-
1
-
-
0027131947
-
Fast events in protein folding initiated by nanosecond laser photolysis
-
DOI 10.1073/pnas.90.24.11860
-
Jones CM, et al. (1993) Fast events in protein folding initiated by nanosecond laser photolysis. Proc Natl Acad Sci USA 90:11860-11864. (Pubitemid 24008739)
-
(1993)
Proceedings of the National Academy of Sciences of the United States of America
, vol.90
, Issue.24
, pp. 11860-11864
-
-
Jones, C.M.1
Henry, E.R.2
Hu, Y.3
Chan, C.-K.4
Luck, S.D.5
Bhuyan, A.6
Roder, H.7
Hofrichter, J.8
Eaton, W.A.9
-
2
-
-
0029151158
-
Submillisecond folding of monomeric lambda repressor
-
Huang GS, Oas TG (1995) Submillisecond folding of monomeric lambda repressor. Proc Natl Acad Sci USA 92:6878-6882.
-
(1995)
Proc Natl Acad Sci USA
, vol.92
, pp. 6878-6882
-
-
Huang, G.S.1
Oas, T.G.2
-
5
-
-
0030046906
-
Fast events in protein folding: Helix melting and formation in a small peptide
-
DOI 10.1021/bi952217p
-
Williams S, et al. (1996) Fast events in protein folding: Helix melting and formation in a small peptide. Biochemistry 35:691-697. (Pubitemid 26034553)
-
(1996)
Biochemistry
, vol.35
, Issue.3
, pp. 691-697
-
-
Williams, S.1
Causgrove, T.P.2
Gilmanshin, R.3
Fang, K.S.4
Callender, R.H.5
Woodruff, W.H.6
Dyer, R.B.7
-
6
-
-
0001261542
-
A single-sweep, nanosecond time resolution laser temperature-jump apparatus
-
Ballew RM, Sabelko J, Reiner C, Gruebele M (1996) A single-sweep, nanosecond time resolution laser temperature-jump apparatus. Rev Sci Instrum 67:3694-3699. (Pubitemid 126569398)
-
(1996)
Review of Scientific Instruments
, vol.67
, Issue.10
, pp. 3694-3699
-
-
Ballew, R.M.1
Sabelko, J.2
Reiner, C.3
Gruebele, M.4
-
7
-
-
0030789351
-
Laser temperature jump study of the helix⇆coil kinetics of an alanine peptide interpreted with a 'kinetic zipper' model
-
DOI 10.1021/bi9704764
-
Thompson PA, Eaton WA, Hofrichter J (1997) Laser temperature jump study of the helix reversible arrow coil kinetics of an alanine peptide interpreted with a "kinetic zipper" model. Biochemistry 36:9200-9210. (Pubitemid 27329505)
-
(1997)
Biochemistry
, vol.36
, Issue.30
, pp. 9200-9210
-
-
Thompson, P.A.1
Eaton, W.A.2
Hofrichter, J.3
-
8
-
-
0031047914
-
Submillisecond protein folding kinetics studied by ultrarapid mixing
-
Chan CK, et al. (1997) Submillisecond protein folding kinetics studied by ultrarapid mixing. Proc Natl Acad Sci USA 94:1779-1784.
