-
1
-
-
0034660322
-
Protein function in the post-genomic era
-
D. Eisenberg, E.M. Marcotte, I. Xenarios, and T.O. Yeates, "Protein Function in the Post-Genomic Era," Nature, vol. 405, no. 6788, pp. 823-826, 2000.
-
(2000)
Nature
, vol.405
, Issue.6788
, pp. 823-826
-
-
Eisenberg, D.1
Marcotte, E.M.2
Xenarios, I.3
Yeates, T.O.4
-
2
-
-
0035836765
-
A comprehensive two-hybrid analysis to explore the yeast protein interactome
-
DOI 10.1073/pnas.061034498
-
T. Ito, T. Chiba, R. Ozawa, M. Yoshida, M. Hattori, and Y. Sakaki, "A Comprehensive Two-Hybrid Analysis to Explore the Yeast Protein Interactome," Proc. Nat'l Academy of Sciences USA, vol. 98, no. 8, pp. 4569-4574, 2001. (Pubitemid 32295017)
-
(2001)
Proceedings of the National Academy of Sciences of the United States of America
, vol.98
, Issue.8
, pp. 4569-4574
-
-
Ito, T.1
Chiba, T.2
Ozawa, R.3
Yoshida, M.4
Hattori, M.5
Sakaki, Y.6
-
3
-
-
0037435030
-
Mass spectrometry-based proteomics
-
DOI 10.1038/nature01511
-
R. Aebersold and M. Mann, "Mass Spectrometry-Based Proteomics," Nature, vol. 422, no. 6928, pp. 198-207, 2003. (Pubitemid 36362757)
-
(2003)
Nature
, vol.422
, Issue.6928
, pp. 198-207
-
-
Aebersold, R.1
Mann, M.2
-
4
-
-
0742305866
-
Network biology: Understanding the cell's functional organization
-
DOI 10.1038/nrg1272
-
A.L. Barabási and Z.N. Oltvai, "Network Biology: Understanding the Cell's Functional Organization," Nature Rev. Genetics, vol. 5, no. 2, pp. 101-113, 2004. (Pubitemid 38160277)
-
(2004)
Nature Reviews Genetics
, vol.5
, Issue.2
, pp. 101-113
-
-
Barabasi, A.-L.1
Oltvai, Z.N.2
-
5
-
-
0033669189
-
A network of protein- protein interactions in yeast
-
B. Schwikowski, P. Uetz, and S. Fields, "A Network of Protein- Protein Interactions in Yeast," Nature Biotechnology, vol. 18, no. 12, pp. 1257-1261, 2000.
-
(2000)
Nature Biotechnology
, vol.18
, Issue.12
, pp. 1257-1261
-
-
Schwikowski, B.1
Uetz, P.2
Fields, S.3
-
6
-
-
0038699587
-
Global protein function prediction from protein-protein interaction networks
-
DOI 10.1038/nbt825
-
A. Vazquez, A. Flammini, A. Maritan, and A. Vespignani, "Global Protein Function Prediction from Protein-Protein Interaction Networks," Nature Biotechnology, vol. 21, no. 6, pp. 697- 700, 2003. (Pubitemid 36638099)
-
(2003)
Nature Biotechnology
, vol.21
, Issue.6
, pp. 697-700
-
-
Vazquez, A.1
Flammini, A.2
Maritan, A.3
Vespignani, A.4
-
7
-
-
1542327694
-
Whole-genome annotation by using evidence integration in functional-linkage networks
-
DOI 10.1073/pnas.0307326101
-
U. Karaoz, T.M. Murali, S. Letovsky, Y. Zheng, C. Ding, C.R. Cantor, and S. Kasif, "Whole-Genome Annotation by Using Evidence Integration in Functional-Linkage Networks," Proc. Nat'l Academy of Sciences USA, vol. 101, no. 9, pp. 2888-2893, 2004. (Pubitemid 38327706)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.9
, pp. 2888-2893
-
-
Karaoz, U.1
Murali, T.M.2
Letovsky, S.3
Zheng, Y.4
Ding, C.5
Cantor, C.R.6
Kasif, S.7
-
8
-
-
2342435295
-
Mapping gene ontology to proteins based on protein-protein interaction data
-
DOI 10.1093/bioinformatics/btg500
-
M. Deng, Z. Tu, F. Sun, and T. Chen, "Mapping Gene Ontology to Proteins Based on Protein-Protein Interaction Data," Bioinformatics, vol. 20, no. 6, pp. 895-902, 2004. (Pubitemid 38559730)
-
(2004)
Bioinformatics
, vol.20
, Issue.6
, pp. 895-902
-
-
Deng, M.1
Tu, Z.2
Sun, F.3
Chen, T.4
-
9
-
-
29144442904
-
Whole-proteome prediction of protein function via graph- theoretic analysis of interaction maps
-
E. Nabieva, K. Jim, A. Agarwal, B. Chazelle, and M. Singh, "Whole-Proteome Prediction of Protein Function via Graph- Theoretic Analysis of Interaction Maps," Bioinformatics, vol. 21, no. 1, pp. 302-310, 2005.
