Harnessing aptamers for electrochemical detection of endotoxin

Analytical Biochemistry

Volumn 424, Issue 1, 2012, Pages 12-20

  Kim, Sung Eun ^a   Su, Wenqiong ^a   Cho, Misuk ^a   Lee, Youngkwan ^a   Choe, Woo Seok ^a  

^a Sungkyunkwan University   (South Korea)

Author keywords

Aptamer; Electrochemical aptasensor; Lipopolysaccharide; NECEEM based non SELEX

Indexed keywords

BINDERS; DISSOCIATION; DNA; ELECTROCHEMICAL SENSORS;

APTAMERS; DISSOCIATION CONSTANT; ELECTROCHEMICAL APTASENSOR; ELECTROCHEMICAL DETECTION; LINEAR DETECTION RANGES; LIPOPOLYSACCHARIDES; NECEEM-BASED NON-SELEX; SENSITIVITY AND SPECIFICITY;

CHEMICAL DETECTION;

APTAMER; ENDOTOXIN; LIPOPOLYSACCHARIDE; SINGLE STRANDED DNA;

APTASENSOR; ARTICLE; BINDING AFFINITY; BIOSENSOR; CELL LYSATE; ELECTROCHEMISTRY; LIMULUS AMOEBOCYTE LYSATE; NONEQUILIBRIUM CAPILLARY ELECTROPHORESIS OF EQUILIBRIUM MIXTURE; PRIORITY JOURNAL; SCREENING TEST; SENSITIVITY AND SPECIFICITY; SEQUENCE ANALYSIS; SYSTEMATIC EVOLUTION OF LIGANDS BY EXPONENTIAL ENRICHMENT;

LIMULUS AMOEBOCYTE;

EID: 84859306757     PISSN: 00032697     EISSN: 10960309     Source Type: Journal    
DOI: 10.1016/j.ab.2012.02.016     Document Type: Article

References (40)

