-
1
-
-
0020659327
-
H curves, a novel method of representation of nucleotide series especially suited for long DNA sequences
-
E. Hamori and J.J. Ruskin, H curves, a novel method of representation of nucleotide series especially suited for long DNA sequences, J. Biol. Chem. 258 (1983), pp. 1318-1327.
-
(1983)
J. Biol. Chem.
, vol.258
, pp. 1318-1327
-
-
Hamori, E.1
Ruskin, J.J.2
-
2
-
-
0024340861
-
Graphical representation of long DNA sequences by methods of H curves, current results and future aspects
-
E. Hamori, Graphical representation of long DNA sequences by methods of H curves, current results and future aspects, BioTechniques 7 (1989), pp. 710-720.
-
(1989)
BioTechniques
, vol.7
, pp. 710-720
-
-
Hamori, E.1
-
3
-
-
84916514701
-
Novel DNA sequence representations
-
E. Hamori, Novel DNA sequence representations, Nature 314 (1985), pp. 585-586.
-
(1985)
Nature
, vol.314
, pp. 585-586
-
-
Hamori, E.1
-
4
-
-
0014757386
-
A general method applicable to search for similarities in ammo acid sequence of 2 proteins
-
S. Needleman and C.D. Wunsch, A general method applicable to search for similarities in ammo acid sequence of 2 proteins, J. Mol. Biol. 48 (1970), pp. 443-453.
-
(1970)
J. Mol. Biol.
, vol.48
, pp. 443-453
-
-
Needleman, S.1
Wunsch, C.D.2
-
5
-
-
0019887799
-
Identification of common molecular subsequences
-
T.F. Smith and M.S. Waterman, Identification of common molecular subsequences, J. Mol. Biol. 147(1981), pp. 195-197.
-
(1981)
J. Mol. Biol.
, vol.147
, pp. 195-197
-
-
Smith, T.F.1
Waterman, M.S.2
-
6
-
-
0023989064
-
Improved tools for biological sequence comparison
-
W.R. Pearson and D.J. Lipman, Improved tools for biological sequence comparison, Proc. Natl. Acad. Sci. 85 (1988), pp. 2444-2448.
-
(1988)
Proc. Natl. Acad. Sci.
, vol.85
, pp. 2444-2448
-
-
Pearson, W.R.1
Lipman, D.J.2
-
7
-
-
0022592245
-
A simple way to look at DNA
-
M.A. Gates, A simple way to look at DNA, J. Theor. Biol. 119 (1986), pp. 319-328.
-
(1986)
J. Theor. Biol.
, vol.119
, pp. 319-328
-
-
Gates, M.A.1
-
8
-
-
0022428479
-
A simpler DNA sequence representations
-
M.A. Gates, A simpler DNA sequence representations, Nature 316 (1985), pp. 219-219.
-
(1985)
Nature
, vol.316
, pp. 219-219
-
-
Gates, M.A.1
-
9
-
-
0000347441
-
A new graphical representation and analysis of DNA sequence structure: I. Methodology and application to globin genes
-
A. Nandy, A new graphical representation and analysis of DNA sequence structure: I. Methodology and application to globin genes, Curr. Sci. 66 (1994), pp. 309-314.
-
(1994)
Curr. Sci.
, vol.66
, pp. 309-314
-
-
Nandy, A.1
-
10
-
-
0029912285
-
Two-dimensional graphical representation of DNA sequences and intron-exon discrimination in intron-rich sequences
-
A. Nandy, Two-dimensional graphical representation of DNA sequences and intron-exon discrimination in intron-rich sequences, CABIOS (Comput. Appl. Biosci.) 12 (1996), pp. 55-62.
-
(1996)
CABIOS (Comput. Appl. Biosci.)
, vol.12
, pp. 55-62
-
-
Nandy, A.1
-
11
-
-
0031953432
-
Novel techniques of graphical representation and analysis of DNA sequences-A review
-
A. Roy, C. Raychaudhury, and A. Nandy, Novel techniques of graphical representation and analysis of DNA sequences-A review, J. Biosci. 23 (1998), pp. 55-71.
-
(1998)
J. Biosci.
, vol.23
, pp. 55-71
-
-
Roy, A.1
Raychaudhury, C.2
Nandy, A.3
-
12
-
-
1542636606
-
Graphical analysis of DNA sequence structure: III. Indication of evolutionary distinctions and characteristics of introns and exons
-
A. Nandy, Graphical analysis of DNA sequence structure: III. Indication of evolutionary distinctions and characteristics of introns and exons, Curr. Sci. 70 (1996), pp. 661-668.