-
(2005)
Bioinformatics
, vol.21
, Issue.1
, pp. 302-310
-
-
Nabieva, E.1
Jim, K.2
Agarwal, A.3
Chazelle, B.4
Singh, M.5
-
10
-
-
33745619564
-
Exploiting indirect neighbours and topological weight to predict protein function from protein-protein interactions
-
DOI 10.1093/bioinformatics/btl145
-
H.N. Chua, W.K. Sung, and L. Wong, "Exploiting Indirect Neighbours and Topological Weight to Predict Proteinc Function from Protein-Protein Interactions," Bioinformatics, vol. 22, no. 13, pp. 1623-1630, 2006. (Pubitemid 43985296)
-
(2006)
Bioinformatics
, vol.22
, Issue.13
, pp. 1623-1630
-
-
Chua, H.N.1
Sung, W.-K.2
Wong, L.3
-
11
-
-
47549107689
-
Genemania: A real-time multiple association network integration algorithm for predicting gene function
-
S. Mostafavi, D. Ray, D.W. Farley, C. Grouios, and Q. Morris, "GeneMANIA: A Real-Time Multiple Association Network Integration Algorithm for Predicting Gene Function," Genome Biology, vol. 9, no. Suppl 1, p. S4, 2008.
-
(2008)
Genome Biology
, vol.9
, Issue.SUPPL. 1
-
-
Mostafavi, S.1
Ray, D.2
Farley, D.W.3
Grouios, C.4
Morris, Q.5
-
12
-
-
76849104444
-
On the importance of comprehensible classification models for protein function prediction
-
Jan -Mar
-
A.A. Freitas, D.C. Wieser, and R. Apweiler, "On the Importance of Comprehensible Classification Models for Protein Function Prediction," IEEE/ACM Trans. Computational Biology and Bioinformatics, vol. 7, no. 1, pp. 172-182, Jan.-Mar. 2010.
-
(2010)
IEEE/ ACM Trans. Computational Biology and Bioinformatics
, vol.7
, Issue.1
, pp. 172-182
-
-
Freitas, A.A.1
Wieser, D.C.2
Apweiler, R.3
-
13
-
-
76849087123
-
Predicting protein function by frequent functional association pattern mining in protein interaction networks
-
Jan
-
Y.R. Cho and A. Zhang, "Predicting Protein Function by Frequent Functional Association Pattern Mining in Protein Interaction Networks," IEEE Trans. Information Technology in Biomedicine, vol. 14, no. 1, pp. 30-36, Jan. 2010.
-
(2010)
IEEE Trans. Information Technology in Biomedicine
, vol.14
, Issue.1
, pp. 30-36
-
-
Cho, Y.R.1
Zhang, A.2
-
14
-
-
77952243547
-
Molecular function prediction using neighborhood features
-
Apr-June
-
P. Bogdanov and A.K. Singh, "Molecular Function Prediction Using Neighborhood Features," IEEE/ACM Trans. Computational Biology and Bioinformatics, vol. 7, no. 2, pp. 208-217, Apr.-June 2010.
