-
1
-
-
34547845212
-
A Petri net approach to persistence analysis in chemical reaction networks
-
Lecture notes in control and information sciences, I. Queinnec, S. Tarbouriech, G. Garcia, and S.-I. Niculescu (Eds.), Berlin: Springer
-
Angeli, D., De Leenheer, P., & Sontag, E. (2007). A Petri net approach to persistence analysis in chemical reaction networks. In I. Queinnec, S. Tarbouriech, G. Garcia, & S.-I. Niculescu (Eds.), Lecture notes in control and information sciences: Vol. 357. Biology and Control Theory: Current Challenges (pp. 181-216). Berlin: Springer.
-
(2007)
Biology and Control Theory: Current Challenges
, vol.357
, pp. 181-216
-
-
Angeli, D.1
de Leenheer, P.2
Sontag, E.3
-
2
-
-
7244248616
-
Bifurcation analysis of a model of the budding yeast cell cycle
-
Battogtokh, D., & Tyson, J. J. (2004). Bifurcation analysis of a model of the budding yeast cell cycle. Chaos, 14(3), 653-661.
-
(2004)
Chaos
, vol.14
, Issue.3
, pp. 653-661
-
-
Battogtokh, D.1
Tyson, J.J.2
-
3
-
-
3343020085
-
Integrative analysis of cell cycle control in budding yeast
-
Chen, K. C., Calzone, L., Csikasz-Nagy, A., Cross, F. R., Novak, B., & Tyson, J. J. (2004). Integrative analysis of cell cycle control in budding yeast. Mol. Biol. Cell, 15(8), 3841-3862.
-
(2004)
Mol. Biol. Cell
, vol.15
, Issue.8
, pp. 3841-3862
-
-
Chen, K.C.1
Calzone, L.2
Csikasz-Nagy, A.3
Cross, F.R.4
Novak, B.5
Tyson, J.J.6
-
4
-
-
84859210411
-
-
Conradi, C., Dickenstein, A., Pérez Millán, M., & Shiu, A. (2010). Counting positive roots of polynomials with applications for biochemical systems. In preparation.
-
(2010)
Counting positive roots of polynomials with applications for biochemical systems. In preparation
-
-
Conradi, C.1
Dickenstein, A.2
Pérez, M.M.3
Shiu, A.4
-
5
-
-
37549009180
-
Multistationarity in the activation of a MAPK: Parametrizing the relevant region in parameter space
-
Conradi, C., Flockerzi, D., & Raisch, J. (2008). Multistationarity in the activation of a MAPK: Parametrizing the relevant region in parameter space. Math. Biosci., 211(1), 105-131.
-
(2008)
Math. Biosci.
, vol.211
, Issue.1
, pp. 105-131
-
-
Conradi, C.1
Flockerzi, D.2
Raisch, J.3
-
6
-
-
31144454273
-
Using Chemical Reaction Network Theory to discard a kinetic mechanism hypothesis
-
Conradi, C., Saez-Rodriguez, J., Gilles, E.-D., & Raisch, J. (2005). Using Chemical Reaction Network Theory to discard a kinetic mechanism hypothesis. IEE Proc. Syst. Biol. (now IET Systems Biology), 152(4), 243-248.
-
(2005)
IEE Proc. Syst. Biol. (Now IET Systems Biology)
, vol.152
, Issue.4
, pp. 243-248
-
-
Conradi, C.1
Saez-Rodriguez, J.2
Gilles, E.-D.3
Raisch, J.4
-
7
-
-
0003908675
-
-
New York: Springer
-
Cox, D., Little, J., & O'Shea, D. (1992). Ideals, varieties, and algorithms: an introduction to computational algebraic geometry and commutative algebra. New York: Springer.
-
(1992)
Ideals, Varieties, and Algorithms: An Introduction to Computational Algebraic Geometry and Commutative Algebra
-
-
Cox, D.1
Little, J.2
O'Shea, D.3
-
8
-
-
68549135061
-
-
Craciun, G., Dickenstein, A., Shiu, A., & Sturmfels, B. (2009). J. Symb. Comput., 44, 1551-1565.