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 1779-1784
-
-
Chan, C.K.1
-
9
-
-
0343632363
-
Submillisecond kinetics of protein folding
-
DOI 10.1016/S0959-440X(97)80003-6
-
Eaton WA, Munoz V, Thompson PA, Chan CK, Hofrichter J (1997) Submillisecond kinetics of protein folding. Curr Opin Struct Biol 7:10-14. (Pubitemid 27092375)
-
(1997)
Current Opinion in Structural Biology
, vol.7
, Issue.1
, pp. 10-14
-
-
Eaton, W.A.1
Munoz, V.2
Thompson, P.A.3
Chan, C.-K.4
Hofrichter, J.5
-
12
-
-
0033624685
-
Fast kinetics and mechanism in protein folding
-
DOI 10.1146/annurev.biophys.29.1.327
-
Eaton WA, et al. (2000) Fast kinetics and mechanisms in protein folding. Annu Rev Biophys Biomol Struct 29:327-359. (Pubitemid 30599597)
-
(2000)
Annual Review of Biophysics and Biomolecular Structure
, vol.29
, pp. 327-359
-
-
Eaton, W.A.1
Munoz, V.2
Hagen, S.J.3
Jas, G.S.4
Lapidus, L.J.5
Henry, E.R.6
Hofrichter, J.7
-
15
-
-
33846917230
-
Ultrafast and downhill protein folding
-
DOI 10.1016/j.sbi.2007.01.001, PII S0959440X07000024, Foldinf and Binding / Protein-Nucleic Interactions
-
Dyer RB (2007) Ultrafast and downhill protein folding. Curr Opin Struct Biol 17:38-47. (Pubitemid 46240812)
-
(2007)
Current Opinion in Structural Biology
, vol.17
, Issue.1
, pp. 38-47
-
-
Dyer, R.B.1
-
16
-
-
0032568537
-
A statistical mechanical model for β-hairpin kinetics
-
DOI 10.1073/pnas.95.11.5872
-
Munoz V, Henry ER, Hofrichter J, Eaton WA (1998) A statistical mechanical model for beta-hairpin kinetics. Proc Natl Acad Sci USA 95:5872-5879. (Pubitemid 28248933)
-
(1998)
Proceedings of the National Academy of Sciences of the United States of America
, vol.95
, Issue.11
, pp. 5872-5879
-
-
Munoz, V.1
Henry, E.R.2
Hofrichter, J.3
Eaton, W.A.4
-
18
-
-
8644232696
-
Combinatorial modeling of protein folding kinetics: Free energy profiles and rates
-
Henry ER, Eaton WA (2004) Combinatorial modeling of protein folding kinetics: Free energy profiles and rates. Chem Phys 307:163-185.
-
(2004)
Chem Phys
, vol.307
, pp. 163-185
-
-
Henry, E.R.1
Eaton, W.A.2
-
19
-
-
57449106823
-
Chemical, physical, and theoretical kinetics of an ultrafast folding protein
-
Kubelka J, Henry ER, Cellmer T, Hofrichter J, Eaton WA (2008) Chemical, physical, and theoretical kinetics of an ultrafast folding protein. Proc Natl Acad Sci USA 105:18655-18662.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 18655-18662
-
-
Kubelka, J.1
Henry, E.R.2
Cellmer, T.3
Hofrichter, J.4
Eaton, W.A.5
-
21
-
-
19344367964
-
Overview of molecular dynamics techniques and early scientific results from the Blue Gene project
-
Suits F, Pitman MC, Pitera JW, Swope WC, Germain RS (2005) Overview of molecular dynamics techniques and early scientific results from the Blue Gene project. IBM J Res Dev 49:475-487. (Pubitemid 40718148)
-
(2005)
IBM Journal of Research and Development
, vol.49
, Issue.2-3
, pp. 475-487
-
-
Suits, F.1
Pitman, M.C.2
Pitera, J.W.3
Swope, W.C.4
Germain, R.S.5
-
22
-
-
46249090563
-
Anton, a special-purpose machine for molecular dynamics simulation
-
Shaw DE, et al. (2008) Anton, a special-purpose machine for molecular dynamics simulation. Commun ACM 51:91-97.
-
(2008)
Commun. ACM.
