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Volumn 9, Issue 2, 2012, Pages 125-128

Optimal selection of 2D reversed-phase-reversed-phase HPLC separation techniques in bottom-up proteomics

Author keywords

2D separations; peptide retention prediction; reversed phase HPLC; shotgun bottom up proteomics

Indexed keywords

ADAP PROTEIN; ADAPTOR PROTEIN; SYNTHETIC PEPTIDE; UNCLASSIFIED DRUG;

EID: 84859395009     PISSN: 14789450     EISSN: 17448387     Source Type: Journal    
DOI: 10.1586/epr.12.8     Document Type: Note
Times cited : (10)

References (19)
  • 2
    • 54749158155 scopus 로고    scopus 로고
    • Multidimensional LC separations in shotgun proteomics
    • Motoyama A, Yates JR 3rd. Multidimensional LC separations in shotgun proteomics. Anal. Chem. 80(19), 7187-7193 (2008).
    • (2008) Anal. Chem. , vol.80 , Issue.19 , pp. 7187-7193
    • Motoyama, A.1    Yates III, J.R.2
  • 3
    • 0035106351 scopus 로고    scopus 로고
    • Large-scale analysis of the yeast proteome by multidimensional protein identification technology
    • Washburn MP, Wolters D, Yates JR 3rd. Large-scale analysis of the yeast proteome by multidimensional protein identification technology. Nat. Biotechnol. 19(3), 242-247 (2001).
    • (2001) Nat. Biotechnol. , vol.19 , Issue.3 , pp. 242-247
    • Washburn, M.P.1    Wolters, D.2    Yates III, J.R.3
  • 4
    • 26444539668 scopus 로고    scopus 로고
    • Orthogonality of separation in two-dimensional liquid chromatography
    • Review of separation orthogonality for 2D peptide fractionation
    • Gilar M, Olivova P, Daly AE, Gebler JC. Orthogonality of separation in two-dimensional liquid chromatography. Anal. Chem. 77(19), 6426-6434 (2005). Review of separation orthogonality for 2D peptide fractionation.
    • (2005) Anal. Chem. , vol.77 , Issue.19 , pp. 6426-6434
    • Gilar, M.1    Olivova, P.2    Daly, A.E.3    Gebler, J.C.4
  • 5
    • 20444454237 scopus 로고    scopus 로고
    • Separation, detection, and identification of peptides by ion-pair reversed-phase high-performance liquid chromatography-electrospray ionization mass spectrometry at high and low pH
    • Toll H, Oberacher H, Swart R, Huber CG. Separation, detection, and identification of peptides by ion-pair reversed-phase high-performance liquid chromatography-electrospray ionization mass spectrometry at high and low pH. J. Chromatogr. A 1079(1-2), 274-286 (2005).
    • (2005) J. Chromatogr. A , vol.1079 , Issue.1-2 , pp. 274-286
    • Toll, H.1    Oberacher, H.2    Swart, R.3    Huber, C.G.4
  • 6
    • 51949083217 scopus 로고    scopus 로고
    • Practical implementation of 2D HPLC scheme with accurate peptide retention prediction in both dimensions for high-throughput bottom-up proteomics
    • Introduction of concatenation in offline 2D reversed-phase (RP)-RP separation
    • Dwivedi RC, Spicer V, Harder M et al. Practical implementation of 2D HPLC scheme with accurate peptide retention prediction in both dimensions for high-throughput bottom-up proteomics. Anal Chem. 80(18), 7036-7042 (2008). Introduction of concatenation in offline 2D reversed-phase (RP)-RP separation.
    • (2008) Anal Chem. , vol.80 , Issue.18 , pp. 7036-7042
    • Dwivedi, R.C.1    Spicer, V.2    Harder, M.3
  • 7
    • 36348936820 scopus 로고    scopus 로고
    • Two-dimensional reversed-phase x ion-pair reversed-phase HPLC: An alternative approach to high-resolution peptide separation for shotgun proteome analysis
    • Detailed comparison of strong-cation exchange and high-pH RP (polymeric sorbent) as a first-dimension separation
