메뉴 건너뛰기




Volumn 1, Issue 1, 2008, Pages 46-58

Single-stranded DNA oligoaptamers: Molecular recognition and LPS antagonism are length- and secondary structure-dependent

Author keywords

Binding kinetics; Endotoxin neutralization; Molecular recognition; Oligonucleotides; SsDNA aptamers

Indexed keywords

APTAMER; LIPID A; LIPOPOLYSACCHARIDE; SINGLE STRANDED DNA; THYMIDINE;

EID: 77953425115     PISSN: 1662811X     EISSN: 16628128     Source Type: Journal    
DOI: 10.1159/000145542     Document Type: Article
Times cited : (24)

References (38)
  • 1
    • 0000871575 scopus 로고    scopus 로고
    • Cellular activation mechanisms in septic shock
    • Downey JS, Han J: Cellular activation mechanisms in septic shock. Front Biosci 1998; 3: d468-d476.
    • (1998) Front Biosci , vol.3
    • Downey, J.S.1    Han, J.2
  • 2
    • 0029054796 scopus 로고
    • Plasma lipid transfer proteins
    • Tall A: Plasma lipid transfer proteins. Annu Rev Biochem 1995; 64: 235-257.
    • (1995) Annu Rev Biochem , vol.64 , pp. 235-257
    • Tall, A.1
  • 3
    • 0029147346 scopus 로고
    • Incidence, risk factors, and outcome of severe sepsis and septic shock in adults. A multicenter prospective study in intensive care units. French ICU Group for Severe Sepsis
    • Brun-Buisson C, Doyon F, Carlet J, Della-monica P, Gouin F, Lepoutre A, Mercier JC, Offenstadt G, Regnier B: Incidence, risk factors, and outcome of severe sepsis and septic shock in adults. A multicenter prospective study in intensive care units. French ICU Group for Severe Sepsis. JAMA 1995; 274: 968-974.
    • (1995) JAMA , vol.274 , pp. 968-974
    • Brun-Buisson, C.1    Doyon, F.2    Carlet, J.3    Della-monica, P.4    Gouin, F.5    Lepoutre, A.6    Mercier, J.C.7    Offenstadt, G.8    Regnier, B.9
  • 4
    • 0030588577 scopus 로고    scopus 로고
    • Effects of site-directed mutagenesis of basic residues (Arg 94, Lys 95, Lys 99) of lipopolysaccharide (LPS)-binding protein on binding and transfer of LPS and subsequent immune cell activation
    • Lamping N, Hoess A, Yu B, Park TC, Kirschning CJ, Pfeil D, Reuter D, Wright SD, Herrmann F, Schumann RR: Effects of site-directed mutagenesis of basic residues (Arg 94, Lys 95, Lys 99) of lipopolysaccharide (LPS)-binding protein on binding and transfer of LPS and subsequent immune cell activation. J Immunol 1996; 157: 4648-4656.
    • (1996) J Immunol , vol.157 , pp. 4648-4656
    • Lamping, N.1    Hoess, A.2    Yu, B.3    Park, T.C.4    Kirschning, C.J.5    Pfeil, D.6    Reuter, D.7    Wright, S.D.8    Herrmann, F.9    Schumann, R.R.10
  • 5
    • 0025107568 scopus 로고    scopus 로고
    • Schumann RR, Leong SR, Flaggs GW, Gray PW, Wright SD, Mathison JC, Tobias PS, Ulevitch RJ: Structure and function of lipopolysaccharide binding protein. Science 199 0; 249: 14 2 9 -14 31.
    • Schumann RR, Leong SR, Flaggs GW, Gray PW, Wright SD, Mathison JC, Tobias PS, Ulevitch RJ: Structure and function of lipopolysaccharide binding protein. Science 199 0; 249: 14 2 9 -14 31.
  • 6
    • 0025166114 scopus 로고
    • CD14, a receptor for complexes of lipopolysaccharide (LPS) and LPS binding protein