-
(1996)
Curr. Sci.
, vol.70
, pp. 661-668
-
-
Nandy, A.1
-
13
-
-
33749518282
-
Mathematical descriptors of DNA sequences: Development and applications
-
A. Nandy, M. Harle, and S.C. Basak, Mathematical descriptors of DNA sequences: Development and applications, ARKIVOC 9 (2006), pp. 211-238.
-
(2006)
ARKIVOC
, vol.9
, pp. 211-238
-
-
Nandy, A.1
Harle, M.2
Basak, S.C.3
-
14
-
-
0028889673
-
Random walk and gap plots of DNA sequences
-
P.M. Leong and S. Morgenthaler, Random walk and gap plots of DNA sequences, Comput. Appl. Biosci. 11 (1995), pp. 503-507.
-
(1995)
Comput. Appl. Biosci.
, vol.11
, pp. 503-507
-
-
Leong, P.M.1
Morgenthaler, S.2
-
15
-
-
0025340372
-
Chaos game representation of gene structure
-
H.J. Jeffrey, Chaos game representation of gene structure, Nucleic Acid Res.18(1990), pp. 2163-2170.
-
(1990)
Nucleic Acid Res.
, vol.18
, pp. 2163-2170
-
-
Jeffrey, H.J.1
-
17
-
-
0004227619
-
-
2nd ed., Academic Press, Boston, MA
-
M.F. Barnsley and H. Rising, Fractals Everywhere, 2nd ed., Academic Press, Boston, MA, 1993.
-
(1993)
Fractals Everywhere
-
-
Barnsley, M.F.1
Rising, H.2
-
18
-
-
0034266159
-
On 3-D graphical representation of DNA primary sequence and their numerical characterization
-
M. Randic, M. Vracko, A. Nandy, and S.C. Basak, On 3-D graphical representation of DNA primary sequence and their numerical characterization, J. Chem. Inf. Comput. Sci. 40 (2000), pp. 1235-1244.
-
(2000)
J. Chem. Inf. Comput. Sci.
, vol.40
, pp. 1235-1244
-
-
Randic, M.1
Vracko, M.2
Nandy, A.3
Basak, S.C.4
-
19
-
-
7444235858
-
Unique graphical representation of protein sequences Based on nucleotide triplet codons
-
M. Randic, J. Zupan, and A.T. Balaban, Unique graphical representation of protein sequences Based on nucleotide triplet codons, Chem. Phys. Lett. 397 (2004), pp. 247-252.
-
(2004)
Chem. Phys. Lett.
, vol.397
, pp. 247-252
-
-
Randic, M.1
Zupan, J.2
Balaban, A.T.3
-
20
-
-
30344479150
-
A novel graphical representation of proteins
-
M. Randic, A.T. Balaban, M. Novic, A. Zaloznik, and T. Pisanski, A novel graphical representation of proteins, Period. Biol. 107 (2005), pp. 403-414.
-
(2005)
Period. Biol.
, vol.107
, pp. 403-414
-
-
Randic, M.1
Balaban, A.T.2
Novic, M.3
Zaloznik, A.4
Pisanski, T.5
-
21
-
-
32344433839
-
Novel 2-D graphical representation of proteins
-
M. Randic, D. Butina, and J. Zupan, Novel 2-D graphical representation of proteins, Chem. Phys. Lett. 419 (2006), pp. 528-532.
-
(2006)
Chem. Phys. Lett.
, vol.419
, pp. 528-532
-
-
Randic, M.1
Butina, D.2
Zupan, J.3
-
22
-
-
33845442924
-
Novel numerical and graphical representation of DNA sequences and proteins
-
M. Randic, M. Novic, D. Vikic-Topic, and D. Plavsic, Novel numerical and graphical representation of DNA sequences and proteins, SAR QSAR Environ. Res.17(2006), pp. 583-595.
-
(2006)
SAR QSAR Environ. Res.
, vol.17
, pp. 583-595
-
-
Randic, M.1
Novic, M.2
Vikic-Topic, D.3
Plavsic, D.4
-
23
-
-
34547596547
-
2-D graphical representation of proteins based on physico-chemical properties of amino acids
-
M. Randic, 2-D graphical representation of proteins based on physico-chemical properties of amino acids, Chem. Phys. Lett. 444 (2007), pp. 176-180.
-
(2007)
Chem. Phys. Lett.