, vol.51
, pp. 91-97
-
-
Shaw, D.E.1
-
23
-
-
19644381706
-
High-resolution x-ray crystal structures of the villin headpiece subdomain, an ultrafast folding protein
-
DOI 10.1073/pnas.0502495102
-
Chiu TK, et al. (2005) High-resolution X-ray crystal structures of the villin headpiece subdomain, an ultrafast folding protein. Proc Natl Acad Sci USA 102:7517-7522. (Pubitemid 40741003)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.21
, pp. 7517-7522
-
-
Chiu, T.K.1
Kubelka, J.2
Herbst-Irmer, R.3
Eaton, W.A.4
Hofrichter, J.5
Davies, D.R.6
-
24
-
-
33646759974
-
Submicrosecond protein folding
-
Kubelka J, Chiu TK, Davies DR, Eaton WA, Hofrichter J (2006) Submicrosecond protein folding. J Mol Biol 359:546-553.
-
(2006)
J Mol Biol
, vol.359
, pp. 546-553
-
-
Kubelka, J.1
Chiu, T.K.2
Davies, D.R.3
Eaton, W.A.4
Hofrichter, J.5
-
25
-
-
34250802058
-
Rational design, structural and thermodynamic characterization of a hyperstable variant of the villin headpiece helical subdomain
-
DOI 10.1021/bi6026314
-
Bi Y, et al. (2007) Rational design, structural and thermodynamic characterization of a hyperstable variant of the villin headpiece helical subdomain. Biochemistry 46:7497-7505. (Pubitemid 46986376)
-
(2007)
Biochemistry
, vol.46
, Issue.25
, pp. 7497-7505
-
-
Bi, Y.1
Cho, J.-H.2
Kim, E.-Y.3
Shan, B.4
Schindelin, H.5
Raleigh, D.P.6
-
26
-
-
0038054301
-
Experimental tests of villin subdomain folding simulations
-
DOI 10.1016/S0022-2836(03)00519-9
-
Kubelka J, Eaton WA, Hofrichter J (2003) Experimental tests of villin subdomain folding simulations. J Mol Biol 329:625-630. (Pubitemid 36629358)
-
(2003)
Journal of Molecular Biology
, vol.329
, Issue.4
, pp. 625-630
-
-
Kubelka, J.1
Eaton, W.A.2
Hofrichter, J.3
-
27
-
-
35648943228
-
Heterogeneity Even at the Speed Limit of Folding: Large-scale Molecular Dynamics Study of a Fast-folding Variant of the Villin Headpiece
-
DOI 10.1016/j.jmb.2007.09.069, PII S0022283607012685
-
Ensign DL, Kasson PM, Pande VS (2007) Heterogeneity even at the speed limit of folding: Large-scale molecular dynamics study of a fast-folding variant of the villin headpiece. J Mol Biol 374:806-816. (Pubitemid 350019606)
-
(2007)
Journal of Molecular Biology
, vol.374
, Issue.3
, pp. 806-816
-
-
Ensign, D.L.1
Kasson, P.M.2
Pande, V.S.3
-
28
-
-
54849428346
-
The fast-folding HP35 double mutant has a substantially reduced primary folding free energy barrier
-
Lei HX, Deng XJ, Wang ZX, Duan Y (2008) The fast-folding HP35 double mutant has a substantially reduced primary folding free energy barrier. J Chem Phys 129:155104.
-
(2008)
J Chem Phys
, vol.129
, pp. 155104
-
-
Lei, H.X.1
Deng, X.J.2
Wang, Z.X.3
Duan, Y.4
-
29
-
-
70349631761
-
Progress and challenges in the automated construction of Markov state models for full protein systems
-
Bowman GR, Beauchamp KA, Boxer G, Pande VS (2009) Progress and challenges in the automated construction of Markov state models for full protein systems. J Chem Phys 131:124101.
-
(2009)
J Chem Phys
, vol.131
, pp. 124101
-
-
Bowman, G.R.1
Beauchamp, K.A.2
Boxer, G.3
Pande, V.S.4
-
30
-
-
70349778502
-
Common structural transitions in explicit-solvent simulations of villin headpiece folding
-
Freddolino PL, Schulten K (2009) Common structural transitions in explicit-solvent simulations of villin headpiece folding. Biophys J 97:2338-2347.
