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Volumn 65, Issue 2, 2011, Pages 445-458

A novel descriptor for protein similarity analysis

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EID: 79959600901     PISSN: 03406253     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (27)

References (29)
  • 1
    • 0037342499 scopus 로고    scopus 로고
    • Alignment-free sequence comparison-a review
    • S. Vinga, J. Almeida, Alignment-free sequence comparison-a review, Bioinformatics 19 (2003)513-523.
    • (2003) Bioinformatics , vol.19 , pp. 513-523
    • Vinga, S.1    Almeida, J.2
  • 2
    • 0022428361 scopus 로고
    • Novel DNA sequence representation
    • E. Hamori, Novel DNA sequence representation, Nature 314 (1985) 585.
    • (1985) Nature , vol.314 , pp. 585
    • Hamori, E.1
  • 3
    • 0022592245 scopus 로고
    • A simple way to look at DNA
    • M. A. Gates, A simple way to look at DNA, J. Theor. Biol. 119 (1986) 319-328.
    • (1986) J. Theor. Biol. , vol.119 , pp. 319-328
    • Gates, M.A.1
  • 4
    • 0028889673 scopus 로고
    • Random walk and gap plots of DNA sequences
    • P. M. Leong, S. Mogenthaler, Random walk and gap plots of DNA sequences, Comput. Appl. Biosci. 12 (1995) 503-511.
    • (1995) Comput. Appl. Biosci. , vol.12 , pp. 503-511
    • Leong, P.M.1    Mogenthaler, S.2
  • 5
    • 0011479281 scopus 로고
    • Graphical analysis of DNA sequences structure: II. Relative abundances of nucleotides in DNAs, gene evolution and duplication
    • A. Nandy, P. Nandy, Graphical analysis of DNA sequences structure: II. Relative abundances of nucleotides in DNAs, gene evolution and duplication, Curr. Sci. 68 (1995) 75-85.
    • (1995) Curr. Sci. , vol.68 , pp. 75-85
    • Nandy, A.1    Nandy, P.2
  • 6
    • 2442500682 scopus 로고    scopus 로고
    • Highly compact 2D graphical representation of DNA sequences
    • DOI 10.1080/10629360410001697753
    • M. Randić, J. Zupan, Highly compact 2-D graphical representation of DNA sequences, SAR. QSAR. Environ. Res. 15 (2004) 191-205. (Pubitemid 38641778)
    • (2004) SAR and QSAR in Environmental Research , vol.15 , Issue.3 , pp. 191-205
    • Randic, M.1    Zupan, J.2
  • 7
    • 33845442924 scopus 로고    scopus 로고
    • Novel numerical and graphical representation of DNA sequences and proteins
    • DOI 10.1080/10629360601033549, PII R386024V6G35KV71
    • M. Randić, M. Novič, D. Vikić-Topić, D. Plavšić, Novel numerical and graphical representation of DNA sequences and proteins, SAR. QSAR. Environ. Res. 17 (2006) 583-595. (Pubitemid 44905393)
    • (2006) SAR and QSAR in Environmental Research , vol.17 , Issue.6 , pp. 583-595
    • Randic, M.1    Novic, M.2    Vikic-Topic, D.3    Plavsic, D.4
  • 8
    • 22544455386 scopus 로고    scopus 로고
    • Analysis of similarity/dissimilarity of DNA sequences based on a 3-D graphical representation
    • Y. H. Yao, X. Y. Nan, T. M. Wang, Analysis of similarity/dissimilarity of DNA sequences based on a 3-D graphical representation, Chem. Phys. Lett. 411 (2005) 248-255.
    • (2005) Chem. Phys. Lett. , vol.411 , pp. 248-255
    • Yao, Y.H.1    Nan, X.Y.2    Wang, T.M.3
  • 9
    • 0025340372 scopus 로고
    • Chaos game representation of gene structure
    • H. J. Jeffrey, Chaos game representation of gene structure, Nucleic. Acids. Res. 18 (1990) 2163-2170.
