-
1
-
-
65249134756
-
-
Matcont - a Matlab continuation package, http://www.matcont.ugent.be/
-
-
-
-
2
-
-
27144517984
-
Systems biology: Interlinked fast and slow positive feedback loops drive reliable cell decisions
-
DOI 10.1126/science.1113834
-
Onn Brandman, James E Ferrell, Rong Li and Tobias Meyer 2005 Interlinked fast and slow positive feedback loops drive reliable cell decisions Science 310 (5747) 496-498 (Pubitemid 41507964)
-
(2005)
Science
, vol.310
, Issue.5747
, pp. 496-498
-
-
Brandman, O.1
Ferrell Jr., J.E.2
Li, R.3
Meyer, T.4
-
3
-
-
0023714694
-
Stoichiometric network analysis
-
Bruce L Clarke 1988 Stoichiometric network analysis Cell Biophysics 12 237-253
-
(1988)
Cell Biophysics
, vol.12
, pp. 237-253
-
-
Bruce, L.1
Clarke2
-
5
-
-
37549009180
-
Multistationarity in the activation of a MAPK: Parametrizing the relevant region in parameter space
-
DOI 10.1016/j.mbs.2007.10.004, PII S0025556407002076
-
Carsten Conradi, Dietrich Flockerzi and Jörg Raisch 2008 Multistationarity in the activation of an MAPK: parametrizing the relevant region in parameter space Math. Biosciences 211 (1) 105-131 (Pubitemid 50009477)
-
(2008)
Mathematical Biosciences
, vol.211
, Issue.1
, pp. 105-131
-
-
Conradi, C.1
Flockerzi, D.2
Raisch, J.3
-
6
-
-
37649013307
-
Subnetwork analysis reveals dynamic features of complex (bio)chemical networks
-
Carsten Conradi, Dietrich Flockerzi, Jörg Raisch and Jörg Stelling 2007 Subnetwork analysis reveals dynamic features of complex (bio)chemical networks PNAS 104 (49) 19175-19180
-
(2007)
PNAS
, vol.104
, Issue.49
, pp. 19175-19180
-
-
Carsten Conradi, D.1
-
7
-
-
31144454273
-
Using chemical reaction network theory to discard a kinetic mechanism hypothesis
-
DOI 10.1049/ip-syb:20050045
-
Carsten Conradi, Julio Saez-Rodriguez, Ernst-Dieter Gilles and Jörg Raisch 2005 Using Chemical Reaction Network Theory to discard a kinetic mechanism hypothesis IET Syst. Biology 152 (4) 243-248 (Pubitemid 43125142)
-
(2005)
IEE Proceedings Systems Biology
, vol.152
, Issue.4
, pp. 243-248
-
-
Conradi, C.1
Saez-Rodriguez, J.2
Gilles, E.-D.3
Raisch, J.4
-
10
-
-
0034689637
-
How catalytic mechanisms reveal themselves in multiple steady-state data: I. Basic principles
-
Phillip Ellison and Martin Feinberg 2000 How catalytic mechanisms reveal themselves in multiple steady-state data: I. Basic principles J. Molecular Catalysis A: Chem. 154 (1-2) 155-167
-
(2000)
J. Molecular Catalysis A: Chem.
, vol.154
, Issue.1-2
, pp. 155-167
-
-
Ellison And Martin Feinberg, P.1
-
12
-
-
0023531427
-
CHEMICAL REACTION NETWORK STRUCTURE and the STABILITY of COMPLEX ISOTHERMAL REACTORS - I. the DEFICIENCY ZERO and DEFICIENCY ONE THEOREMS.
-
DOI 10.1016/0009-2509(87)80099-4
-
Martin Feinberg 1987 Chemical reaction network structure and the stability of complex isothermal reactors - I. The Deficiency Zero and Deficiency One Theorems Chem. Eng. Sci. 42 (10) 2229-2268 (Pubitemid 18529434)
-
(1987)
Chemical Engineering Science
, vol.42
, Issue.10
, pp. 2229-2268
-
-
Martin, F.1
-
13
-
-
0023842283
-
CHEMICAL REACTION NEWTORK STRUCTURE and the STABILITY of COMPLEX ISOTHERMAL REACTORS - II. MULTIPLE STEADY STATES for NETWORKS of DEFICIENCY ONE.