-
(2009)
Biophys J.
, vol.97
, pp. 2338-2347
-
-
Freddolino, P.L.1
Schulten, K.2
-
31
-
-
40049106475
-
Fluorescence resonance energy transfer analysis of the folding pathway of Engrailed Homeodomain
-
DOI 10.1093/protein/gzm069
-
Huang F, Settanni G, Fersht AR (2008) Fluorescence resonance energy transfer analysis of the folding pathway of engrailed homeodomain. Protein Eng, Des Sel 21:131-146. (Pubitemid 351323350)
-
(2008)
Protein Engineering, Design and Selection
, vol.21
, Issue.3
, pp. 131-146
-
-
Huang, F.1
Settanni, G.2
Fersht, A.R.3
-
32
-
-
0037456298
-
The complete folding pathway of a protein from nanoseconds to microseconds
-
DOI 10.1038/nature01428
-
Mayor U, et al. (2003) The complete folding pathway of a protein from nanoseconds to microseconds. Nature 421:863-867. (Pubitemid 36254147)
-
(2003)
Nature
, vol.421
, Issue.6925
, pp. 863-867
-
-
Mayor, U.1
Guydosh, N.R.2
Johnson, C.M.3
Gunter Grossmann, J.4
Sato, S.5
Jas, G.S.6
Freund, S.M.V.7
Alonso, D.O.V.8
Daggett, V.9
Fersht, A.R.10
-
33
-
-
0028866475
-
Phosphorescence lifetime of tryptophan in proteins
-
Gonnelli M, Strambini GB (1995) Phosphorescence lifetime of tryptophan in proteins. Biochemistry 34:13847-13857.
-
(1995)
Biochemistry
, vol.34
, pp. 13847-13857
-
-
Gonnelli, M.1
Strambini, G.B.2
-
34
-
-
0037038514
-
Effects of chain stiffness on the dynamics of loop formation in polypeptides. Appendix: Testing a 1-dimensional diffusion model for peptide dynamics
-
DOI 10.1021/jp020829v
-
Lapidus LJ, Steinbach PJ, Eaton WA, Szabo A, Hofrichter J (2002) Effects of chain stiffness on the dynamics of loop formation in polypeptides. Appendix: Testing a 1-dimensional diffusion model for peptide dynamics. J Phys Chem B 106:11628-11640. (Pubitemid 35361136)
-
(2002)
Journal of Physical Chemistry B
, vol.106
, Issue.44
, pp. 11628-11640
-
-
Lapidus, L.J.1
Steinbach, P.J.2
Eaton, W.A.3
Szabo, A.4
Hofrichter, J.5
-
35
-
-
0036304892
-
Measuring dynamic flexibility of the coil state of a helix-forming peptide
-
DOI 10.1016/S0022-2836(02)00193-6
-
Lapidus LJ, Eaton WA, Hofrichter J (2002) Measuring dynamic flexibility of the coil state of a helix-forming peptide. J Mol Biol 319:19-25. (Pubitemid 34729483)
-
(2002)
Journal of Molecular Biology
, vol.319
, Issue.1
, pp. 19-25
-
-
Lapidus, L.J.1
Eaton, W.A.2
Hofrichter, J.3
-
36
-
-
0041735179
-
Kinetics of intramolecular contact formation in a denatured protein
-
DOI 10.1016/S0022-2836(03)00891-X
-
Buscaglia M, Schuler B, Lapidus LJ, Eaton WA, Hofrichter J (2003) Kinetics of intramolecular contact formation in a denatured protein. J Mol Biol 332:9-12. (Pubitemid 36999726)
-
(2003)
Journal of Molecular Biology
, vol.332
, Issue.1
, pp. 9-12
-
-
Buscaglia, M.1
Schuler, B.2
Lapidus, L.J.3
Eaton, W.A.4
Hofrichter, J.5
-
37
-
-
33646796290
-
Effects of denaturants on the dynamics of loop formation in polypeptides
-
DOI 10.1529/biophysj.105.071167
-