    • (1990) Nucleic. Acids. Res. , vol.18 , pp. 2163-2170
    • Jeffrey, H.J.1
  • 10
    • 0037460960 scopus 로고    scopus 로고
    • The Z curve database: A graphic representation of genome sequences
    • DOI 10.1093/bioinformatics/btg041
    • C. T. Zhang, R Zhang, H. Y. Ou, The Z curve database: a graphic representation of genome sequences, Bioinformatics 19 (2003) 593-599. (Pubitemid 36417053)
    • (2003) Bioinformatics , vol.19 , Issue.5 , pp. 593-599
    • Zhang, C.-T.1    Zhang, R.2    Ou, H.-Y.3
  • 12
    • 2442509138 scopus 로고    scopus 로고
    • 2-D graphical representation of proteins based on virtual genetic code
    • DOI 10.1080/10629360410001697744
    • M. Randić, 2-D Graphical representation of proteins based on virtual genetic code, SAR. QSAR. Environ. Res. 15 (2004) 147-157. (Pubitemid 38641775)
    • (2004) SAR and QSAR in Environmental Research , vol.15 , Issue.3 , pp. 147-157
    • Randic, M.1
  • 13
    • 7444235858 scopus 로고    scopus 로고
    • Unique graphical representation of protein sequences based on nucleotide triplet codons
    • M. Randić, J. Zupan, A. T. Balaban, Unique graphical representation of protein sequences based on nucleotide triplet codons, Chem. Phys. Lett. 397 (2004) 247-252.
    • (2004) Chem. Phys. Lett. , vol.397 , pp. 247-252
    • Randić, M.1    Zupan, J.2    Balaban, A.T.3
  • 14
    • 32344433839 scopus 로고    scopus 로고
    • Novel 2-D graphical representation of proteins
    • DOI 10.1016/j.cplett.2005.11.091, PII S000926140501835X
    • M. Randić, D. Butina, J. Zupan, Novel 2-D graphical representation of proteins, Chem. Phys. Lett. 419 (2006) 528-532. (Pubitemid 43220524)
    • (2006) Chemical Physics Letters , vol.419 , Issue.4-6 , pp. 528-532
    • Randic, M.1    Butina, D.2    Zupan, J.3
  • 16
    • 34250857482 scopus 로고    scopus 로고
    • On representation of proteins by star-like graphs
    • DOI 10.1016/j.jmgm.2006.12.006, PII S1093326306001495
    • M. Randić, J. Zupan, D. Vikić-Topić, On representation of proteins by star-like graphs, J. Mol. Graph. Model. 26 (2007) 290-305. (Pubitemid 46977263)
    • (2007) Journal of Molecular Graphics and Modelling , vol.26 , Issue.1 , pp. 290-305
    • Randic, M.1    Zupan, J.2    Vikic-Topic, D.3
  • 17
    • 33645325372 scopus 로고    scopus 로고
    • On graphical and numerical representation of protein sequences
    • F. L. Bai, T. M. Wang, On graphical and numerical representation of protein sequences, J. Biomol. Str. Dyn. 23 (2006) 537-545.
    • (2006) J. Biomol. Str. Dyn. , vol.23 , pp. 537-545
    • Bai, F.L.1    Wang, T.M.2
  • 19
    • 34248647897 scopus 로고    scopus 로고
    • 2-D Graphical representation of proteins based on physico-chemical properties of amino acids
    • DOI 10.1016/j.cplett.2007.04.037, PII S000926140700485X
    • M. Randic, 2-D Graphical representation of proteins based on physico-chemical properties of amino acids, Chem. Phys. Lett. 440 (2007) 291-295. (Pubitemid 46770670)
    • (2007) Chemical Physics Letters , vol.440 , Issue.4-6 , pp. 291-295
    • Randic, M.1
  • 20
    • 58149316600 scopus 로고    scopus 로고
    • Analysis of similarity/dissimilarity of protein sequences
    • Y. H. Yao, Q. Dai, C. Li, P. A. He, X. Y. Nan, Y. Z. Zhang, Analysis of similarity/dissimilarity of protein sequences, Protein, 73 (2008) 864-871.
    • (2008) Protein , vol.73 , pp. 864-871
    • Yao, Y.H.1    Dai, Q.2    Li, C.3    He, P.A.4    Nan, X.Y.5    Zhang, Y.Z.6
  • 21
    • 52149106884 scopus 로고    scopus 로고
    • Characterization of protein primary sequences based on partial ordering
    • J. Feng, Y. M. Wang, Characterization of protein primary sequences based on partial ordering, J. Theoretical. Biol. 254 (2008) 752-755.
