Minimalist probes for studying protein dynamics: Thioamide quenching of selectively excitable fluorescent amino acids

Journal of the American Chemical Society

Volumn 134, Issue 14, 2012, Pages 6088-6091

  Goldberg, Jacob M ^a   Speight, Lee C ^a   Fegley, Mark W ^a   Petersson, E James ^a  

^a UNIVERSITY OF PENNSYLVANIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACRIDONES; CONFORMATIONAL CHANGE; ELECTRON TRANSFER MECHANISMS; FLUORESCENCE LIFETIME MEASUREMENTS; FLUORESCENT PROBES; INTRINSIC PROTEIN FLUORESCENCE; MODEL PEPTIDE SYSTEM; NATURAL AMINO ACIDS; PROOF-OF-PRINCIPLE EXPERIMENTS; PROTEIN DYNAMICS; PROTEIN SEQUENCES; RED-SHIFTED; SECONDARY AND TERTIARY STRUCTURES; SINGLE ATOMS; THIOAMIDES; VILLIN HEADPIECE;

AMINO ACIDS; FLUORESCENCE; FLUOROPHORES; PROBES; PROTEIN FOLDING; QUENCHING;

PROTEINS;

ACRIDONE DERIVATIVE; AMINO ACID; FLUORESCENT DYE; THIOAMIDE; VILLIN;

AMINO ACID SEQUENCE; ARTICLE; CHEMICAL BOND; CONTROLLED STUDY; ELECTRON TRANSPORT; FLUORESCENCE; FLUORESCENCE ANALYSIS; MOLECULAR PROBE; PHOTOCHEMICAL QUENCHING; PROTEIN FOLDING; PROTEIN FUNCTION; PROTEIN UNFOLDING;

ACRIDINES; AMINO ACIDS; FLUORESCENT DYES; MODELS, MOLECULAR; MOLECULAR CONFORMATION; OLIGONUCLEOTIDE PROBES; PEPTIDES; PROTEIN CONFORMATION; PROTEIN DENATURATION; PROTEIN FOLDING; PROTEIN STRUCTURE, SECONDARY; PROTEIN STRUCTURE, TERTIARY; PROTEINS; SPECTROMETRY, FLUORESCENCE; THIOAMIDES; TRYPTOPHAN; TYROSINE;

EID: 84859582343     PISSN: 00027863     EISSN: 15205126     Source Type: Journal    
DOI: 10.1021/ja3005094     Document Type: Article

References (36)

1. Giepmans, B. N. G.; Adams, S. R.; Ellisman, M. H.; Tsien, R. Y. Science 2006, 312, 217
2. Royer, C. A. Chem. Rev. 2006, 106, 1769
3. Ross, J. B.; Szabo, A. G.; Hogue, C. W. V. Methods Enzymol. 1997, 278, 151
4. Selvin, P. R. Nat. Struct. Biol. 2000, 7, 730
5. Weiss, S. Nat. Struct. Biol. 2000, 7, 724
6. Goldberg, J. M.; Batjargal, S.; Petersson, E. J. J. Am. Chem. Soc. 2010, 132, 14718
7. Goldberg, J. M.; Wissner, R. F.; Klein, A. M.; Petersson, E. J. Chem. Commun. 2012, 48, 1550
8. Speiser, S. Chem. Rev. 1996, 96, 1953
9. Budisa, N.; Pal, P. P. Biol. Chem. 2004, 385, 893
10. Hamada, H.; Kameshima, N.; Szymanska, A.; Wegner, K.; Lankiewicz, L.; Shinohara, H.; Taki, M.; Sisido, M. Bioorg. Med. Chem. 2005, 13, 3379
11. Taki, M.; Yamazaki, Y.; Suzuki, Y.; Sisido, M. Chem. Lett. 2010, 39, 818
12. Katritzky, A. R.; Narindoshvili, T. Org. Biomol. Chem. 2009, 7, 627
13. Wang, J. Y.; Xie, J. M.; Schultz, P. G. J. Am. Chem. Soc. 2006, 128, 8738
14. Doose, S.; Neuweiler, H.; Barsch, H.; Sauer, M. Proc. Natl. Acad. Sci. U.S.A. 2007, 104, 17400
15. Szymanska, A.; Wegner, K.; Lankiewicz, L. Helv. Chim. Acta 2003, 86, 3326
16. Lotte, K.; Plessow, R.; Brockhinke, A. Photochem. Photobiol. Sci. 2004, 3, 348
17. Brun, M. P.; Bischoff, L.; Garbay, C. Angew. Chem., Int. Ed. 2004, 43, 3432
18. Lakowicz, J. R. Principles of fluorescence spectroscopy; Springer: Berlin, 2006.
19. Doose, S.; Neuweiler, H.; Sauer, M. ChemPhysChem 2009, 10, 1389
20. Bordwell, F. G.; Algrim, D. J.; Harrelson, J. A. J. Am. Chem. Soc. 1988, 110, 5903
21. Rehm, D.; Weller, A. Isr. J. Chem. 1970, 8, 259
22. Seidel, C. A. M.; Schulz, A.; Sauer, M. H. M. J. Phys. Chem. 1996, 100, 5541
23. Mukherjee, M.; Karmakar, S.; Chakraborty, T. J. Phys. Chem. A 2011, 115, 1830
24. McKnight, C. J.; Doering, D. S.; Matsudaira, P. T.; Kim, P. S. J. Mol. Biol. 1996, 260, 126
25. Cellmer, T.; Buscaglia, M.; Henry, E. R.; Hofrichter, J.; Eaton, W. A. Proc. Natl. Acad. Sci. U.S.A. 2011, 108, 6103
26. McKnight, C. J.; Matsudaira, P. T.; Kim, P. S. Nat. Struct. Biol. 1997, 4, 180
27. Tucker, M. J.; Oyola, R.; Gai, F. Biopolymers 2006, 83, 571
28. Brewer, S. H.; Song, B. B.; Raleigh, D. P.; Dyer, R. B. Biochemistry 2007, 46, 3279
29. Glasscock, J. M.; Zhu, Y. J.; Chowdhury, P.; Tang, J.; Gai, F. Biochemistry 2008, 47, 11070
30. Zhu, L.; Ghosh, K.; King, M.; Cellmer, T.; Bakajin, O.; Lapidus, L. J. J. Phys. Chem. B 2011, 115, 12632
31. Beauchamp, K. A.; Ensign, D. L.; Das, R.; Pande, V. S. Proc. Natl. Acad. Sci. U.S.A. 2011, 108, 12734
32. Reiner, A.; Henklein, P.; Kiefhaber, T. Proc. Natl. Acad. Sci. U. S. A. 2010, 107, 4955
33. Chen, H.; Ahsan, S. S.; Santiago-Berrios, M. E. B.; Abruna, H. D.; Webb, W. W. J. Am. Chem. Soc. 2010, 132, 7244
34. Chen, Y.; Barkley, M. D. Biochemistry 1998, 37, 9976
35. Mansoor, S. E.; DeWitt, M. A.; Farrens, D. L. Biochemistry 2011, 49, 9722
36. Batjargal, S. B.; Wang, Y. J.; Goldberg, J. M.; Wissner, R. F.; Petersson, E. J. J. Am. Chem. Soc. 2012, 134, DOI: 10.1021/ja2113245.