1. A. Preston, R.E. Mandrell, B.W. Gibson, and M.A. Apicella The lipooligosaccharides of pathogenic gram-negative bacteria Crit. Rev. Microbiol. 22 1996 139 180
2. R.J. Ulevitch, and P.S. Tobias Receptor-dependent mechanisms of cell stimulation by bacterial endotoxin Annu. Rev. Immunol. 13 1995 437 457
3. Y.G. Kim, C.S. Lee, W.J. Chung, E.M. Kim, D.S. Shin, J.H. Rhim, Y.S. Lee, B.G. Kim, and J. Chung Screening of LPS-specific peptides from a phage display library using epoxy beads Biochem. Biophys. Res. Commun. 329 2005 312 317
4. J.P. Nolan, J.J. McDevitt, G.S. Goldmann, and C. Bishop Endotoxin binding by charged and uncharged resins Proc. Soc. Exp. Biol. Med. 149 1975 766 770
5. A.C. Issekutz Removal of gram-negative endotoxin from solutions by affinity chromatography J. Immunol. Methods 61 1983 275 281
6. S. Minobe, T. Sato, T. Tosa, and I. Chibata Characteristics of immobilized histamine for pyrogen adsorption J. Chromatogr. A 262 1983 193 198
7. F.B. Anspach, and O. Hilbeck Removal of endotoxins by affinity sorbents J. Chromatogr. A 711 1995 81 92
8. T.E. Karplus, R.J. Ulevitch, and C.B. Wilson A new method for reduction of endotoxin contaminations from protein solutions J. Immunol. Methods 105 1987 211 220
9. I.P. Wicks, M.L. Howell, T. Hancock, H. Kohsaka, T. Olee, and D.A. Carson Bacterial lipopolysaccharide copurifies with plasmid DNA: implications for animal models and human gene therapy Hum. Gene. Ther. 6 1995 317 323
10. P.M. Montbriand, and R.W. Malone Improved method for the removal of endotoxin from DNA J. Biotechnol. 44 1996 43 46
11. D.S. Wilson, and J.W. Szostak In vitro selection of functional nucleic acids Annu. Rev. Biochem. 68 1999 611 647
12. M. Famulok, G. Mayer, and M. Blind Nucleic acid aptamers-from selection in vitro to applications in vivo Acc. Chem. Res. 39 2000 591 599
13. A. Ellington, and J. Szostak In vitro selection of RNA molecules that bind specific ligands Nature 346 1990 818 822
14. C. Tuerk, and L. Gold Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase Science 249 1990 505 510
15. B. Vant-Hull, A. Payano-Baez, R.H. Davis, and L. Gold The mathematics of SELEX against complex targets J. Mol. Biol. 278 1998 579 597
16. Y. Tian, N. Adya, S. Wagner, C.Z. Giam, M.R. Green, and A.D. Ellington Dissecting protein:protein interactions between transcription factors with an RNA aptamer RNA 1 1995 317 326
17. D. Schneider, L. Gold, and T. Platt Selective enrichment of RNA species for tight binding to Escherichia coli rho factor FASEB J. 7 1993 201 207
18. H. Chen, and L. Gold Selection of high-affinity RNA ligands to reverse transcriptase: inhibition of cDNA synthesis and RNase H activity Biochemistry 33 1994 8746 8756
19. A. Petrov, V. Okhonin, M. Berezovski, and S.N. Krylov Kinetic capillary electrophoresis (KCE): a conceptual platform for kinetic homogeneous affinity methods J. Am. Chem. Soc. 127 2005 17104 17110
20. A.P. Drabovich, M. Berezovski, and V. Okhonin Selection of smart aptamers by methods of kinetic capillary electrophoresis Anal. Chem. 78 2006 3171 3178
21. M. Berezovski, M. Musheev, A. Drabovich, and S.N. Krylov Non-SELEX selection of aptamers J. Am. Chem. Soc. 128 2006 1410 1411
22. M.V. Berezovski, M.U. Musheev, A.P. Drabovich, J.V. Jitkova, and S.N. Krylov Non-SELEX: selection of aptamers without intermediate amplification of candidate oligonucleotides Nat. Protoc. 1 2006 1359 1369
23. M. Berezovski, A. Drabovich, S.M. Krylova, M. Musheev, V. Okhonin, A. Petrov, and S.N. Krylov Nonequilibrium capillary electrophoresis of equilibrium mixtures: a universal tool for development of aptamers J. Am. Chem. Soc. 127 2005 3165 3171
24. J.L. Ding, S.T. Gan, and B. Ho Single-stranded DNA oligoaptamers: molecular recognition and LPS antagonism are length- and secondary structure-dependent J. Innate Immun. 1 2009 46 58
25. J.G. Bruno, M.P. Carrillo, and T. Phillips In vitro antibacterial effects of antilipopolysaccharide DNA aptamer-C1qrs complexes Folia Microbiol. 53 2008 295 302
26. A. Wen, Q. Yang, J. Li, F. Lv, Q. Zhong, and C. Chen A novel lipopolysaccharide-antagonizing aptamer protects mice against endotoxemia Biochem. Biophys. Res. Commun. 382 2009 140 144
27. H. Cai, T.M.-H. Lee, and I.M. Hsing Label-free protein recognition using an aptamer-based impedance measurement assay Sens. Actuators B 114 2006 433 437
28. Y. Xu, L. Yang, X. Ye, P. He, and Y. Fang An aptamer-based protein biosensor by detecting the amplified impedance signal Electroanalysis 18 2006 1449 1456
29. A. Sassolas, L.J. Blum, and B.D. Leca-Bouvier Electrochemical aptasensors Electroanalysis 21 2009 1237 1250
30. A. Merkoci, M. Pumera, X. Llopis, B. Perez, M. Delvalle, and S. Alegret New materials for electrochemical sensing VI: carbon nanotubes TrAC Trends Anal. Chem. 24 2005 826 838
31. M.K. Patel, P.R. Solanki, A. Kumar, S. Khare, S. Gupta, and B.D. Malhotra Electrochemical DNA sensor for Neisseria meningitidis detection Biosens. Bioelectron. 25 2010 2586 2591
32. J.Y. Heras, D. Pallarola, and F. Battaglini Electronic tongue for simultaneous detection of endotoxins and other contaminants of microbiological origin Biosens. Bioelectron. 25 2010 2470 2476
33. J.-D. Qiu, R.-P. Liang, R. Wang, L.-X. Fan, Y.-W. Chen, and X.-H. Xia A label-free amperometric immunosensor based on biocompatible conductive redox chitosan-ferrocene/gold nanoparticles matrix Biosens. Bioelectron. 25 2009 852 857
34. M.J. Shin, L. Tan, M.H. Jeong, J.H. Kim, and W.S. Choe Monolith-based immobilized metal affinity chromatography increases production efficiency for plasmid DNA purification J. Chromatogr. A 1218 2011 5273 5278
35. W. Lee, B.K. Oh, W.H. Lee, and J.W. Choi Immobilization of antibody fragment for immunosensor application based on surface plasmon resonance Colloids Surf. B 40 2005 143 148
36. W.Q. Su, H.T. Nguyen, M.S. Cho, Y.K. Son, and Y.K. Lee Synthesis, characterization and self-assembled film of poly(3-((2,3-dihydrothieno[3,4-b][1, 4]dioxin-2-yl)methoxy)propane-1-thiol) (PEDTMSHA) Synth. Met. 160 2010 2471 2475
37. T.M. Herne, and M.J. Tarlov Characterization of DNA probes immobilized on gold surfaces J. Am. Chem. Soc. 119 1997 8916 8920
38. M. Zuker Mfold web server for nucleic acid folding and hybridization prediction Nucleic Acids Res. 31 2003 3406 3415
39. U.K. Sur, R. Subramanian, and V. Lakshminarayanan Cyclic voltammetric and electrochemical impedance studies on the structure, adsorption kinetics, and barrier properties of some organic dithiol self-assembled monolayers on gold J. Colloid Interface Sci. 266 2003 175 182
40. F. Lucarelli Carbon and gold electrodes as electrochemical transducers for DNA hybridisation sensors Biosens. Bioelectron. 19 2004 515 530