-
(2010)
IEEE/ ACM Trans. Computational Biology and Bioinformatics
, vol.7
, Issue.2
, pp. 208-217
-
-
Bogdanov, P.1
Singh, A.K.2
-
15
-
-
79952835504
-
Prediction of protein functions with gene ontology and inter-species protein homology data
-
May/June
-
A. Mitrofanova, V. Pavlovic, and B. Mishra, "Prediction of Protein Functions with Gene Ontology and Inter-Species Protein Homology Data," IEEE/ACM Trans. Computational Biology and Bioinformatics, vol. 8, no. 3, pp. 775-784, May/June 2011.
-
(2011)
IEEE/ ACM Trans. Computational Biology and Bioinformatics
, vol.8
, Issue.3
, pp. 775-784
-
-
Mitrofanova, A.1
Pavlovic, V.2
Mishra, B.3
-
16
-
-
79551655554
-
On position-specific scoring matrix for protein function prediction
-
Mar./Apr
-
J.C. Jeong, X. Lin, and X.W. Chen, "On Position-Specific Scoring Matrix for Protein Function Prediction," IEEE/ACM Trans. Computational Biology and Bioinformatics, vol. 8, no. 2, pp. 308- 315, Mar./Apr. 2011.
-
(2011)
IEEE/ ACM Trans. Computational Biology and Bioinformatics
, vol.8
, Issue.2
, pp. 308-315
-
-
Jeong, J.C.1
Lin, X.2
Chen, X.W.3
-
17
-
-
79952831194
-
True path rule hierarchical ensembles for genome-wide gene function prediction
-
May/June
-
G. Valentini, "True Path Rule Hierarchical Ensembles for Genome-Wide Gene Function Prediction," IEEE/ACM Trans. Computational Biology and Bioinformatics, vol. 8, no. 3, pp. 832- 847, May/June 2011.
-
(2011)
IEEE/ ACM Trans. Computational Biology and Bioinformatics
, vol.8
, Issue.3
, pp. 832-847
-
-
Valentini, G.1
-
18
-
-
33947252154
-
Network-based prediction of protein function
-
article 88
-
R. Sharan, I. Ulitsky, and R. Shamir, "Network-Based Prediction of Protein Function," Molecular Systems Biology, vol. 3, article 88, 2007.
-
(2007)
Molecular Systems Biology
, vol.3
-
-
Sharan, R.1
Ulitsky, I.2
Shamir, R.3
-
19
-
-
77957242540
-
It's the machine that matters: Predicting gene function and phenotype from protein networks
-
P.I. Wang and E.M. Marcotte, "It's the Machine that Matters: Predicting Gene Function and Phenotype from Protein Networks," J. Proteomics, vol. 73, no. 11, pp. 2277-2289, 2010.
-
(2010)
J. Proteomics
, vol.73
, Issue.11
, pp. 2277-2289
-
-
Wang, P.I.1
Marcotte, E.M.2
-
20
-
-
79951979882
-
The impact of multifunctional genes on "guilt by association
-
J. Gillis and P. Pavlidis, "The Impact of Multifunctional Genes on "Guilt by Association" Analysis," PLoS ONE, vol. 6, no. 2, p. e17258, 2011.
-
(2011)
Analysis, PLoS ONE
, vol.6
, Issue.2
-
-
Gillis, J.1
Pavlidis, P.2
-
21
-
-
0031858914
-
SGD: Saccharomyces genome database
-
DOI 10.1093/nar/26.1.73
-
J.M. Cherry, C. Adler, C. Ball, S.A. Chervitz, S.S. Dwight, E.T. Hester, Y. Jia, G. Juvik, T.R. andMark Schroeder, S. Weng, and D. Botstein, "SGD: Saccharomyces Genome Database," Nucleic Acids Research, vol. 26, no. 1, pp. 73-79, 1998. (Pubitemid 28295265)
-
(1998)
Nucleic Acids Research
, vol.26
, Issue.1
, pp. 73-79
-
-
Cherry, J.M.1
Adler, C.2
Ball, C.3
Chervitz, S.A.4
Dwight, S.S.5
Hester, E.T.6
Jia, Y.7
Juvik, G.8
Roe, T.9
Schroeder, M.10
Weng, S.11
Botstein, D.12
-
22
-
-
33750729556
-
Manifold regularization: A geometric framework for learning from labeled and unlabeled examples
-
M. Belkin, P. Niyogi, V. Sindhwani, and P. Bartlett, "Manifold Regularization: A Geometric Framework for Learning from Labeled and Unlabeled Examples," The J. Machine Learning Research, vol. 7, pp. 2399-2434, 2006. (Pubitemid 44708005)
-
(2006)
Journal of Machine Learning Research
, vol.7
, pp. 2399-2434
-
-
Belkin, M.1
Niyogi, P.2
Sindhwani, V.3
-
23
-
-
0003684449
-
-
second ed Springer Verlag
-
T. Hastie, R. Tibshirani, and J. Friedman, The Elements of Statistical Learning: Data Mining, Inference, and Prediction, second ed. Springer Verlag, 2009.