    • (2008) J. Theoretical. Biol. , vol.254 , pp. 752-755
    • Feng, J.1    Wang, Y.M.2
  • 22
    • 71849120074 scopus 로고    scopus 로고
    • A 2D graphical representation of protein sequence and its numerical characterization
    • J. Wen, Y. Y. Zhang, A 2D graphical representation of protein sequence and its numerical characterization, Chem. Phys. Lett. 476 (2009) 281-286.
    • (2009) Chem. Phys. Lett. , vol.476 , pp. 281-286
    • Wen, J.1    Zhang, Y.Y.2
  • 23
    • 60349115403 scopus 로고    scopus 로고
    • 3-D maps and coupling numbers for protein sequences
    • C. Li, X. Q. Yu, L. Yang, X. Q. Zheng, Z. F. Wang, 3-D maps and coupling numbers for protein sequences, Physica A. 388 (2009) 1967-1972.
    • (2009) Physica A. , vol.388 , pp. 1967-1972
    • Li, C.1    Yu, X.Q.2    Yang, L.3    Zheng, X.Q.4    Wang, Z.F.5
  • 24
    • 47349096545 scopus 로고    scopus 로고
    • Representation of proteins as walks in 20-D space
    • DOI 10.1080/10629360802085066, PII 793153943
    • M. Novič, M. Randić, Representation of proteins as walks in 20-D space, SAR. QSAR. Environ. Res. 19 (2008) 317-337. (Pubitemid 351998858)
    • (2008) SAR and QSAR in Environmental Research , vol.19 , Issue.3-4 , pp. 317-337
    • Novic, M.1    Randic, M.2
  • 25
    • 47349126419 scopus 로고    scopus 로고
    • On novel representation of proteins based on amino acid adjacency matrix
    • DOI 10.1080/10629360802085082, PII 793152530
    • M. Randić, M. Novič, M. Vračko, On novel representation of proteins based on amino acid adjacency matrix, SAR. QSAR. Environ. Res. 19 (2008) 339-349. (Pubitemid 351998857)
    • (2008) SAR and QSAR in Environmental Research , vol.19 , Issue.3-4 , pp. 339-349
    • Randic, M.1    Novic, M.2    Vracko, M.3
  • 26
    • 33847676432 scopus 로고    scopus 로고
    • Numerical characterization and similarity analysis of neurocan gene
    • W. Zhu, B. Liao, J. W. Luo, R. F. Li, Numerical characterization and similarity analysis of neurocan gene, MATCH Commun. Math. Comput. Chem. 57 (2007) 143-155.
    • (2007) MATCH Commun. Math. Comput. Chem. , vol.57 , pp. 143-155
    • Zhu, W.1    Liao, B.2    Luo, J.W.3    Li, R.F.4
  • 27
    • 77954280483 scopus 로고    scopus 로고
    • The graphical representation of protein sequences based on the physicochemical properties and its applications
    • P. A. He, Y. P. Zhang, Y. H. Yao, Y. F. Tang, X. Y. Nan, The graphical representation of protein sequences based on the physicochemical properties and its applications, J Comput Chem. 31 (2010) 2136-2142.
    • (2010) J Comput Chem. , vol.31 , pp. 2136-2142
    • He, P.A.1    Zhang, Y.P.2    Yao, Y.H.3    Tang, Y.F.4    Nan, X.Y.5
  • 28
    • 37549004451 scopus 로고    scopus 로고
    • PseAAC. A flexible web-server for generating various kinds of protein pseudo amino acid composition
    • H. B. Shen, K. C. Chou, PseAAC. A flexible web-server for generating various kinds of protein pseudo amino acid composition, Analytical. Biochem. 373 (2008) 386-388.
    • (2008) Analytical. Biochem. , vol.373 , pp. 386-388
    • Shen, H.B.1    Chou, K.C.2
  • 29
    • 79959611480 scopus 로고    scopus 로고
    • A software for multiple sequence alignment of protein and nucleic acid sequence
    • C. Z. Guo, M. Q. Sun, Clustal W- A software for multiple sequence alignment of protein and nucleic acid sequence, Lett. Biotech. 11 (2000) 146-149.
    • (2000) Lett. Biotech. , vol.11 , pp. 146-149
    • Guo, C.Z.1    Sun, M.Q.2    Clustal, W.-.3


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