-
DOI 10.1016/0009-2509(88)87122-7
-
Martin Feinberg 1988 Chemical reaction network structure and the stability of complex isothermal reactors - II. Multiple steady states for networks of Deficiency One Chem. Eng. Sci. 43 (1) 1-25 (Pubitemid 18549697)
-
(1988)
Chemical Engineering Science
, vol.43
, Issue.1
, pp. 1-25
-
-
Martin, F.1
-
14
-
-
0001364051
-
The Existence and Uniqueness of Steady States for a Class of Chemical Reaction Networks
-
Martin Feinberg 1995 The existence and uniqueness of steady states for a class of chemical reaction networks Archive for Rational Mechanics Analysis 132 (4) 311-370 (Pubitemid 126013836)
-
(1995)
Archive for Rational Mechanics and Analysis
, vol.132
, Issue.4
, pp. 311-370
-
-
Feinberg, M.1
-
15
-
-
0000112210
-
Multiple Steady States for Chemical Reaction Networks of Deficiency One
-
Martin Feinberg 1995 Multiple steady states for chemical reaction networks of Deficiency One Archive for Rational Mechanics Analysis 132 (4) 371-406 (Pubitemid 126013837)
-
(1995)
Archive for Rational Mechanics and Analysis
, vol.132
, Issue.4
, pp. 371-406
-
-
Feinberg, M.1
-
17
-
-
34250627892
-
Geometric Singular Perturbation Theory for ODEs
-
Fenichel N 1979 Geometric Singular Perturbation Theory for ODEs J. Differ. Equ. 31 53-98
-
(1979)
J. Differ. Equ.
, vol.31
, Issue.1
, pp. 53-98
-
-
Fenichel, N.1
-
18
-
-
13244292328
-
Computation of elementary modes: A unifying framework and the new binary approach
-
DOI 10.1186/1471-2105-5-175
-
Julien Gagneur and Steffen Klamt 2004 Computation of elementary modes: a unifying framework and the new binary approach BMC Bioinformatics 5 (Pubitemid 40195334)
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 175
-
-
Gagneur, J.1
Klamt, S.2
-
19
-
-
11244271554
-
Bernstein's second theorem and viro's method for sparse polynomial systems in chemistry
-
Karin Gatermann and Matthias Wolfrum 2005 Bernstein's second theorem and viro's method for sparse polynomial systems in chemistry Adv.Appl. Math. 34 (2) 252-294
-
(2005)
Adv.Appl. Math.
, vol.34
, Issue.2
, pp. 252-294
-
-
Gatermann And Matthias Wolfrum, K.1
-
21
-
-
0036789922
-
Untangling the wires: A strategy to trace functional interactions in signaling and gene networks
-
Boris N Kholodenko, Anatoly Kiyatkin, Frank J Bruggeman, Eduardo Sontag, Hans V Westerhoff and Jan B Hoek 2002 Untangling the wires: a strategy to trace functional interactions in signaling and gene networks Proc Natl Acad Sci U S A 99 (20) 12841-12846
-
(2002)
Proc Natl Acad Sci U
, vol.99
, Issue.20
, pp. 12841-12846
-
-
Kholodenko, B.N.1
Kiyatkin, A.2
Bruggeman, F.J.3
Sontag, E.4
Westerhoff, H.V.5
Hoek, J.B.6
-
22
-
-
0031737085
-
Regulation of Cdc28 cyclin-dependent protein kinase activity during the cell cycle of the yeast Saccharomyces cerevisiae
-
Mendenhall M D and A E Hodge 1998 Regulation of Cdc28 cyclin-dependent protein kinase activity during the cell cycle of the yeast Saccharomyces cerevisiae Microbiol Mol Biol Rev 62 (4) 1191-1243 (Pubitemid 28558297)
-
(1998)
Microbiology and Molecular Biology Reviews
, vol.62
, Issue.4
, pp. 1191-1243
-
-
Mendenhall, M.D.1
Hodge, A.E.2
-
23
-
-
0036301511
-
Robustness as a measure of plausibility in models of biochemical networks
-
DOI 10.1006/jtbi.2002.2537
-