Buscaglia M, Lapidus LJ, Eaton WA, Hofrichter J (2006) Effects of denaturants on the dynamics of loop formation in polypeptides. Biophys J 91:276-288. (Pubitemid 44018055)
-
(2006)
Biophysical Journal
, vol.91
, Issue.1
, pp. 276-288
-
-
Buscaglia, M.1
Lapidus, L.J.2
Eaton, W.A.3
Hofrichter, J.4
-
38
-
-
14744302714
-
Determination of ultrafast protein folding rates from loop formation dynamics
-
DOI 10.1016/j.jmb.2005.01.057
-
Buscaglia M, Kubelka J, Eaton WA, Hofrichter J (2005) Determination of ultrafast protein folding rates from loop formation dynamics. J Mol Biol 347:657-664. (Pubitemid 40332371)
-
(2005)
Journal of Molecular Biology
, vol.347
, Issue.3
, pp. 657-664
-
-
Buscaglia, M.1
Kubelka, J.2
Eaton, W.A.3
Hofrichter, J.4
-
39
-
-
67650550291
-
Probing the folding transition state structure of the villin headpiece subdomain via side chain and backbone mutagenesis
-
Bunagan MR, Gao JM, Kelly JW, Gai F (2009) Probing the folding transition state structure of the villin headpiece subdomain via side chain and backbone mutagenesis. J Am Chem Soc 131:7470-7476.
-
(2009)
J Am Chem Soc
, vol.131
, pp. 7470-7476
-
-
Bunagan, M.R.1
Gao, J.M.2
Kelly, J.W.3
Gai, F.4
-
40
-
-
0038288925
-
Dynamic NMR line-shape analysis demonstrates that the villin headpiece subdomain folds on the microsecond timescale
-
Wang MH, et al. (2003) Dynamic NMR line-shape analysis demonstrates that the villin headpiece subdomain folds on the microsecond timescale. J Am Chem Soc 20:6032-6033.
-
(2003)
J Am Chem Soc
, vol.20
, pp. 6032-6033
-
-
Wang, M.H.1
-
41
-
-
59049097904
-
Local conformational dynamics in alpha-helices measured by fast triplet transfer
-
Fierz B, Reiner A, Kiefhaber T (2009) Local conformational dynamics in alpha-helices measured by fast triplet transfer. Proc Natl Acad Sci USA 106:1057-1062.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 1057-1062
-
-
Fierz, B.1
Reiner, A.2
Kiefhaber, T.3
-
42
-
-
77950388103
-
An unlocking/relocking barrier in conformational fluctuations of villin headpiece subdomain
-
Reiner A, Henklein P, Kiefhaber T (2010) An unlocking/relocking barrier in conformational fluctuations of villin headpiece subdomain. Proc Natl Acad Sci USA 107:4955-4960.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 4955-4960
-
-
Reiner, A.1
Henklein, P.2
Kiefhaber, T.3
-
43
-
-
44949236102
-
Estimating free energy barrier heights for an ultrafast folding protein from calorimetric and kinetic data
-
Godoy-Ruiz R, et al. (2008) Estimating free energy barrier heights for an ultrafast folding protein from calorimetric and kinetic data. J Phys Chem B 112:5938-5949.
-
(2008)
J Phys Chem B
, vol.112
, pp. 5938-5949
-
-
Godoy-Ruiz, R.1
-
44
-
-
0028947257
-
Funnels, pathways, and the energy landscape of protein-folding-A synthesis
-
Bryngelson JD, Onuchic JN, Socci ND, Wolynes PG (1995) Funnels, pathways, and the energy landscape of protein-folding-a synthesis. Proteins: Struct Funct Genet 21:167-195.