-
(2009)
J. Symb. Comput.
, vol.44
, pp. 1551-1565
-
-
Craciun, G.1
Dickenstein, A.2
Shiu, A.3
Sturmfels, B.4
-
9
-
-
0035966288
-
Multisite phosphorylation and the countdown to S phase
-
Deshaies, R. J., & Ferrell, J. E. (2001). Multisite phosphorylation and the countdown to S phase. Cell, 107(7), 819-822.
-
(2001)
Cell
, vol.107
, Issue.7
, pp. 819-822
-
-
Deshaies, R.J.1
Ferrell, J.E.2
-
10
-
-
0000496189
-
Binomial ideals
-
Eisenbud, D., & Sturmfels, B. (1996). Binomial ideals. Duke Math. J., 84(1), 1-45.
-
(1996)
Duke Math. J.
, vol.84
, Issue.1
, pp. 1-45
-
-
Eisenbud, D.1
Sturmfels, B.2
-
11
-
-
0015482348
-
Complex balancing in general kinetic systems
-
Feinberg, M. (1972). Complex balancing in general kinetic systems. Arch. Ration. Mech. Anal., 49(3), 187-194.
-
(1972)
Arch. Ration. Mech. Anal.
, vol.49
, Issue.3
, pp. 187-194
-
-
Feinberg, M.1
-
12
-
-
0024881071
-
Necessary and sufficient conditions for detailed balancing in mass action systems of arbitrary complexity
-
Feinberg, M. (1989). Necessary and sufficient conditions for detailed balancing in mass action systems of arbitrary complexity. Chem. Eng. Sci., 44(9), 1819-1827.
-
(1989)
Chem. Eng. Sci.
, vol.44
, Issue.9
, pp. 1819-1827
-
-
Feinberg, M.1
-
13
-
-
0001364051
-
The existence and uniqueness of steady states for a class of chemical reaction networks
-
Feinberg, M. (1995a). The existence and uniqueness of steady states for a class of chemical reaction networks. Arch. Ration. Mech. Anal., 132(4), 311-370.
-
(1995)
Arch. Ration. Mech. Anal.
, vol.132
, Issue.4
, pp. 311-370
-
-
Feinberg, M.1
-
14
-
-
0000112210
-
Multiple steady states for chemical reaction networks of deficiency one
-
Feinberg, M. (1995b). Multiple steady states for chemical reaction networks of deficiency one. Arch. Ration. Mech. Anal., 132(4), 371-406.
-
(1995)
Arch. Ration. Mech. Anal.
, vol.132
, Issue.4
, pp. 371-406
-
-
Feinberg, M.1
-
15
-
-
65249097835
-
Subnetwork analysis for multistationarity in mass-action kinetics
-
012006
-
Flockerzi, D., & Conradi, C. (2008). Subnetwork analysis for multistationarity in mass-action kinetics. J. Phys. Conf. Ser., 138(1), 012006.
-
(2008)
J. Phys. Conf. Ser.
, vol.138
, Issue.1
-
-
Flockerzi, D.1
Conradi, C.2
-
16
-
-
0036183849
-
A family of sparse polynomial systems arising in chemical reaction systems
-
Gatermann, K., & Huber, B. (2002). A family of sparse polynomial systems arising in chemical reaction systems. J. Symb. Comput., 33(3), 275-305.
-
(2002)
J. Symb. Comput.
, vol.33
, Issue.3
, pp. 275-305
-
-
Gatermann, K.1
Huber, B.2
-
17
-
-
77951032238
-
NFAT pulls the strings during CD4 + T helper cell effector functions
-
Hermann-Kleiter, N., & Baier, G. (2010). NFAT pulls the strings during CD4 + T helper cell effector functions. Blood, 115(15), 2989-2997.