-
(2009)
The Elements of Statistical Learning: Data Mining, Inference, and Prediction
-
-
Hastie, T.1
Tibshirani, R.2
Friedman, J.3
-
25
-
-
84899006908
-
Learning with local and global consistency
-
D. Zhou, O. Bousquet, T. Lal, J. Weston, and B. Schölkopf, "Learning with Local and Global Consistency," Advances in Neural Information Processing Systems, vol. 16, pp. 321-328, 2004.
-
(2004)
Advances in Neural Information Processing Systems
, vol.16
, pp. 321-328
-
-
Zhou, D.1
Bousquet, O.2
Lal, T.3
Weston, J.4
Schölkopf, B.5
-
26
-
-
33645323768
-
Hierarchical multi-label prediction of gene function
-
Z. Barutcuoglu, R. Schapire, and O. Troyanskaya, "Hierarchical Multi-Label Prediction of Gene Function," Bioinformatics, vol. 22, no. 7, pp. 830-836, 2006.
-
(2006)
Bioinformatics
, vol.22
, Issue.7
, pp. 830-836
-
-
Barutcuoglu, Z.1
Schapire, R.2
Troyanskaya, O.3
-
27
-
-
33747856187
-
Protein classification using probabilistic chain graphs and the Gene Ontology structure
-
DOI 10.1093/bioinformatics/btl187
-
S. Carroll and V. Pavlovic, "Protein Classification Using Probabilistic Chain Graphs and the Gene Ontology Structure," Bioinformatics, vol. 22, no. 15, pp. 1871-1878, 2006. (Pubitemid 44283032)
-
(2006)
Bioinformatics
, vol.22
, Issue.15
, pp. 1871-1878
-
-
Carroll, S.1
Pavlovic, V.2
-
28
-
-
47549088657
-
Consistent probabilistic outputs for protein function prediction
-
G. Obozinski, G. Lanckriet, C. Grant, M.I. Jordan, and W.S. Noble, "Consistent Probabilistic Outputs for Protein Function Prediction," Genome Biology, vol. 9, no. Suppl 1, p. S6, 2008.
-
(2008)
Genome Biology
, vol.9
, Issue.SUPPL. 1
-
-
Obozinski, G.1
Lanckriet, G.2
Grant, C.3
Jordan, M.I.4
Noble, W.S.5
-
30
-
-
77951518446
-
Hierarchical classification of gene ontology terms using the gostruct method
-
A. Sokolov and A. Ben-Hur, "Hierarchical Classification of Gene Ontology Terms Using the Gostruct Method," J. Bioinformatics and Computational Biology, vol. 8, no. 2, pp. 357-376, 2010.
-
(2010)
J. Bioinformatics and Computational Biology
, vol.8
, Issue.2
, pp. 357-376
-
-
Sokolov, A.1
Ben-Hur, A.2
-
31
-
-
0037767293
-
Predicting gene function from patterns of annotation
-
DOI 10.1101/gr.440803
-
O. King, R. Foulger, S. Dwight, J. White, and F. Roth, "Predicting Gene Function from Patterns of Annotation," Genome Research, vol. 13, no. 5, pp. 896-904, 2003. (Pubitemid 36621749)
-
(2003)
Genome Research
, vol.13
, Issue.5
, pp. 896-904
-
-
King, O.D.1
Foulger, R.E.2
Dwight, S.S.3
White, J.V.4
Roth, F.P.5
-
32
-
-
20444381674
-
Broadly predicting specific gene functions with expression similarity and taxonomy similarity
-
DOI 10.1016/j.gene.2005.03.033, PII S0378111905001794
-
H. Yu, L. Gao, K. Tu, and Z. Guo, "Broadly Predicting Specific Gene Functions with Expression Similarity and Taxonomy Similarity," Gene, vol. 352, pp. 75-81, 2005. (Pubitemid 40804973)
-
(2005)
Gene
, vol.352
, Issue.1-2
, pp. 75-81
-
-
Yu, H.1
Gao, L.2
Tu, K.3
Guo, Z.4
-
33
-
-
20444377910
-
Taxonomy learning: Factoring the structure of a taxonomy into a semantic classification decision
-
V. Pekar and S. Staab, "Taxonomy Learning: Factoring the Structure of a Taxonomy into a Semantic Classification Decision," Proc. 19th Int'l Conf. Computational Linguistics, 2002.
