Biosynthesis of Polyhydroxyalkanaotes by a Novel Facultatively Anaerobic Vibrio sp. under Marine Conditions

Marine Biotechnology

Volumn 14, Issue 3, 2012, Pages 323-331

  Numata, Keiji ^a   Doi, Yoshiharu ^a  

^a RIKEN   (Japan)

Author keywords

Bioplastic; Facultative anaerobe; Polyhydroxyalkanoate (PHA); Vibrio sp.

Indexed keywords

AEROBIC-ANAEROBIC; BIOPLASTICS; CARBON SOURCE; CULTURE MEDIUM; DISSOLVED OXYGEN CONCENTRATIONS; ECO-FRIENDLY; EXTRACELLULAR; FACULTATIVE ANAEROBES; HYDROXYBUTYRATE; INDUSTRIAL PRODUCTION; MARINE BACTERIUM; MARINE ECOSYSTEM; POLYHYDROXYALKANOATES; PRACTICAL MATERIALS; SOLE CARBON SOURCE; SOYBEAN OIL; VIBRIO SP;

BACTERIA; BIOCHEMISTRY; BIOSYNTHESIS; CARBON; CARBON DIOXIDE; ENZYME ACTIVITY; OILSEEDS; ORGANIC POLYMERS; REINFORCED PLASTICS; SEAWATER;

MARINE POLLUTION;

POLYHYDROXYALKANOIC ACID; SEA WATER;

BACTERIUM; CARBON CYCLE; CARBON DIOXIDE; CHEMICAL ENVIRONMENTAL CONDITIONS; CONCENTRATION (COMPOSITION); DISSOLVED OXYGEN; FILTRATION; MARINE ECOSYSTEM; MARINE POLLUTION; MOLECULAR ANALYSIS; ORGANIC COMPOUND; OXIDATION; POLLUTION EFFECT; SALT WATER; SOYBEAN; VEGETABLE OIL;

ANAEROBIC BACTERIUM; ARTICLE; BATCH CELL CULTURE; BIOSYNTHESIS; CHEMISTRY; CLASSIFICATION; CULTURE MEDIUM; ISOLATION AND PURIFICATION; METABOLISM; METHODOLOGY; SPECIES DIFFERENCE; SYNTHESIS; VIBRIO;

BACTERIA, ANAEROBIC; BATCH CELL CULTURE TECHNIQUES; CULTURE MEDIA; POLYHYDROXYALKANOATES; SEAWATER; SPECIES SPECIFICITY; VIBRIO;

BACTERIA (MICROORGANISMS); GLYCINE MAX; VIBRIO; VIBRIO SP.;

EID: 84859434243     PISSN: 14362228     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10126-011-9416-1     Document Type: Article

References (44)