    • Wright SD, Ramos RA, Tobias PS, Ulevitch RJ, Mathison JC: CD14, a receptor for complexes of lipopolysaccharide (LPS) and LPS binding protein. Science 1990; 249:1431-1433.
    • (1990) Science , vol.249 , pp. 1431-1433
    • Wright, S.D.1    Ramos, R.A.2    Tobias, P.S.3    Ulevitch, R.J.4    Mathison, J.C.5
  • 7
    • 0026989386 scopus 로고
    • Bacterial endotoxins
    • Rietschel ET, Brade H: Bacterial endotoxins. Sci Am 1992; 267:54-61.
    • (1992) Sci Am , vol.267 , pp. 54-61
    • Rietschel, E.T.1    Brade, H.2
  • 8
    • 0028064491 scopus 로고
    • Role of endotoxin in mononuclear phagocyte-mediated inflammatory responses
    • Watson RW, Redmond HP, Bouchier-Hayes D: Role of endotoxin in mononuclear phagocyte-mediated inflammatory responses. J Leukoc Biol 1994; 56: 95-103.
    • (1994) J Leukoc Biol , vol.56 , pp. 95-103
    • Watson, R.W.1    Redmond, H.P.2    Bouchier-Hayes, D.3
  • 11
  • 13
    • 0029835023 scopus 로고    scopus 로고
    • INTERSEPT: An international, multicenter, placebo-controlled trial of monoclonal antibody to human tumor necrosis factor-α in patients with sepsis. International Sepsis Trial Study Group
    • Cohen J, Carlet J: INTERSEPT: an international, multicenter, placebo-controlled trial of monoclonal antibody to human tumor necrosis factor-α in patients with sepsis. International Sepsis Trial Study Group. Crit Care Med 1996; 24: 1431-1440.
    • (1996) Crit Care Med , vol.24 , pp. 1431-1440
    • Cohen, J.1    Carlet, J.2
  • 14
    • 0025194307 scopus 로고
    • Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase
    • Tuerk C, Gold L: Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase. Science 1990; 249: 505-510.
    • (1990) Science , vol.249 , pp. 505-510
    • Tuerk, C.1    Gold, L.2
  • 15
    • 0025332385 scopus 로고
    • Selection in vitro of an RNA enzyme that specifically cleaves single-stranded DNA
    • Robertson DL, Joyce GF: Selection in vitro of an RNA enzyme that specifically cleaves single-stranded DNA. Nature 1990; 344: 467-468.
    • (1990) Nature , vol.344 , pp. 467-468
    • Robertson, D.L.1    Joyce, G.F.2
  • 16
    • 0026599465 scopus 로고
    • Selection in vitro of single-stranded DNA molecules that fold into specific ligand-binding structures
    • Ellington AD, Szostak JW: Selection in vitro of single-stranded DNA molecules that fold into specific ligand-binding structures. Nature 1992; 355:850-852.
    • (1992) Nature , vol.355 , pp. 850-852
    • Ellington, A.D.1    Szostak, J.W.2
  • 17
    • 0032860385 scopus 로고    scopus 로고
    • Aptamers: An emerging class of molecules that rival antibodies in diagnostics
    • Jayasena SD: Aptamers: an emerging class of molecules that rival antibodies in diagnostics. Clin Chem 1999; 45:1628-1650.
    • (1999) Clin Chem , vol.45 , pp. 1628-1650
    • Jayasena, S.D.1
  • 18
    • 0034691283 scopus 로고    scopus 로고
    • RNA aptamers to S-adenosylhomocysteine: Kinetic properties, divalent cation dependency, and comparison with anti-S-adenosylhomocysteine antibody
    • Gebhardt K, Shokraei A, Babaie E, Lindqvist BH: RNA aptamers to S-adenosylhomocysteine: kinetic properties, divalent cation dependency, and comparison with anti-S-adenosylhomocysteine antibody. Biochemistry 2000; 39: 7255-7265.
