-
1
-
-
37549013303
-
-
Matcont - a Matlab continuation package, http://www.matcont.ugent.be/.
-
-
-
-
2
-
-
0033555859
-
Emergent properties of networks of biological signaling pathways
-
Bhalla U.S., and Iyengar R. Emergent properties of networks of biological signaling pathways. Science 283 5400 (1999) 381
-
(1999)
Science
, vol.283
, Issue.5400
, pp. 381
-
-
Bhalla, U.S.1
Iyengar, R.2
-
3
-
-
0009952303
-
Robustness of the bistable behavior of a biological signaling feedback loop
-
Bhalla U.S., and Iyengar R. Robustness of the bistable behavior of a biological signaling feedback loop. Chaos 11 1 (2001) 221
-
(2001)
Chaos
, vol.11
, Issue.1
, pp. 221
-
-
Bhalla, U.S.1
Iyengar, R.2
-
4
-
-
0037047611
-
MAP kinase phosphatase as a locus of flexibility in a mitogen-activated protein kinase signaling network
-
Bhalla U.S., Ram P.T., and Iyengar R. MAP kinase phosphatase as a locus of flexibility in a mitogen-activated protein kinase signaling network. Science 297 5583 (2002) 1018
-
(2002)
Science
, vol.297
, Issue.5583
, pp. 1018
-
-
Bhalla, U.S.1
Ram, P.T.2
Iyengar, R.3
-
5
-
-
17644446947
-
How robust are switches in intracellular signaling cascades?
-
Blüthgen N., and Herzel H. How robust are switches in intracellular signaling cascades?. J. Theor. Biol. 225 3 (2003) 293
-
(2003)
J. Theor. Biol.
, vol.225
, Issue.3
, pp. 293
-
-
Blüthgen, N.1
Herzel, H.2
-
6
-
-
31144454273
-
Using Chemical Reaction Network Theory to discard a kinetic mechanism hypothesis
-
Conradi C., Saez-Rodriguez J., Gilles E.-D., and Raisch J. Using Chemical Reaction Network Theory to discard a kinetic mechanism hypothesis. IEE Proc. Syst. Biol. 152 4 (2005) 243
-
(2005)
IEE Proc. Syst. Biol.
, vol.152
, Issue.4
, pp. 243
-
-
Conradi, C.1
Saez-Rodriguez, J.2
Gilles, E.-D.3
Raisch, J.4
-
7
-
-
37549066663
-
-
Carsten Conradi, Julio Saez-Rodriguez, Ernst-Dieter Gilles, Jörg Raisch, Chemical Reaction Network Theory ... a tool for systems biology, in: Proceedings of the 5th MATHMOD, 2006.
-
-
-
-
8
-
-
26844525729
-
The "robust yet fragile nature" of the Internet
-
Doyle J.C., Alderson D.L., Li L., Low S., Roughan M., Shalunov S., Tanaka R., and Willinger W. The "robust yet fragile nature" of the Internet. PNAS 102 41 (2005) 14497
-
(2005)
PNAS
, vol.102
, Issue.41
, pp. 14497
-
-
Doyle, J.C.1
Alderson, D.L.2
Li, L.3
Low, S.4
Roughan, M.5
Shalunov, S.6
Tanaka, R.7
Willinger, W.8
-
9
-
-
14544280668
-
Surviving heat shock: control strategies for robustness and performance
-
El-Samad H., Kurata H., Doyle J.C., Gross C.A., and Khammash M. Surviving heat shock: control strategies for robustness and performance. PNAS 102 8 (2005) 2736
-
(2005)
PNAS
, vol.102
, Issue.8
, pp. 2736
-
-
El-Samad, H.1
Kurata, H.2
Doyle, J.C.3
Gross, C.A.4
Khammash, M.5
-
10
-
-
37549000124
-
-
Phillipp Ellison, The Advanced Deficiency Algorithm and its applications to mechanism discrimination, Ph.D. thesis, The University of Rochester, 1998.