1. Abe H, Doi Y, Fukushima T, Eya H (1994) Biosynthesis from gluconate of a random copolyester consisting of 3-hydroxybutyrate and medium-chain-length 3-hydroxyalkanoates by Pseudomonas sp. 61-3. Int J Biol Macromol 16: 115-119.
2. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215: 403-410.
3. Campbell JW, Morgan-Kiss RM, Cronan JE Jr (2003) A new Escherichia coli metabolic competency: growth on fatty acids by a novel anaerobic beta-oxidation pathway. Mol Microbiol 47: 793-805.
4. De Smet MJ, Eggink G, Witholt B, Kingma J, Wynberg H (1983) Characterization of intracellular inclusions formed by Pseudomonas oleovorans during growth on octane. J Bacteriol 154: 870-878.
5. Doi Y (ed) (1990) Microbial polyesters. VCH Publishers, New York, USA.
6. Doi Y, Steinbüchel A (eds) (2001) Biopolymers. Wiley-VCH, Weinheim, Germany.
7. Doi Y, Tamaki A, Kunioka M, Soga K (1987) Biosynthesis of an unusual copolyester (10 mol-percent 3-hydroxybutyrate and 90 mol-percent 3-hydroxyvalerate units) in alcaligenes-eutrophus from pentanoic acid. J Chem Soc Chem Comm: 1635-1636.
8. Fiedler S, Steinbuchel A, Rehm BH (2002) The role of the fatty acid beta-oxidation multienzyme complex from pseudomonas oleovorans in polyhydroxyalkanoate biosynthesis: molecular characterization of the fadBA operon from P. oleovorans and of the enoyl-CoA hydratase genes phaJ from P. oleovorans and Pseudomonas putida. Arch Microbiol 178: 149-160.
9. Fuchtenbusch B, Wullbrandt D, Steinbuchel A (2000) Production of polyhydroxyalkanoic acids by Ralstonia eutropha and Pseudomonas oleovorans from an oil remaining from biotechnological rhamnose production. Appl Microbiol Biot 53: 167-172.
10. Fukui T, Doi Y (1997) Cloning and analysis of the poly(3-hydroxybutyrate-co-3-hydroxyhexanoate) biosynthesis genes of Aeromonas caviae. J Bacteriol 179: 4821-4830.
11. Fukui T, Ohsawa K, Mifune J, Orita I, Nakamura S (2011) Evaluation of promoters for gene expression in polyhydroxyalkanoate-producing Cupriavidus necator h16. Appl Microbiol Biot 89: 1527-1536.
12. Fukui T, Suzuki M, Tsuge T, Nakamura S (2009) Microbial synthesis of poly((r)-3-hydroxybutyrate-co-3-hydroxypropionate) from unrelated carbon sources by engineered Cupriavidus necator. Biomacromolecules 10: 700-706.
13. Fukui T, Yokomizo S, Kobayashi G, Doi Y (1999) Co-expression of polyhydroxyalkanoate synthase and (R)-enoyl-CoA hydratase genes of Aeromonas caviae establishes copolyester biosynthesis pathway in Escherichia coli. FEMS Microbiol Lett 170: 69-75.
14. Gonzalez-Garcia Y, Nungaray J, Cordova J, Gonzalez-Reynoso O, Koller M, Atlic A, Braunegg G (2008) Biosynthesis and characterization of polyhydroxyalkanoates in the polysaccharide-degrading marine bacterium Saccharophagus degradans ATCC 43961. J Ind Microbiol Biot 35: 629-633.
15. Iwata T, Aoyagi Y, Fujita M, Yamane H, Doi Y, Suzuki Y, Takeuchi A, Uesugi K (2004) Processing of a strong biodegradable poly[(R)-3-hydroxybutyrate] fiber and a new fiber structure revealed by micro-beam X-ray diffraction with synchrotron radiation. Macromol Rapid Comm 25: 1100-1104.
16. Karl DM (2007) Microbial oceanography: paradigms, processes, and promise. Nat Rev Microbiol 5: 759-769.
17. Kobayashi T, Enomoto S, Sakarazaki R, Kuwahara S (1963) A new selective medium for pathogenic vibrios: T. C. B. S. Agar. Jap J Bacteriol 18: 387-391.
18. Lemoignei M (1926) Products of dehydration and of polymerization of β-hydroxybutyric acid. Bull Soc Chim Biol 8: 770-782.
19. Lenz RW, Marchessault RH (2005) Bacterial polyesters: biosynthesis, biodegradable plastics and biotechnology. Biomacromolecules 6: 1-8.
20. Liebergesell M, Steinbuchel A (1993) Cloning and molecular analysis of the poly(3-hydroxybutyric acid) biosynthetic genes of Thiocystis violacea. Appl Microbiol Biot 38: 493-501.
21. Lopez NI, Pettinari MJ, Stackebrandt E, Tribelli PM, Potter M, Steinbuchel A, Mendez BS (2009) Pseudomonas extremaustralis sp. Nov., a poly(3-hydroxybutyrate) producer isolated from an Antarctic environment. Curr Microbiol 59: 514-519.
22. Molitoris E, Joseph SW, Krichevsky MI, Sindhuhardja W, Colwell RR (1985) Characterization and distribution of Vibrio-alginolyticus and Vibrio-parahaemolyticus isolated in Indonesia. Appl Environ Microb 50: 1388-1394.