    • (2000) Biochemistry , vol.39 , pp. 7255-7265
    • Gebhardt, K.1    Shokraei, A.2    Babaie, E.3    Lindqvist, B.H.4
  • 20
    • 0141705727 scopus 로고    scopus 로고
    • Tandem repeats of Sushi3 peptide with enhanced LPS-binding and -neutralizing activities
    • Li C, Ng ML, Zhu Y, Ho B, Ding JL: Tandem repeats of Sushi3 peptide with enhanced LPS-binding and -neutralizing activities. Protein Eng 2003; 16:629-635.
    • (2003) Protein Eng , vol.16 , pp. 629-635
    • Li, C.1    Ng, M.L.2    Zhu, Y.3    Ho, B.4    Ding, J.L.5
  • 21
    • 0035426586 scopus 로고    scopus 로고
    • A new era in pyrogen testing
    • Ding JL, Ho B: A new era in pyrogen testing. Trends Biotechnol 2001; 19:277-281.
    • (2001) Trends Biotechnol , vol.19 , pp. 277-281
    • Ding, J.L.1    Ho, B.2
  • 23
    • 0038578608 scopus 로고    scopus 로고
    • Novel strategies for the treatment of sepsis
    • Riedemann NC, Guo RF, Ward PA: Novel strategies for the treatment of sepsis. Nat Med 2003; 9: 517-524.
    • (2003) Nat Med , vol.9 , pp. 517-524
    • Riedemann, N.C.1    Guo, R.F.2    Ward, P.A.3
  • 24
    • 0035844150 scopus 로고    scopus 로고
    • Systematic evolution of a DNA aptamer binding to rat brain tumor microvessels. Selective targeting of endothelial regulatory protein pigpen
    • Blank M, Weinschenk T, Priemer M, Schluesener H: Systematic evolution of a DNA aptamer binding to rat brain tumor microvessels. Selective targeting of endothelial regulatory protein pigpen. J Biol Chem 2001; 276:16464-16468.
    • (2001) J Biol Chem , vol.276 , pp. 16464-16468
    • Blank, M.1    Weinschenk, T.2    Priemer, M.3    Schluesener, H.4
  • 25
    • 0035914594 scopus 로고    scopus 로고
    • SELEX for tubulin affords specific T-rich DNA aptamers. Systematic evolution of ligands by exponential enrichment
    • Fukusaki E, Hasunuma T, Kajiyama S, Okazawa A, Itoh TJ, Kobayashi A: SELEX for tubulin affords specific T-rich DNA aptamers. Systematic evolution of ligands by exponential enrichment. Bioorg Med Chem Lett 2001; 11:2927-2930.
    • (2001) Bioorg Med Chem Lett , vol.11 , pp. 2927-2930
    • Fukusaki, E.1    Hasunuma, T.2    Kajiyama, S.3    Okazawa, A.4    Itoh, T.J.5    Kobayashi, A.6
  • 26
    • 0037430933 scopus 로고    scopus 로고
    • Single-stranded DNA aptamers that bind differentiated but not parental cells: Subtractive systematic evolution of ligands by exponential enrichment
    • Wang C, Zhang M, Yang G, Zhang D, Ding H, Wang H, Fan M, Shen B, Shao N: Single-stranded DNA aptamers that bind differentiated but not parental cells: subtractive systematic evolution of ligands by exponential enrichment. J Biotechnol 2003; 102: 15-22.
    • (2003) J Biotechnol , vol.102 , pp. 15-22
    • Wang, C.1    Zhang, M.2    Yang, G.3    Zhang, D.4    Ding, H.5    Wang, H.6    Fan, M.7    Shen, B.8    Shao, N.9
  • 27
    • 0032501406 scopus 로고    scopus 로고
    • Critical aggregation concentrations of Gram-negative bacterial lipopolysaccharides
    • Aurell CA, Wistrom AO: Critical aggregation concentrations of Gram-negative bacterial lipopolysaccharides. Biochem Biophys Res Commun 1998; 253:119-123.