, vol.444
, pp. 176-180
-
-
Randic, M.1
-
24
-
-
34250857482
-
On representation of proteins by star-like graphs
-
M. Randic, J. Zupan, and D. Vikic-Topic, On representation of proteins by star-like graphs, J. Mol. Graphics Model. 26 (2007), pp. 290-305.
-
(2007)
J. Mol. Graphics Model
, vol.26
, pp. 290-305
-
-
Randic, M.1
Zupan, J.2
Vikic-Topic, D.3
-
25
-
-
47349096545
-
Representation of proteins as walks in 20-D space
-
M. Novic and M. Randic, Representation of proteins as walks in 20-D space, SAR QSAR Environ. Res. 19 (2008), pp. 317-337.
-
(2008)
SAR QSAR Environ. Res.
, vol.19
, pp. 317-337
-
-
Novic, M.1
Randic, M.2
-
26
-
-
0024750637
-
A lattice statistical mechanics model of the conformational and sequences spaces of proteins
-
K.F. Lau and K.A. Dill, A lattice statistical mechanics model of the conformational and sequences spaces of proteins, Macromolecules 22 (1989), pp. 3986-3997.
-
(1989)
Macromolecules
, vol.22
, pp. 3986-3997
-
-
Lau, K.F.1
Dill, K.A.2
-
27
-
-
5244273418
-
Compact polymers
-
H.S. Chan and K.A. Dill, Compact polymers, Macromolecules 22 (1989), pp. 3986-3997.
-
(1989)
Macromolecules
, vol.22
, pp. 3986-3997
-
-
Chan, H.S.1
Dill, K.A.2
-
28
-
-
0030723486
-
As simple as can be
-
P.G. Wolynes, As simple as can be, Nat. Struct. Biol. 4 (1997), pp. 871-874.
-
(1997)
Nat. Struct. Biol.
, vol.4
, pp. 871-874
-
-
Wolynes, P.G.1
-
29
-
-
7044220745
-
Nature of driving force for protein folding - A result from analyzing statistical potential
-
H. Li, C. Tang, and N. Wingreen, Nature of driving force for protein folding - A result from analyzing statistical potential, Phys. Rev. Lett. 79 (1997), pp. 765-768.
-
(1997)
Phys. Rev. Lett.
, vol.79
, pp. 765-768
-
-
Li, H.1
Tang, C.2
Wingreen, N.3
-
30
-
-
0029772552
-
Emergence of preferred structures in a simple model of protein folding
-
H. Li, R. Helling, C. Tang, and N.S. Wingreen, Emergence of preferred structures in a simple model of protein folding, Science 273 (1996), pp. 666-669.
-
(1996)
Science
, vol.273
, pp. 666-669
-
-
Li, H.1
Helling, R.2
Tang, C.3
Wingreen, N.S.4
-
31
-
-
0000399469
-
Viscosity dependence of folding rates of protein
-
D.K. Klimov and D. Thirumalai, Viscosity dependence of folding rates of protein, Phys. Rev. Lett. 76 (1997), pp. 317-320.
-
(1997)
Phys. Rev. Lett.
, vol.76
, pp. 317-320
-
-
Klimov, D.K.1
Thirumalai, D.2
-
32
-
-
0023812695
-
Characterization of a helical protein designed from first principles
-
L. Regan and W.F. Degrade, Characterization of a helical protein designed from first principles, Science 241 (1988), pp. 976-978.
-
(1988)
Science
, vol.241
, pp. 976-978
-
-
Regan, L.1
Degrade, W.F.2
-
33
-
-
23444436172
-
Protein design by binary patterning of polar and nonpolar ammo acids
-
S. Kamtekar, J.M. Schiffer, H. Xiong, J.M. Babik, and M.H. Hecht, Protein design by binary patterning of polar and nonpolar ammo acids, Science 262 (1993), pp. 1680-1685.
-
(1993)
Science
, vol.262
, pp. 1680-1685
-
-
Kamtekar, S.1
Schiffer, J.M.2
Xiong, H.3
Babik, J.M.4
Hecht, M.H.5
-
34
-
-
0030852463
-
Functional rapidly folding proteins from simplified ammo acid sequences
-
D.S. Riddle, J.V. Santiago, S.T. BrayHall, N. Doshi, V.P. Grantcharova, Q. Yi, and D. Baker, Functional rapidly folding proteins from simplified ammo acid sequences, Nature Struct. Biol. 4 (1997), pp. 805-809.
-
(1997)
Nature Struct. Biol.