-
(2010)
Blood
, vol.115
, Issue.15
, pp. 2989-2997
-
-
Hermann-Kleiter, N.1
Baier, G.2
-
18
-
-
0141483523
-
Transcriptional regulation by calcium, calcineurin, and NFAT
-
Hogan, P. G., Chen, L., Nardone, J., & Rao, A. (2003). Transcriptional regulation by calcium, calcineurin, and NFAT. Genes Dev., 17(18), 2205-2232.
-
(2003)
Genes Dev.
, vol.17
, Issue.18
, pp. 2205-2232
-
-
Hogan, P.G.1
Chen, L.2
Nardone, J.3
Rao, A.4
-
19
-
-
84859210407
-
Mathematische analyse dern-fachen Phosphorylierung eines Proteins: Existenz mehrfach stationärer Zustände
-
Holstein, K. (2008). Mathematische analyse dern-fachen Phosphorylierung eines Proteins: Existenz mehrfach stationärer Zustände. Master's thesis, Diplomarbeit, Universität Magdeburg.
-
(2008)
Master's thesis, Diplomarbeit, Universität Magdeburg
-
-
Holstein, K.1
-
20
-
-
0015489310
-
Necessary and sufficient conditions for complex balancing in chemical kinetics
-
Horn, F. (1972). Necessary and sufficient conditions for complex balancing in chemical kinetics. Arch. Ration. Mech. Anal., 49(3), 172-186.
-
(1972)
Arch. Ration. Mech. Anal.
, vol.49
, Issue.3
, pp. 172-186
-
-
Horn, F.1
-
21
-
-
0015482771
-
General mass action kinetics
-
Horn, F., & Jackson, R. (1972). General mass action kinetics. Arch. Ration. Mech. Anal., 47(2), 81-116.
-
(1972)
Arch. Ration. Mech. Anal.
, vol.47
, Issue.2
, pp. 81-116
-
-
Horn, F.1
Jackson, R.2
-
22
-
-
0029790351
-
Ultrasensitivity in the Mitogen-Activated Protein Kinase Cascade
-
Huang, C.-Y. F., & Ferrell, J. E. (1996). Ultrasensitivity in the Mitogen-Activated Protein Kinase Cascade. Proc. Natl. Acad. Sci. USA, 93(19), 10078-10083.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, Issue.19
, pp. 10078-10083
-
-
Huang, C.-Y.F.1
Ferrell, J.E.2
-
23
-
-
71549133354
-
Bistability by multiple phosphorylation of regulatory proteins
-
Kapuy, O., Barik, D., Sananes, M. R.-D., Tyson, J. J., & Novák, B. (2009). Bistability by multiple phosphorylation of regulatory proteins. Prog. Biophys. Mol. Biol., 100(1-3), 47-56.
-
(2009)
Prog. Biophys. Mol. Biol.
, vol.100
, Issue.1-3
, pp. 47-56
-
-
Kapuy, O.1
Barik, D.2
Sananes, M.R.-D.3
Tyson, J.J.4
Novák, B.5
-
24
-
-
20644466433
-
NFAT proteins: key regulators of T-cell development and function
-
Macian, F. (2005). NFAT proteins: key regulators of T-cell development and function. Nat. Rev. Immunol., 5(6), 472-484.
-
(2005)
Nat. Rev. Immunol.
, vol.5
, Issue.6
, pp. 472-484
-
-
Macian, F.1
-
25
-
-
58749090027
-
The geometry of multisite phosphorylation
-
Manrai, A. K., & Gunawardena, J. (2008). The geometry of multisite phosphorylation. Biophys. J., 95(12), 5533-5543.
-
(2008)
Biophys. J.
, vol.95
, Issue.12
, pp. 5533-5543
-
-
Manrai, A.K.1
Gunawardena, J.2
-
26
-
-
0842288229
-
Signaling switches and bistability arising from multisite phosphorylation in protein kinase cascades
-
Markevich, N. I., Hoek, J. B., & Kholodenko, B. N. (2004). Signaling switches and bistability arising from multisite phosphorylation in protein kinase cascades. J. Cell Biol., 164(3), 353-359.