-
-
-
-
11
-
-
0023842283
-
Chemical reaction network structure and the stability of complex isothermal reactors - II. Multiple steady states for networks of deficiency one
-
Feinberg M. Chemical reaction network structure and the stability of complex isothermal reactors - II. Multiple steady states for networks of deficiency one. Chem. Eng. Sci. 43 1 (1988) 1
-
(1988)
Chem. Eng. Sci.
, vol.43
, Issue.1
, pp. 1
-
-
Feinberg, M.1
-
12
-
-
0000112210
-
Multiple steady states for chemical reaction networks of Deficiency One
-
Feinberg M. Multiple steady states for chemical reaction networks of Deficiency One. Arch. Ration. Mech. Anal. 132 4 (1995) 371
-
(1995)
Arch. Ration. Mech. Anal.
, vol.132
, Issue.4
, pp. 371
-
-
Feinberg, M.1
-
13
-
-
37549070681
-
-
Martin Feinberg, Phillip Ellison. The chemical reaction network toolbox. http//www.chbmeng.ohio-state.edu/feinberg/crnt.
-
-
-
-
14
-
-
0036532226
-
Self-perpetuating states in signal transduction: positive feedback, double-negative feedback and bistability
-
Ferrell J.E. Self-perpetuating states in signal transduction: positive feedback, double-negative feedback and bistability. Curr. Opin. Cell Biol. 14 2 (2002) 140
-
(2002)
Curr. Opin. Cell Biol.
, vol.14
, Issue.2
, pp. 140
-
-
Ferrell, J.E.1
-
15
-
-
13244292328
-
Computation of elementary modes: a unifying framework and the new binary approach
-
Gagneur J., and Klamt S. Computation of elementary modes: a unifying framework and the new binary approach. BMC Bioinform. 5 (2004)
-
(2004)
BMC Bioinform.
, vol.5
-
-
Gagneur, J.1
Klamt, S.2
-
16
-
-
0036183849
-
A family of sparse polynomial systems arising in chemical reaction systems
-
Gatermann K., and Huber B. A family of sparse polynomial systems arising in chemical reaction systems. J. Symbolic Comput. 33 3 (2002) 275
-
(2002)
J. Symbolic Comput.
, vol.33
, Issue.3
, pp. 275
-
-
Gatermann, K.1
Huber, B.2
-
17
-
-
11244271554
-
Bernstein's second theorem and Viro's method for sparse polynomial systems in chemistry
-
Gatermann K., and Wolfrum M. Bernstein's second theorem and Viro's method for sparse polynomial systems in chemistry. Adv. Appl. Math. 34 2 (2005) 252
-
(2005)
Adv. Appl. Math.
, vol.34
, Issue.2
, pp. 252
-
-
Gatermann, K.1
Wolfrum, M.2
-
18
-
-
0029790351
-
Ultrasensitivity in the mitogen-activated protein kinase cascade
-
Huang C.-Y.F., and Ferrell Jr. J.E. Ultrasensitivity in the mitogen-activated protein kinase cascade. PNAS 93 19 (1996) 10078
-
(1996)
PNAS
, vol.93
, Issue.19
, pp. 10078
-
-
Huang, C.-Y.F.1
Ferrell Jr., J.E.2
-
19
-
-
0034019315
-
Negative feedback and ultrasensitivity can bring about oscillations in the mitogen-activated protein kinase cascades
-
Kholodenko B.N. Negative feedback and ultrasensitivity can bring about oscillations in the mitogen-activated protein kinase cascades. Eur. J. Biochem. 267 6 (2000) 1583
-
(2000)
Eur. J. Biochem.
, vol.267
, Issue.6
, pp. 1583
-
-
Kholodenko, B.N.1
-
20
-
-
33644524741
-
Cell-signalling dynamics in time and space
-
Kholodenko B.N. Cell-signalling dynamics in time and space. Nat. Rev. Mol. Cell Biol. 7 (2006) 165
-
(2006)
Nat. Rev. Mol. Cell Biol.
, vol.7
, pp. 165
-
-
Kholodenko, B.N.1
-
21
-
-
7644238181
-
Biological robustness
-
Kitano H. Biological robustness. Nat. Rev. Genet. 5 11 (2004) 826
-
(2004)
Nat. Rev. Genet.