    • (1998) Biochem Biophys Res Commun , vol.253 , pp. 119-123
    • Aurell, C.A.1    Wistrom, A.O.2
  • 29
    • 0032493654 scopus 로고    scopus 로고
    • 2'-Fluoropyrimidine RNA-based aptamers to the 165-amino acid form of vascular endothelial growth factor (VEGF165). Inhibition of receptor binding and VEGF-induced vascular permeability through interactions requiring the exon 7-encoded domain
    • Ruckman J, Green LS, Beeson J, Waugh S, Gillette WL, Henninger DD, Claesson-Welsh L, Janjic N: 2'-Fluoropyrimidine RNA-based aptamers to the 165-amino acid form of vascular endothelial growth factor (VEGF165). Inhibition of receptor binding and VEGF-induced vascular permeability through interactions requiring the exon 7-encoded domain. J Biol Chem 1998; 273: 20556-20567.
    • (1998) J Biol Chem , vol.273 , pp. 20556-20567
    • Ruckman, J.1    Green, L.S.2    Beeson, J.3    Waugh, S.4    Gillette, W.L.5    Henninger, D.D.6    Claesson-Welsh, L.7    Janjic, N.8
  • 31
    • 0035822710 scopus 로고    scopus 로고
    • SELEX selection of high-affinity oligonucleotides for bacteriophage Ff gene 5 protein
    • Wen JD, Gray CW, Gray DM: SELEX selection of high-affinity oligonucleotides for bacteriophage Ff gene 5 protein. Biochemistry 2001; 40: 9300-9310.
    • (2001) Biochemistry , vol.40 , pp. 9300-9310
    • Wen, J.D.1    Gray, C.W.2    Gray, D.M.3
  • 34
    • 0028965943 scopus 로고
    • A DNA aptamer that binds adenosine and ATP
    • Huizenga DE, Szostak JW: A DNA aptamer that binds adenosine and ATP. Biochemistry 1995; 34: 656-665.
    • (1995) Biochemistry , vol.34 , pp. 656-665
    • Huizenga, D.E.1    Szostak, J.W.2
  • 36
    • 0027434310 scopus 로고
    • Selective enrichment of RNA species for tight binding to Escherichia coli rho factor
    • Schneider D, Gold L, Platt T: Selective enrichment of RNA species for tight binding to Escherichia coli rho factor. FASEB J 1993; 7: 201-207.
    • (1993) FASEB J , vol.7 , pp. 201-207
    • Schneider, D.1    Gold, L.2    Platt, T.3
  • 37
    • 0034193030 scopus 로고    scopus 로고
    • Synthetic endotoxin-binding peptides block endotoxin-triggered TNF-αproduction by macrophages in vitro and in vivo and prevent endotoxin-mediated toxic shock
    • Dankesreiter S, Hoess A, Schneider-Mergener J, Wagner H, Miethke T: Synthetic endotoxin-binding peptides block endotoxin-triggered TNF-αproduction by macrophages in vitro and in vivo and prevent endotoxin-mediated toxic shock. J Immunol 2000; 164: 4804-4811.
    • (2000) J Immunol , vol.164 , pp. 4804-4811
    • Dankesreiter, S.1    Hoess, A.2    Schneider-Mergener, J.3    Wagner, H.4    Miethke, T.5
  • 38
    • 0026599845 scopus 로고
    • The role of bactericidal/permeability-increasing protein as a natural inhibitor of bacterial endotoxin
    • Marra MN, Wilde CG, Collins MS, Snable JL, Thornton MB, Scott RW: The role of bactericidal/permeability-increasing protein as a natural inhibitor of bacterial endotoxin. J Immunol 1992; 148: 532-537.
    • (1992) J Immunol , vol.148 , pp. 532-537
    • Marra, M.N.1    Wilde, C.G.2    Collins, M.S.3    Snable, J.L.4    Thornton, M.B.5    Scott, R.W.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.