-
(2002)
Proc. 19th Int'l Conf. Computational Linguistics
-
-
Pekar, V.1
Staab, S.2
-
34
-
-
34547840224
-
Information theory applied to the sparse gene ontology annotation network to predict novel gene function
-
DOI 10.1093/bioinformatics/btm195
-
Y. Tao, L. Sam, J. Li, C. Friedman, and Y.A. Lussier, "Information Theory Applied to the Sparse Gene Ontology Annotation Network to Predict Novel Gene Function," Bioinformatics, vol. 23, no. 13, pp. i529-i538, 2007. (Pubitemid 47244440)
-
(2007)
Bioinformatics
, vol.23
, Issue.13
-
-
Tao, Y.1
Sam, L.2
Li, J.3
Friedman, C.4
Lussier, Y.A.5
-
35
-
-
0005180705
-
An information-theoretic definition of similarity
-
D. Lin, "An Information-Theoretic Definition of Similarity," Proc. 15th Int'l Conf. Machine Learning, pp. 296-304, 1998.
-
(1998)
Proc. 15th Int'l Conf. Machine Learning
, pp. 296-304
-
-
Lin, D.1
-
36
-
-
67650898284
-
Incorporating functional inter-relationships into protein function prediction algorithms
-
article 142
-
G. Pandey, C.L. Myers, and V. Kumar, "Incorporating Functional Inter-Relationships into Protein Function Prediction Algorithms," BMC Bioinformatics, vol. 10, no. 1, article 142, 2009.
-
(2009)
BMC Bioinformatics
, vol.10
, Issue.1
-
-
Pandey, G.1
Myers, C.L.2
Kumar, V.3
-
37
-
-
75149153011
-
Predicting protein functions by relaxation labelling protein interaction network
-
article S64
-
P. Hu, H. Jiang, and A. Emili, "Predicting Protein Functions by Relaxation Labelling Protein Interaction Network," BMC Bioinformatics, vol. 11, no. Suppl 1, article S64, 2010.
-
(2010)
BMC Bioinformatics
, vol.11
, Issue.SUPPL. 1
-
-
Hu, P.1
Jiang, H.2
Emili, A.3
-
38
-
-
34447294237
-
A new method to measure the semantic similarity of GO terms
-
DOI 10.1093/bioinformatics/btm087
-
J.Z. Wang, Z. Du1, R. Payattakool, P.S. Yu, and C.F. Chen, "A New Method to Measure the Semantic Similarity of GO Terms," Bioinformatics, vol. 23, no. 10, pp. 1274-1281, 2007. (Pubitemid 47050544)
-
(2007)
Bioinformatics
, vol.23
, Issue.10
, pp. 1274-1281
-
-
Wang, J.Z.1
Du, Z.2
Payattakool, R.3
Yu, P.S.4
Chen, C.-F.5
-
39
-
-
25144442693
-
Functional annotation from predicted protein interaction networks
-
DOI 10.1093/bioinformatics/bti514
-
J. McDermott, R. Bumgarner, and R. Samudrala, "Functional Annotation from Predicted Protein Interaction Networks," Bioinformatics, vol. 21, no. 15, pp. 3217-3226, 2005. (Pubitemid 41418434)
-
(2005)
Bioinformatics
, vol.21
, Issue.15
, pp. 3217-3226
-
-
McDermott, J.1
Bumgarner, R.2
Samudrala, R.3
-
40
-
-
84859194593
-
-
"Amigo Visualization," http://amigo.geneontology.org/cgibin/ amigo/amigo?mode=visualize&session-id=, 2012.