    • Delmotte N, Lasaosa M, Tholey A et al. Two-dimensional reversed-phase x ion-pair reversed-phase HPLC: an alternative approach to high-resolution peptide separation for shotgun proteome analysis. J. Proteome Res. 6(11), 4363-4373 (2007). Detailed comparison of strong-cation exchange and high-pH RP (polymeric sorbent) as a first-dimension separation.
    • (2007) J. Proteome Res. , vol.6 , Issue.11 , pp. 4363-4373
    • Delmotte, N.1    Lasaosa, M.2    Tholey, A.3
  • 8
    • 79955752894 scopus 로고    scopus 로고
    • Reversed-phase chromatography with multiple fraction concatenation strategy for proteome profiling of human MCF10A cells
    • Detailed comparison of strong-cation exchange and high-pH RP (silica-based sorbent with concatenation) as a first-dimension separation
    • Wang Y, Yang F, Gritsenko MA et al. Reversed-phase chromatography with multiple fraction concatenation strategy for proteome profiling of human MCF10A cells. Proteomics 11(10), 2019-2026 (2011). Detailed comparison of strong-cation exchange and high-pH RP (silica-based sorbent with concatenation) as a first-dimension separation.
    • (2011) Proteomics , vol.11 , Issue.10 , pp. 2019-2026
    • Wang, Y.1    Yang, F.2    Gritsenko, M.A.3
  • 9
    • 44449172641 scopus 로고    scopus 로고
    • Evaluation of comprehensive multidimensional separations using reversed-phase, reversed-phase liquid chromatography/mass spectrometry for shotgun proteomics
    • Nakamura T, Kuromitsu J, Oda Y. Evaluation of comprehensive multidimensional separations using reversed-phase, reversed-phase liquid chromatography/mass spectrometry for shotgun proteomics. J. Proteome Res. 7(3), 1007-1011 (2008).
    • (2008) J. Proteome Res. , vol.7 , Issue.3 , pp. 1007-1011
    • Nakamura, T.1    Kuromitsu, J.2    Oda, Y.3
  • 10
    • 77957192535 scopus 로고    scopus 로고
    • Quantitative proteomic analyses of influenza virus-infected cultured human lung cells
    • Coombs KM, Berard A, Xu W et al. Quantitative proteomic analyses of influenza virus-infected cultured human lung cells. J. Virol. 84(20), 10888-10906 (2010).
    • (2010) J. Virol. , vol.84 , Issue.20 , pp. 10888-10906
    • Coombs, K.M.1    Berard, A.2    Xu, W.3
  • 11
    • 63149169859 scopus 로고    scopus 로고
    • The effects of infliximab therapy on the serum proteome of rheumatoid arthritis patients
    • Dwivedi RC, Dhindsa N, Krokhin OV et al. The effects of infliximab therapy on the serum proteome of rheumatoid arthritis patients. Arthritis Res. Ther. 11(2), R32 (2009).
    • (2009) Arthritis Res. Ther. , vol.11 , Issue.2
    • Dwivedi, R.C.1    Dhindsa, N.2    Krokhin, O.V.3
  • 12
    • 79957509734 scopus 로고    scopus 로고
    • Dynamics of plasma proteome during leptin-replacement therapy in genetically based leptin deficiency
    • Andreev VP, Dwivedi RC, Paz-Filho G et al. Dynamics of plasma proteome during leptin-replacement therapy in genetically based leptin deficiency. Pharmacogenomics J. 11(3), 174-190 (2011).
    • (2011) Pharmacogenomics J. , vol.11 , Issue.3 , pp. 174-190
    • Andreev, V.P.1    Dwivedi, R.C.2    Paz-Filho, G.3
  • 13
    • 76149101960 scopus 로고    scopus 로고
    • Assessment of the reproducibility of random hexapeptide peptide library-based protein normalization
    • Dwivedi RC, Krokhin OV, Cortens JP et al. Assessment of the reproducibility of random hexapeptide peptide library-based protein normalization. J. Proteome Res. 9(2), 1144-1149 (2010).
    • (2010) J. Proteome Res. , vol.9 , Issue.2 , pp. 1144-1149
    • Dwivedi, R.C.1    Krokhin, O.V.2    Cortens, J.P.3
  • 14
    • 84856657286 scopus 로고    scopus 로고
    • Improved two-dimensional reversed phase-reversed phase LC-MS/MS approach for identification of peptide-protein interactions