-
(1995)
Proteins: Struct Funct Genet
, vol.21
, pp. 167-195
-
-
Bryngelson, J.D.1
Onuchic, J.N.2
Socci, N.D.3
Wolynes, P.G.4
-
45
-
-
60349085890
-
A one-dimensional free energy surface does not account for two-probe folding kinetics of protein alpha D-3
-
Liu F, et al. (2009) A one-dimensional free energy surface does not account for two-probe folding kinetics of protein alpha D-3. J Chem Phys 130:061101.
-
(2009)
J Chem Phys
, vol.130
, pp. 061101
-
-
Liu, F.1
-
48
-
-
36749012371
-
Relaxation rate for an ultrafast folding protein is independent of chemical denaturant concentration
-
DOI 10.1021/ja0761939
-
Cellmer T, Henry ER, Kubelka J, Hofrichter J, Eaton WA (2007) Relaxation rate for an ultrafast folding protein is independent of chemical denaturant concentration. J Am Chem Soc 129:14564-14565. (Pubitemid 350207863)
-
(2007)
Journal of the American Chemical Society
, vol.129
, Issue.47
, pp. 14564-14565
-
-
Cellmer, T.1
Henry, E.R.2
Kubelka, J.3
Hofrichter, J.4
Eaton, W.A.5
-
49
-
-
2342442964
-
Quantitative prediction of fluorescence quantum yields for tryptophan in proteins
-
Callis PR, Liu TQ (2004) Quantitative prediction of fluorescence quantum yields for tryptophan in proteins. J Phys Chem B 108:4248-4259.
-
(2004)
J Phys Chem B
, vol.108
, pp. 4248-4259
-
-
Callis, P.R.1
Liu, T.Q.2
-
50
-
-
34548846644
-
Ab initio prediction of tryptophan fluorescence quenching by protein electric field enabled electron transfer
-
DOI 10.1021/jp0744883
-
Callis PR, Petrenko A, Muino PL, Tusell JR (2007) Ab initio prediction of tryptophan fluorescence quenching by protein electric field enabled electron transfer. J Phys Chem B 111:10335-10339. (Pubitemid 47447594)
-
(2007)
Journal of Physical Chemistry B
, vol.111
, Issue.35
, pp. 10335-10339
-
-
Callis, P.R.1
Petrenko, A.2
Muino, P.L.3
Tusell, J.R.4
-
51
-
-
65249138942
-
Solvent effects on the fluorescence quenching of tryptophan by amides via electron transfer. Experimental and computational studies
-
Muino PL, Callis PR (2009) Solvent effects on the fluorescence quenching of tryptophan by amides via electron transfer. Experimental and computational studies. J Phys Chem B 113:2572-2577.
-
(2009)
J Phys Chem B
, vol.113
, pp. 2572-2577
-
-
Muino, P.L.1
Callis, P.R.2
-
52
-
-
77954635393
-
Protein folded states are kinetic hubs
-
Bowman GR, Pande VS (2010) Protein folded states are kinetic hubs. Proc Natl Acad Sci USA 107:10890-10895.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 10890-10895
-
-
Bowman, G.R.1
Pande, V.S.2
-
53
-
-
77957937199
-
Atomic-level characterization of the structural dynamics of proteins
-
Shaw DE, et al. (2010) Atomic-level characterization of the structural dynamics of proteins. Science 330:341-346.
-
(2010)
Science
, vol.330
, pp. 341-346
-
-
Shaw, D.E.1
-
54
-
-
0014010861
-
Viscosity and density of aqueous solutions of urea and guanidine hydrochroide
-
Kawahara K, Tanford C (1966) Viscosity and density of aqueous solutions of urea and guanidine hydrochroide. J Biol Chem 241:3228-3232.
-
(1966)
J Biol Chem
, vol.241
, pp. 3228-3232
-
-
Kawahara, K.1
Tanford, C.2
|