-
(2012)
Amigo Visualization
-
-
-
41
-
-
76849091130
-
Predicting novel human gene ontology annotations using semantic analysis
-
Jan-Mar
-
B. Done, P. Khatri, A. Done, and S. Draghici, "Predicting Novel Human Gene Ontology Annotations Using Semantic Analysis," IEEE/ACM Trans. Computational Biology and Bioinformatics, vol. 13, no. 7, pp. 91-99, Jan.-Mar. 2010.
-
(2010)
IEEE/ ACM Trans. Computational Biology and Bioinformatics
, vol.13
, Issue.7
, pp. 91-99
-
-
Done, B.1
Khatri, P.2
Done, A.3
Draghici, S.4
-
42
-
-
27544435126
-
Fast protein classification with multiple networks
-
DOI 10.1093/bioinformatics/bti1110
-
K. Tsuda, H. Shin, and B. Schö lkopf, "Fast Protein Classification with Multiple Networks," Bioinformatics, vol. 21, no. suppl 2, pp. ii59-ii65, 2005. (Pubitemid 41535429)
-
(2005)
Bioinformatics
, vol.21
, Issue.SUPPL. 2
-
-
Tsuda, K.1
Shin, H.J.2
Scholkopf, B.3
-
43
-
-
56349128167
-
Protein functional class prediction with a combined graph
-
H. Shin, K. Tsuda, and B. Schölkopf, "Protein Functional Class Prediction with a Combined Graph," Expert Systems with Applications, vol. 36, no. 2, pp. 3284-3292, 2009.
-
(2009)
Expert Systems with Applications
, vol.36
, Issue.2
, pp. 3284-3292
-
-
Shin, H.1
Tsuda, K.2
Schölkopf, B.3
-
44
-
-
47549116997
-
A critical assessment of mus musculus gene function prediction using integrated genomic evidence
-
L. Penã-Castillo, M. Tasan, C.L. Myers, H. Lee, T. Joshi, C. Zhang, Y. Guan, M. Leone, A. Pagnani, W.K. Kim, C. Krumpelman, W. Tian, G. Obozinski, Y. Qi, S. Mostafavi, G.N. Lin, G.F. Berriz, F.D. Gibbons, G. Lanckriet, J. Qiu, C. Grant, Z. Barutcuoglu, D.P. Hill, D. Warde-Farley, C. Grouios, D. Ray, J.A. Blake, M. Deng, M.I. Jordan, W.S. Noble, Q. Morris, J. Klein-Seetharaman, Z. Bar-Joseph, T. Chen, F. Sun, O.G. Troyanskaya, E.M. Marcotte, D. Xu, T.R. Hughes, and F.P. Roth, "A Critical Assessment of mus Musculus Gene Function Prediction Using Integrated Genomic Evidence," Genome Biology, vol. 9, no. Suppl 1, p. S2, 2008.
-
(2008)
Genome Biology
, vol.9
, Issue.SUPPL. 1
-
-
Penã-Castillo, L.1
Tasan, M.2
Myers, C.L.3
Lee, H.4
Joshi, T.5
Zhang, C.6
Guan, Y.7
Leone, M.8
Pagnani, A.9
Kim, W.K.10
Krumpelman, C.11
Tian, W.12
Obozinski, G.13
Qi, Y.14
Mostafavi, S.15
Lin, G.N.16
Berriz, G.F.17
Gibbons, F.D.18
Lanckriet, G.19
Qiu, J.20
Grant, C.21
Barutcuoglu, Z.22
Hill, D.P.23
Warde-Farley, D.24
Grouios, C.25
Ray, D.26
Blake, J.A.27
Deng, M.28
Jordan, M.I.29
Noble, W.S.30
Morris, Q.31
Klein-Seetharaman, J.32
Bar-Joseph, Z.33
Chen, T.34
Sun, F.35
Troyanskaya, O.G.36
Marcotte, E.M.37
Xu, D.38
Hughes, T.R.39
Roth, F.P.40
more..
-
45
-
-
77954309042
-
Fast integration of heterogeneous data sources for predicting gene function with limited annotation
-
S. Mostafavi and Q. Morris, "Fast Integration of Heterogeneous Data Sources for Predicting Gene Function with Limited Annotation," Bioinformatics, vol. 26, no. 14, pp. 1759- 1765, 2010.