-
(2004)
J. Cell Biol.
, vol.164
, Issue.3
, pp. 353-359
-
-
Markevich, N.I.1
Hoek, J.B.2
Kholodenko, B.N.3
-
27
-
-
0004267646
-
-
Princeton: Princeton University Press
-
Rockafellar, R. T. (1970). Convex analysis. Princeton: Princeton University Press.
-
(1970)
Convex Analysis
-
-
Rockafellar, R.T.1
-
28
-
-
0037417803
-
Hysteresis drives cell-cycle transitions in xenopus laevis egg extracts
-
Sha, W., Moore, J., Chen, K., Lassaletta, A. D., Yi, C.-S., Tyson, J. J., & Sible, J. C. (2003). Hysteresis drives cell-cycle transitions in xenopus laevis egg extracts. Proc. Natl. Acad. Sci. USA, 100(3), 975-980.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, Issue.3
, pp. 975-980
-
-
Sha, W.1
Moore, J.2
Chen, K.3
Lassaletta, A.D.4
Yi, C.-S.5
Tyson, J.J.6
Sible, J.C.7
-
29
-
-
34547204160
-
The MEK/ERK cascade: From signaling specificity to diverse functions
-
Shaul, Y. D., & Seger, R. (2007). The MEK/ERK cascade: From signaling specificity to diverse functions. Biochim. Biophys. Acta, 1773(8), 1213-1226.
-
(2007)
Biochim. Biophys. Acta
, vol.1773
, Issue.8
, pp. 1213-1226
-
-
Shaul, Y.D.1
Seger, R.2
-
30
-
-
77949398351
-
Structural sources of robustness in biochemical reaction networks
-
Shinar, G., & Feinberg, M. (2010). Structural sources of robustness in biochemical reaction networks. Science, 327(5971), 1389-1391.
-
(2010)
Science
, vol.327
, Issue.5971
, pp. 1389-1391
-
-
Shinar, G.1
Feinberg, M.2
-
32
-
-
0007712725
-
Multistationarity, the basis of cell differentiation and memory.I.Structural conditions of multistationarity and other nontrivial behavior
-
Thomas, R., & Kaufman, M. (2001a). Multistationarity, the basis of cell differentiation and memory. I. Structural conditions of multistationarity and other nontrivial behavior. Chaos, 11(1), 170-179.
-
(2001)
Chaos
, vol.11
, Issue.1
, pp. 170-179
-
-
Thomas, R.1
Kaufman, M.2
-
33
-
-
0035582202
-
Multistationarity, the basis of cell differentiation and memory.II.Logical analysis of regulatory networks in terms of feedback circuits
-
Thomas, R., & Kaufman, M. (2001b). Multistationarity, the basis of cell differentiation and memory. II. Logical analysis of regulatory networks in terms of feedback circuits. Chaos, 11(1), 180-195.
-
(2001)
Chaos
, vol.11
, Issue.1
, pp. 180-195
-
-
Thomas, R.1
Kaufman, M.2
-
34
-
-
70350575331
-
The rational parameterisation theorem for multisite post-translational modification systems
-
Thomson, M., & Gunawardena, J. (2009a). The rational parameterisation theorem for multisite post-translational modification systems. J. Theor. Biol., 261(4), 626-636.
-
(2009)
J. Theor. Biol.
, vol.261
, Issue.4
, pp. 626-636
-
-
Thomson, M.1
Gunawardena, J.2
-
35
-
-
67650360968
-
Unlimited multistability in multisite phosphorylation systems
-
Thomson, M., & Gunawardena, J. (2009b). Unlimited multistability in multisite phosphorylation systems. Nature, 460(7252), 274-277.
-
(2009)
Nature
, vol.460
, Issue.7252
, pp. 274-277
-
-
Thomson, M.1
Gunawardena, J.2
-
36
-
-
42149099412
-
On the number of steady states in a multiple futile cycle
-
Wang, L., & Sontag, E. (2008). On the number of steady states in a multiple futile cycle. J. Math. Biol., 57(1), 29-52.
-
(2008)
J. Math. Biol.
, vol.57
, Issue.1
, pp. 29-52
-
-
Wang, L.1
Sontag, E.2
|