, vol.5
, Issue.11
, pp. 826
-
-
Kitano, H.1
-
22
-
-
34848887670
-
-
Stefan Legewie, Birgit Schoeberl, Nils Blüthgen, Hanspeter Herzel, Competing docking interactions can bring about bistability in the MAPK cascade. Biophys. J., 2007, biophysj.107.109132.
-
-
-
-
23
-
-
0842288229
-
Signaling switches and bistability arising from multisite phosphorylation in protein kinase cascades
-
Markevich N.I., Hoek J.B., and Kholodenko B.N. Signaling switches and bistability arising from multisite phosphorylation in protein kinase cascades. J. Cell Biol. 164 3 (2004) 353
-
(2004)
J. Cell Biol.
, vol.164
, Issue.3
, pp. 353
-
-
Markevich, N.I.1
Hoek, J.B.2
Kholodenko, B.N.3
-
24
-
-
0036301511
-
Robustness as a measure of plausibility in models of biochemical networks
-
Morohashi M., Winn A.E., Borisuk M.T., Bolouri H., Doyle J., and Kitano H. Robustness as a measure of plausibility in models of biochemical networks. J. Theor. Biol. 216 1 (2002) 19
-
(2002)
J. Theor. Biol.
, vol.216
, Issue.1
, pp. 19
-
-
Morohashi, M.1
Winn, A.E.2
Borisuk, M.T.3
Bolouri, H.4
Doyle, J.5
Kitano, H.6
-
25
-
-
33747429073
-
Bistability from double phosphorylation in signal transduction
-
Ortega F., Garcé J.L., Mas F., Kholodenko B.N., and Cascante M. Bistability from double phosphorylation in signal transduction. FEBS J. 273 17 (2006) 3915
-
(2006)
FEBS J.
, vol.273
, Issue.17
, pp. 3915
-
-
Ortega, F.1
Garcé, J.L.2
Mas, F.3
Kholodenko, B.N.4
Cascante, M.5
-
28
-
-
0036691976
-
Reaction routes in biochemical reaction systems: algebraic properties, validated calculation procedure and example from nucleotide metabolism
-
Schuster S., Hilgetag C., Woods J.H., and Fell D.A. Reaction routes in biochemical reaction systems: algebraic properties, validated calculation procedure and example from nucleotide metabolism. J. Math. Biol. 45 2 (2002) 153
-
(2002)
J. Math. Biol.
, vol.45
, Issue.2
, pp. 153
-
-
Schuster, S.1
Hilgetag, C.2
Woods, J.H.3
Fell, D.A.4
-
29
-
-
0029011218
-
The MAPK signaling cascade
-
Seger R., and Krebs E.G. The MAPK signaling cascade. FASEB J. 9 (1995) 726
-
(1995)
FASEB J.
, vol.9
, pp. 726
-
-
Seger, R.1
Krebs, E.G.2
-
30
-
-
0035390982
-
Structure and stability of certain chemical networks and applications to the kinetic proofreading model of T-cell receptor signal transduction
-
Sontag E.D. Structure and stability of certain chemical networks and applications to the kinetic proofreading model of T-cell receptor signal transduction. IEEE Trans. Automatic Contr. 46 7 (2001) 1028
-
(2001)
IEEE Trans. Automatic Contr.
, vol.46
, Issue.7
, pp. 1028
-
-
Sontag, E.D.1
-
31
-
-
4444322221
-
Robustness properties of circadian clock architectures
-
Stelling J., Gilles E.-D., and Doyle F.J. Robustness properties of circadian clock architectures. PNAS 101 36 (2004) 13210
-
(2004)
PNAS
, vol.101
, Issue.36
, pp. 13210
-
-
Stelling, J.1
Gilles, E.-D.2
Doyle, F.J.3
-
32
-
-
4544346660
-
Robustness of cellular functions
-
Stelling J., Sauer U., Szallasi Z., Doyle F.J., and Doyle J. Robustness of cellular functions. Cell 118 6 (2004) 675
-
(2004)
Cell
, vol.118
, Issue.6
, pp. 675
-
-
Stelling, J.1
Sauer, U.2
Szallasi, Z.3
Doyle, F.J.4
Doyle, J.5
|