Mineo Morohashi, Amanda E Winn, Mark T Borisuk, Hamid Bolouri, John Doyle and Hiroaki Kitano 2002 Robustness as a measure of plausibility in models of biochemical networks J Theor Biol 216 (l) 19-30 (Pubitemid 34748054)
-
(2002)
Journal of Theoretical Biology
, vol.216
, Issue.1
, pp. 19-30
-
-
Morohashi, M.1
Winn, A.E.2
Borisuk, M.T.3
Bolouri, H.4
Doyle, J.5
Kitano, H.6
-
24
-
-
9544253891
-
Genome-scale models of microbial cells: Evaluating the consequences of constraints
-
DOI 10.1038/nrmicro1023
-
Nathan D Price, Jennifer L Reed and Bernhard Palsson 2004 Genome-scale models of microbial cells: evaluating the consequences of constraints Nat Rev Microbiol 2 (11) 886-897 (Pubitemid 39567269)
-
(2004)
Nature Reviews Microbiology
, vol.2
, Issue.11
, pp. 886-897
-
-
Price, N.D.1
Reed, J.L.2
Palsson, B.O.3
-
26
-
-
0036691976
-
Reaction routes in biochemical reaction systems: Algebraic properties, validated calculation procedure and example from nucleotide metabolism
-
DOI 10.1007/s002850200143
-
Schuster S, C Hilgetag, J H Woods and D A Fell 2002 Reaction routes in biochemical reaction systems: Algebraic properties, validated calculation procedure and example from nucleotide metabolism J. Math. Biology 45 (2) 153-181 (Pubitemid 44200164)
-
(2002)
Journal of Mathematical Biology
, vol.45
, Issue.2
, pp. 153-181
-
-
Schuster, S.1
Hilgetag, C.2
Woods, J.H.3
Fell, P.A.4
-
27
-
-
37649001073
-
Understanding the roadmap of metabolism by pathway analysis
-
Stefan Schuster, Axel von Kamp and Mikhail Pachkov 2007 Understanding the roadmap of metabolism by pathway analysis Methods Mol Biol 358 199-226
-
(2007)
Methods Mol Biol
, vol.358
, pp. 199-226
-
-
Schuster, S.1
Von Kamp, A.2
Pachkov, M.3
-
28
-
-
0036578795
-
Network motifs in the transcriptional regulation network of Escherichia coli
-
Shai S Shen-Orr, Ron Milo, Shmoolik Mangan and Uri Alon 2002 Network motifs in the transcriptional regulation network of Escherichia coli Nat Genet 31 (1) 64-68
-
(2002)
Nat Genet
, vol.31
, Issue.1
, pp. 64-68
-
-
Shen-Orr, S.S.1
Milo, R.2
Mangan, S.3
Alon, U.4
-
29
-
-
7744230024
-
Graphic requirements for multistationarity
-
Christophe Soulé 2003 Graphic requirements for multistationarity ComPlexUs 1 (3) 123-133
-
(2003)
ComPlexUs
, vol.1
, Issue.3
, pp. 123-133
-
-
Soulé, C.1
-
31
-
-
0007712725
-
Multistationarity, the basis of cell differentiation and memory. I. Structural conditions of multistationarity and other nontrivial behavior
-
DOI 10.1063/1.1350439
-
Thomas R and M Kaufman 2001 Multistationarity, the basis of cell differentiation and memory. i. structural conditions of multistationarity and other nontrivial behavior Chaos 11 (1) 170-179 (Pubitemid 33245071)
-
(2001)
Chaos
, vol.11
, Issue.1
, pp. 170-179
-
-
Thomas, R.1
Kaufman, M.2
-
32
-
-
0037376655
-
Sniffers, buzzers, toggles and blinkers: Dynamics of regulatory and signaling pathways in the cell
-
DOI 10.1016/S0955-0674(03)00017-6
-
John J Tyson, Katherine C Chen and Bela Novak 2003 Sniffers, buzzers, toggles and blinkers: dynamics of regulatory and signaling pathways in the cell Curr Opin Cell Biol 15 (2) 221-231 (Pubitemid 36332198)
-
(2003)
Current Opinion in Cell Biology
, vol.15
, Issue.2
, pp. 221-231
-
-
Tyson, J.J.1
Chen, K.C.2
Novak, B.3
|