DNA barcoding insect-host plant associations

Proceedings of the Royal Society B: Biological Sciences

Volumn 276, Issue 1657, 2009, Pages 639-648

  Jurado Rivera, José A ^a   Vogler, Alfried P ^b,c   Reid, Chris A M ^d   Petitpierre, Eduard ^a,e   Gómez Zurita, Jesús ^f  

^a UNIVERSITAT DE LES ILLES BALEARS   (Spain)

^b DEPARTMENT OF LIFE SCIENCES   (United Kingdom)

^c IMPERIAL COLLEGE LONDON   (United Kingdom)

^d AUSTRALIAN MUSEUM   (Australia)

^e CSIC   (Spain)

^f INSTITUTE OF EVOLUTIONARY BIOLOGY CSIC UNIVERSITAT POMPEU FABRA   (Spain)

Author keywords

Coevolution; Herbivory; Host plant; Molecular identification; trnL cpDNA

Indexed keywords

BEETLE; COEVOLUTION; DNA; EVERGREEN TREE; FEASIBILITY STUDY; HERBIVORY; HOST PLANT; IDENTIFICATION METHOD; LEGUME; PLANT-INSECT INTERACTION;

AUSTRALASIA; AUSTRALIA;

CHRYSOMELIDAE; CHRYSOMELINAE; COLEOPTERA; FABACEAE; HEXAPODA; MYRTACEAE;

EID: 58249119480     PISSN: 09628452     EISSN: 14712970     Source Type: Journal    
DOI: 10.1098/rspb.2008.1264     Document Type: Article

References (39)

1. Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. 1990 Basic local alignment search tool. J. Mol. Biol. 215, 403-410.
2. Bradley, B. J., Stiller, M., Doran-Sheehy, D. M., Harris, T., Chapman, C. A., Vigilant, L. & Poinar, H. 2007 Plant DNA sequences from feces: potential means for assessing diets of wild primates. Am. J. Primatol. 69, 699-705.
3. Chase, M. W. et al. 2007 A proposal for a standardised protocol to barcode all land plants. Taxon 56, 295-299.
4. Chen, Y., Giles, K. L., Payton, M. E. & Greenstone, M. H. 2000 Identifying key cereal aphid predators by molecular gut analysis. Mol. Ecol. 9, 1887-1898.
5. Crisp, M., Cook, L. & Steane, D. 2004 Radiation of the Australian flora: what can comparisons of molecular phylogenies across multiple taxa tell us about the evolution of diversity in present-day communities? Phil. Trans. R. Soc. B 359, 1551-1571.
6. Fazekas, A. J., Burgess, K. S., Kesanakurti, P. R., Graham, S. W., Newmaster, S. G., Husband, B. C., Percy, D. M., Hajibabaei, M. & Barrett, S. C. H. 2008 Multiple multilocus DNA barcodes from the plastid genome discriminate plant species equally well. PLoS ONE 3, e2882.
7. Fry, B., Joern, A. & Parker, P. L. 1978 Grasshopper food web analysis: use of carbon isotope ratios to examine feeding relationships among terrestrial herbivores. Ecology 59, 498-506.
8. Greenstone, M. H., Rowley, D. L., Weber, D. C., Payton, M. E. & Hawthorne, D. J. 2007 Feeding mode and prey detectability half-lives in molecular gut-content analysis: an example with two predators of the Colorado potato beetle. Bull. Entomol. Res. 97, 201-209.
9. Grimaldi, D. & Engel, M. S. 2005 Evolution of the insects. Cambridge, UK: Cambridge University Press.
10. Hall, T. A. 1999 BIOEDIT: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 41, 95-98.
11. Hebert, P. D. N., Cywinska, A., Ball, S. L. & deWaard, J. R. 2003 Biological identifications through DNA barcodes. Proc. R. Soc. B 270, 313-321.
12. Hebert, P. D. N., Penton, E. H., Burns, J. M., Janzen, D. H. & Hallwachs, W. 2004 Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator. Proc. Natl Acad. Sci. USA 41, 14 812-14 817.
13. Hoogendoorn, M. & Heimpel, G. E. 2001 PCR-based gut content analysis of insect predators: using ribosomal ITS-1 fragments from prey to estimate predation frequency. Mol. Ecol. 10, 2059-2067.
14. Isley, F. B. & Alexander, G. 1949 Analysis of insect food habits by crop examination. Science 109, 115-116.
15. Jolivet, P. & Hawkeswood, T. J. 1995 Host-plants of the Chrysomelidae of the world. Leiden, Germany: Backhuys Publishers.
16. Jolivet, P. & Verma, K. K. 2002 Biology of leaf beetles. Andover, UK: Intercept Publishers.
17. Katoh, K., Kuma, K.-i., Toh, H. & Miyata, T. 2005 MAFFT v. 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res. 33, 511-518.
18. Korning, P. G., Hebsgaard, S. M., Rouzé, P. & Brunak, S. 1996 Cleaning the GenBank Arabidopsis thaliana data set. Nucleic Acids Res. 24, 316-320.
19. Kress, W. J. & Erickson, D. L. 2007 A two locus global DNA barcode for land plants: the coding rbcL gene complements the non-coding trnH-psbA spacer region. PLoS ONE 2, e508.
20. Lahaye, R. et al. 2008 DNA barcoding the floras of biodiversity spots. Proc. Natl Acad. Sci. USA 105, 2923-2928.
21. Maslin, B. R., Miller, J. T. & Seigler, D. S. 2003 Overview of the generic status of Acacia (Leguminosae: Mimosoideae). Aust. Syst. Bot. 16, 1-18.
22. Matheson, C. D., Muller, G. C., Junnila, A., Vernon, K., Hausmann, A., Miller, M. A., Greenblatt, C. & Schlein, Y. 2008 A PCR method for detection of plant meals from the guts of insects. Org. Div. Evol. 7, 294-303.
23. May, R. M. 1988 How many species are there on earth? Science 241, 1441-1449.
24. Normark, B. B., Jordal, B. H. & Farrell, B. D. 1999 Origin of a haplodiploid beetle lineage. Proc. R. Soc. B 226, 2253-2259.
25. Pokon, R., Novotny, V. & Samuelson, G. A. 2005 Host specialization and species richness of root-feeding chrysomelid larvae (Chrysomelidae, Coleoptera) in a New Guinea rain forest. J. Trop. Ecol. 21, 595-604.
26. Posada, D. & Crandall, K. A. 1998 Modeltest: testing the model of DNA substitution. Bioinformatics 14, 817-818.
27. Post, D. M. 2002 Using stable isotopes to estimate trophic position: models, methods, and assumptions. Ecology 83, 703-718.
28. Reid, C. A. M. 2006 A taxonomic revision of the Australian Chrysomelinae, with a key to the genera (Coleoptera: Chrysomelidae). Zootaxa 1292, 1-119.
29. Reid, C. A. M. & Ślipiński, S. A. 2001 Peltoschema Reitter, a hitherto unrecognized Chrysomelinae: redescription and systematic placement (Coleoptera: Chrysomelidae). Coleopt. Bull. 55, 330-337.
30. Rodríguez, F., Oliver, J. L., Marín, A. & Medina, J. R. 1990 The general stochastic model of nucleotide substitution. J. Theor. Biol. 142, 485-501.
31. Ronquist, F. & Huelsenbeck, J. P. 2003 MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19, 1572-1574.
32. Simon, C., Frati, F., Beckenbach, A., Crespi, B., Liu, H. & Flook, P. 1994 Evolution, weighting, and phylogenetic utility of mitochondrial gene sequences and compilation of conserved polymerase chain reaction primers. Ann. Entomol. Soc. Am. 87, 651-701.
33. Soltis, D. E., Soltis, P. S., Endress, P. K. & Chase, M. W. 2005 Phylogeny and evolution of angiosperms. Sunderland, MA: Sinauer Associates.
34. Stewart, D. R. M. 1967 Analysis of plant epidermis in faeces: a technique for studying the food preferences of grazing herbivores. J. Appl. Ecol. 4, 83-111.
35. Symondson, W. O. C. 2002 Molecular identification prey in predator diets. Mol. Ecol. 11, 627-641.
36. Taberlet, P., Gielly, L., Pautou, G. & Bouvet, J. 1991 Universal primers for amplification of three noncoding regions of chloroplast DNA. Plant Mol. Biol. 17, 1105-1109.
37. Taberlet, P. et al. 2007 Power and limitations of the chloroplast trnL (UAA) intron for plant DNA barcoding. Nucleic Acids Res. 35, e14.
38. Zaidi, R. H., Jaal, Z., Hawkes, N. J., Hemingway, J. & Symondson, W. O. C. 1999 Can the detection of prey DNA amongst the gut contents of invertebrate predators provide a new technique for quantifying predation in the field? Mol. Ecol. 8, 2081-2088.
39. Zhang, Q., Liu, Y. & Sodmergen 2003 Examination of the cytoplasmatic DNA in male reproductive cells to determine the potential for cytoplasmatic inheritance in 295 angiosperm species. Plant Cell. Physiol. 44, 941-951.