    • Stephanowitz H, Lange S, Lang D et al. Improved two-dimensional reversed phase-reversed phase LC-MS/MS approach for identification of peptide-protein interactions. J. Proteome Res. 11(2), 1175-1183 (2011).
    • (2011) J. Proteome Res. , vol.11 , Issue.2 , pp. 1175-1183
    • Stephanowitz, H.1    Lange, S.2    Lang, D.3
  • 15
    • 84859324942 scopus 로고    scopus 로고
    • Reversed-phase HPLC of peptides - A valuable sample preparation tool in bottom-up proteomics: Separation selectivity in single and multi-dimensional separation modes
    • Ivanov AR, Lazarev AV (Eds). Springer, Dordrecht, The Netherlands; Heidelberg, Germany; London, UK; and New York, NY, USA; Review of separation orthogonality for 2D RP-RP peptide fractionation
    • Dwivedi RC, Spicer V, Krokhin OV. Reversed-phase HPLC of peptides - a valuable sample preparation tool in bottom-up proteomics: separation selectivity in single and multi-dimensional separation modes. In: Sample Preparation in Biological Mass Spectrometry. Ivanov AR, Lazarev AV (Eds). Springer, Dordrecht, The Netherlands; Heidelberg, Germany; London, UK; and New York, NY, USA; 1031-1050 (2011). Review of separation orthogonality for 2D RP-RP peptide fractionation.
    • (2011) Sample Preparation in Biological Mass Spectrometry , pp. 1031-1050
    • Dwivedi, R.C.1    Spicer, V.2    Krokhin, O.V.3
  • 16
    • 5744223586 scopus 로고    scopus 로고
    • An improved model for prediction of retention times of tryptic peptides in ion pair reversed-phase HPLC: Its application to protein peptide mapping by off-line HPLC-MALDI MS
    • Krokhin OV, Craig R, Spicer V et al. An improved model for prediction of retention times of tryptic peptides in ion pair reversed-phase HPLC: its application to protein peptide mapping by off-line HPLC-MALDI MS. Mol. Cell Proteomics 3(9), 908-919 (2004).
    • (2004) Mol. Cell Proteomics , vol.3 , Issue.9 , pp. 908-919
    • Krokhin, O.V.1    Craig, R.2    Spicer, V.3
  • 17
    • 33746448330 scopus 로고    scopus 로고
    • Improved peptide elution time prediction for reversed-phase liquid chromatography-MS by incorporating peptide sequence information
    • Petritis K, Kangas LJ, Yan B et al. Improved peptide elution time prediction for reversed-phase liquid chromatography-MS by incorporating peptide sequence information. Anal. Chem. 78(14), 5026-5039 (2006).
    • (2006) Anal. Chem. , vol.78 , Issue.14 , pp. 5026-5039
    • Petritis, K.1    Kangas, L.J.2    Yan, B.3
  • 18
    • 33751208935 scopus 로고    scopus 로고
    • Sequence-specific retention calculator. Algorithm for peptide retention prediction in ion-pair RP-HPLC: Application to 300- And 100-Å pore size C18 sorbents
    • Krokhin OV. Sequence-specific retention calculator. Algorithm for peptide retention prediction in ion-pair RP-HPLC: application to 300- and 100-Å pore size C18 sorbents. Anal. Chem. 78(22), 7785-7795 (2006).
    • (2006) Anal. Chem. , vol.78 , Issue.22 , pp. 7785-7795
    • Krokhin, O.V.1
  • 19
    • 75749089270 scopus 로고    scopus 로고
    • Utility of retention prediction model for investigation of peptide separation selectivity in reversed-phase liquid chromatography: Impact of concentration of trifluoroacetic acid, column temperature, gradient slope and type of stationary phase
    • Gilar M, Xie H, Jaworski A. Utility of retention prediction model for investigation of peptide separation selectivity in reversed-phase liquid chromatography: impact of concentration of trifluoroacetic acid, column temperature, gradient slope and type of stationary phase. Anal. Chem. 82(1), 265-275 (2010).
    • (2010) Anal. Chem. , vol.82 , Issue.1 , pp. 265-275
    • Gilar, M.1    Xie, H.2    Jaworski, A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.