23. Moran MA, Miller WL (2007) Resourceful heterotrophs make the most of light in the coastal ocean. Nat Rev Microbiol 5: 792-800.
24. Morris GK, Merson MH, Huq I, Kibrya AKMG, Black R (1979) Comparison of four plating media for isolating Vibrio-cholerae. J Clin Microbiol 9: 79-83.
25. Nakamura S, Doi Y, Scandola M (1992) Microbial synthesis and characterization of poly(3-hydroxybutyrate-co-4-hydroxybutyrate). Macromolecules 25: 4237-4241.
26. Nakanishi Y (1963) An isolation agar medium for cholera and enteropathogenic halophilic vibrios. Modern Media 9: 246.
27. Park SJ, Ahn WS, Green PR, Lee SY (2001) Production of poly(3-hydroxybutyrate-co-3-hydroxyhexanoate) by metabolically engineered Escherichia coli strains. Biomacromolecules 2: 248-254.
28. Pizzoli M, Scandola M, Ceccorulli G (1994) Crystallization kinetics and morphology of poly(3-hydroxybutyrate) cellulose ester blends. Macromolecules 27: 4755-4761.
29. Pohlmann A, Fricke WF, Reinecke F, Kusian B, Liesegang H, Cramm R, Eitinger T, Ewering C, Potter M, Schwartz E, Strittmatter A, Voss I, Gottschalk G, Steinbuchel A, Friedrich B, Bowien B (2006) Genome sequence of the bioplastic-producing "knallgas " bacterium Ralstonia eutropha H16. Nat Biotechnol 24: 1257-1262.
30. Qi Q, Rehm BH (2001) Polyhydroxybutyrate biosynthesis in Caulobacter crescentus: molecular characterization of the polyhydroxybutyrate synthase. Microbiology 147: 3353-3358.
31. Rainey FA, Stackebrandt E (1993) 16 s rDNA analysis reveals phylogenetic diversity among the polysaccharolytic Clostridia. FEMS Microbiol Lett 113: 125-128.
32. Rehm BH (2003) Polyester synthases: natural catalysts for plastics. Biochem J 376: 15-33.
33. Saito Y, Doi Y (1994) Microbial synthesis and properties of poly(3-hydroxybutyrate-co-4-hydroxybutyrate) in Comamonas-acidovorans. Int J Biol Macromol 16: 99-104.
34. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425.
35. Shimamura E, Kasuya K, Kobayashi G, Shiotani T, Shima Y, Doi Y (1994) Physical-properties and biodegradability of microbial poly(3-hydroxybutyrate-co-3-hydroxyhexanoate). Macromolecules 27: 878-880.
36. Spiekermann P, Rehm BHA, Kalscheuer R, Baumeister D, Steinbuchel A (1999) A sensitive, viable-colony staining method using nile red for direct screening of bacteria that accumulate polyhydroxyalkanoic acids and other lipid storage compounds. Arch Microbiol 171: 73-80.
37. Steinbuchel A, Hustede E, Liebergesell M, Pieper U, Timm A, Valentin H (1993) Molecular basis for biosynthesis and accumulation of polyhydroxyalkanoic acids in bacteria. FEMS Microbiol Rev 10: 347-350.
38. Sun WQ, Teng K, Meighen E (1995) Detection of poly(3-hydroxybutyrate) granules by electron-microscopy of Vibrio-harveyi stained with malachite green. Can J Microbiol 41: 131-137.
39. Timm A, Steinbuchel A (1990) Formation of polyesters consisting of medium-chain-length 3-hydroxyalkanoic acids from gluconate by Pseudomonas aeruginosa and other fluorescent pseudomonads. Appl Environ Microb 56: 3360-3367.
40. Tsuge T, Fukui T, Matsusaki H, Taguchi S, Kobayashi G, Ishizaki A, Doi Y (2000) Molecular cloning of two (R)-specific enoyl-CoA hydratase genes from Pseudomonas aeruginosa and their use for polyhydroxyalkanoate synthesis. FEMS Microbiol Lett 184: 193-198.
41. Tsuge T, Watanabe S, Shimada D, Abe H, Doi Y, Taguchi S (2007) Combination of n149s and d171g mutations in Aeromonas caviae polyhydroxyalkanoate synthase and impact on polyhydroxyalkanoate biosynthesis. FEMS Microbiol Lett 277: 217-222.
42. Tsuge T, Yamamoto T, Yano K, Abe H, Doi Y, Taguchi S (2009) Evaluating the ability of polyhydroxyalkanoate synthase mutants to produce P(3HB-co-3HA) from soybean oil. Macromol Biosci 9: 71-78.
43. Umani SF, Del Negro P, Larato C, De Vittor C, Cabrini M, Celio M, Falconi C, Tamberlich F, Azam F (2007) Major inter-annual variations in microbial dynamics in the Gulf of Trieste (northern Adriatic Sea) and their ecosystem implications. Aquat Microb Ecol 46: 163-175.
44. Wang Q, Zhang HX, Chen Q, Chen XL, Zhang YZ, Qi QS (2010) A marine bacterium accumulates polyhydroxyalkanoate consisting of mainly 3-hydroxydodecanoate and 3-hydroxydecanoate. World J Microb Biot 26: 1149-1153.