 864-871
-
-
Yao, Y.H.1
Dai, Q.2
Li, C.3
He, P.A.4
Nan, X.Y.5
Zhang, Y.Z.6
-
21
-
-
52149106884
-
Characterization of protein primary sequences based on partial ordering
-
J. Feng, Y. M. Wang, Characterization of protein primary sequences based on partial ordering, J. Theoretical. Biol. 254 (2008) 752-755.
-
(2008)
J. Theoretical. Biol.
, vol.254
, pp. 752-755
-
-
Feng, J.1
Wang, Y.M.2
-
22
-
-
71849120074
-
A 2D graphical representation of protein sequence and its numerical characterization
-
J. Wen, Y. Y. Zhang, A 2D graphical representation of protein sequence and its numerical characterization, Chem. Phys. Lett. 476 (2009) 281-286.
-
(2009)
Chem. Phys. Lett.
, vol.476
, pp. 281-286
-
-
Wen, J.1
Zhang, Y.Y.2
-
23
-
-
60349115403
-
3-D maps and coupling numbers for protein sequences
-
C. Li, X. Q. Yu, L. Yang, X. Q. Zheng, Z. F. Wang, 3-D maps and coupling numbers for protein sequences, Physica A. 388 (2009) 1967-1972.
-
(2009)
Physica A.
, vol.388
, pp. 1967-1972
-
-
Li, C.1
Yu, X.Q.2
Yang, L.3
Zheng, X.Q.4
Wang, Z.F.5
-
24
-
-
47349096545
-
Representation of proteins as walks in 20-D space
-
DOI 10.1080/10629360802085066, PII 793153943
-
M. Novič, M. Randić, Representation of proteins as walks in 20-D space, SAR. QSAR. Environ. Res. 19 (2008) 317-337. (Pubitemid 351998858)
-
(2008)
SAR and QSAR in Environmental Research
, vol.19
, Issue.3-4
, pp. 317-337
-
-
Novic, M.1
Randic, M.2
-
25
-
-
47349126419
-
On novel representation of proteins based on amino acid adjacency matrix
-
DOI 10.1080/10629360802085082, PII 793152530
-
M. Randić, M. Novič, M. Vračko, On novel representation of proteins based on amino acid adjacency matrix, SAR. QSAR. Environ. Res. 19 (2008) 339-349. (Pubitemid 351998857)
-
(2008)
SAR and QSAR in Environmental Research
, vol.19
, Issue.3-4
, pp. 339-349
-
-
Randic, M.1
Novic, M.2
Vracko, M.3
-
26
-
-
33847676432
-
Numerical characterization and similarity analysis of neurocan gene
-
W. Zhu, B. Liao, J. W. Luo, R. F. Li, Numerical characterization and similarity analysis of neurocan gene, MATCH Commun. Math. Comput. Chem. 57 (2007) 143-155.
-
(2007)
MATCH Commun. Math. Comput. Chem.
, vol.57
, pp. 143-155
-
-
Zhu, W.1
Liao, B.2
Luo, J.W.3
Li, R.F.4
-
27
-
-
77954280483
-
The graphical representation of protein sequences based on the physicochemical properties and its applications
-
P. A. He, Y. P. Zhang, Y. H. Yao, Y. F. Tang, X. Y. Nan, The graphical representation of protein sequences based on the physicochemical properties and its applications, J Comput Chem. 31 (2010) 2136-2142.
-
(2010)
J Comput Chem.
, vol.31
, pp. 2136-2142
-
-
He, P.A.1
Zhang, Y.P.2
Yao, Y.H.3
Tang, Y.F.4
Nan, X.Y.5
-
28
-
-
37549004451
-
PseAAC. A flexible web-server for generating various kinds of protein pseudo amino acid composition
-
H. B. Shen, K. C. Chou, PseAAC. A flexible web-server for generating various kinds of protein pseudo amino acid composition, Analytical. Biochem. 373 (2008) 386-388.
-
(2008)
Analytical. Biochem.
, vol.373
, pp. 386-388
-
-
Shen, H.B.1
Chou, K.C.2
-
29
-
-
79959611480
-
A software for multiple sequence alignment of protein and nucleic acid sequence
-
C. Z. Guo, M. Q. Sun, Clustal W- A software for multiple sequence alignment of protein and nucleic acid sequence, Lett. Biotech. 11 (2000) 146-149.
-
(2000)
Lett. Biotech.
, vol.11
, pp. 146-149
-
-
Guo, C.Z.1
Sun, M.Q.2
Clustal, W.-.3
|