, vol.4
, pp. 805-809
-
-
Riddle, D.S.1
Santiago, J.V.2
Brayhall, S.T.3
Doshi, N.4
Grantcharova, V.P.5
Yi, Q.6
Baker, D.7
-
35
-
-
0001338954
-
Simplified amino acid alphabets for protein fold recognition and implications in folding
-
L.R. Murphy, A. Wallqvist, and R.M. Levy, Simplified amino acid alphabets for protein fold recognition and implications in folding, Protein Engineering 13 (2000), pp. 149-152.
-
(2000)
Protein Engineering
, vol.13
, pp. 149-152
-
-
Murphy, L.R.1
Wallqvist, A.2
Levy, R.M.3
-
37
-
-
84987578063
-
A One-letter notation for amino acid sequences
-
IUPAC-IUB Commission on Biochemical Nomenclature (CBN)
-
IUPAC-IUB Commission on Biochemical Nomenclature (CBN), A One-letter notation for amino acid sequences, Arch. Biochem. Biophys. 125 (1968), pp. i-v.
-
(1968)
Arch. Biochem. Biophys
, vol.125
-
-
-
38
-
-
0034195180
-
Modeling study on the validity of a possibly simplified representation of proteins
-
J. Wang and W. Wang, Modeling study on the validity of a possibly simplified representation of proteins, Phys. Rev. E 61 (2000), pp. 6981-6986.
-
(2000)
Phys. Rev. E
, vol.61
, pp. 6981-6986
-
-
Wang, J.1
Wang, W.2
-
39
-
-
42049104155
-
2-D graphical representation of protein sequences and its application to coronavirus phylogeny
-
C. Li, L. Xing, and X. Wang, 2-D graphical representation of protein sequences and its application to coronavirus phylogeny, J. Biochem. Mol. Biol. 41 (2008), pp. 217-222.
-
(2008)
J. Biochem. Mol. Biol.
, vol.41
, pp. 217-222
-
-
Li, C.1
Xing, L.2
Wang, X.3
-
40
-
-
0037435485
-
Novel 2-D graphical representation of DNA sequences and their numerical characterization
-
M. Randic, M. Vracko, N. Lers, and D. Plavsic, Novel 2-D graphical representation of DNA sequences and their numerical characterization, Chem. Phys. Lett. 368 (2003), pp. 1-6.
-
(2003)
Chem. Phys. Lett.
, vol.368
, pp. 1-6
-
-
Randic, M.1
Vracko, M.2
Lers, N.3
Plavsic, D.4
-
41
-
-
0037470662
-
Analysis of similarity/dissimilarity of DNA sequences based on novel2-D graphical representation
-
M. Randic, M. Vracko, N. Lers, and D. Plavsic, Analysis of similarity/dissimilarity of DNA sequences based on novel2-D graphical representation, Chem. Phys. Lett.371(2003), pp. 202-207.
-
(2003)
Chem. Phys. Lett.
, vol.371
-
-
Randic, M.1
Vracko, M.2
Lers, N.3
Plavsic, D.4
-
42
-
-
33750622753
-
A novel unexpected use of a graphical representation of DNA: Graphical alignment of DNA sequence
-
M. Randic, J. Zupan, D. Vikic-Topic, and D. Plavsic, A novel unexpected use of a graphical representation of DNA: Graphical alignment of DNA sequence, Chem. Phys. Lett. 431 (2006), pp. 375-579.
-
(2006)
Chem. Phys. Lett.
, vol.431
, pp. 375-579
-
-
Randic, M.1
Zupan, J.2
Vikic-Topic, D.3
Plavsic, D.4
-
43
-
-
18344389019
-
Algorithm for coding DNA sequences into "spectrum-like" and "zigzag" representations
-
J. Zupan and M. Randic, Algorithm for coding DNA sequences into "spectrum-like" and "zigzag" representations, J. Chem. Inf. Model. 45 (2005), pp. 309-313.
-
(2005)
J. Chem. Inf. Model
, vol.45
, pp. 309-313
-
-
Zupan, J.1
Randic, M.2
-
44
-
-
30344431779
-
Novel 1-dimensional representations of DNA
-
M. Randic, Novel 1-dimensional representations of DNA, Period. Biol. 107 (2005), pp. 415-422.
-
(2005)
Period. Biol.
, vol.107
, pp. 415-422
-
-
Randic, M.1
-
45
-
-
33846325883
-
Spectrum-like graphical representation of DNA based on codons
-
M. Randic, Spectrum-like graphical representation of DNA based on codons, Acta Chim. Slovenica 53 (2006), pp. 477-485.
-
(2006)
Acta Chim. Slovenica
, vol.53
, pp. 477-485
-
-
Randic, M.1
|