-
(2010)
Bioinformatics
, vol.26
, Issue.14
, pp. 1759-1765
-
-
Mostafavi, S.1
Morris, Q.2
-
46
-
-
34147121646
-
Toward a comprehensive atlas of the physical interactome of Saccharomyces cerevisiae
-
DOI 10.1074/mcp.M600381-MCP200
-
S.R. Collins, P. Kemmeren, X.C. Zhao, J.F. Greenblatth, F. Spencerg, F.C.P. Holstegee, J.S. Weissman, and N.J. Krogan, "Toward a Comprehensive Atlas of the Physical Interactome of Saccharomyces Cerevisiae," Molecular and Cellular Proteomics, vol. 6, no. 3, pp. 439-450, 2007. (Pubitemid 46554539)
-
(2007)
Molecular and Cellular Proteomics
, vol.6
, Issue.3
, pp. 439-450
-
-
Collins, S.R.1
Kemmeren, P.2
Zhao, X.-C.3
Greenblatt, J.F.4
Spencer, F.5
Hoolstege, F.C.P.6
Weissman, J.S.7
Krogan, N.J.8
-
47
-
-
33644873184
-
Biogrid: A general repository for interaction data sets
-
C. Stark, B.J. Breitkreutz, T. Reguly, L. Boucher, A. Breitkreutz, and M. Tyers, "BioGRID: A General Repository for Interaction Data Sets," Nucleic Acids Research, vol. 34, no. suppl 1, pp. D535- D539, 2006.
-
(2006)
Nucleic Acids Research
, vol.34
, Issue.SUPPL. 1
-
-
Stark, C.1
Breitkreutz, B.J.2
Reguly, T.3
Boucher, L.4
Breitkreutz, A.5
Tyers, M.6
-
48
-
-
0034069495
-
Gene ontology: Tool for the unification of biology
-
DOI 10.1038/75556
-
M. Ashburner, C.A. Ball, J.A. Blake, D. Botstein, H. Butler, J.M. Cherry, A.P. Davis, K. Dolinski, S.S. Dwight, J.T. Eppig, M.A. Harris, D.P. Hill, L. Issel-Tarver, A. Kasarskis, S. Lewis, J.C. Matese, J.E. Richardson, M. Ringwald, G.M. Rubin, and G. Sherlock, "Gene Ontology: Tool for the Unification of Biology," Nature Genetics, vol. 25, no. 1, pp. 25-29, 2000. (Pubitemid 30257031)
-
(2000)
Nature Genetics
, vol.25
, Issue.1
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
Harris, M.A.11
Hill, D.P.12
Issel-Tarver, L.13
Kasarskis, A.14
Lewis, S.15
Matese, J.C.16
Richardson, J.E.17
Ringwald, M.18
Rubin, G.M.19
Sherlock, G.20
more..
-
49
-
-
45549107329
-
Use and misuse of the gene ontology annotations
-
DOI 10.1038/nrg2363, PII NRG2363
-
S.Y. Rhee, V. Wood, K. Dolinski, and S. Draghici, "Use and Misuse of the Gene Ontology Annotations," Nature Rev. Genetics, vol. 9, no. 7, pp. 509-515, 2008. (Pubitemid 351861540)
-
(2008)
Nature Reviews Genetics
, vol.9
, Issue.7
, pp. 509-515
-
-
Yon Rhee, S.1
Wood, V.2
Dolinski, K.3
Draghici, S.4
-
50
-
-
33748513704
-
Finding function: Evaluation methods for functional genomic data
-
article 187
-
C.L. Myers email, D.R. Barrett, M.A. Hibbs, C. Huttenhower, and O.G. Troyanskaya, "Finding Function: Evaluation Methods for Functional Genomic Data," BMC Genomics, vol. 7, no. 1, article 187, 2006.
-
(2006)
BMC Genomics
, vol.7
, Issue.1
-
-
Myers, C.L.1
Barrett, D.R.2
Hibbs, M.A.3
Huttenhower, C.4
Troyanskaya, O.G.5
-
51
-
-
77349119213
-
Predicting gene function using hierarchical multi- label decision tree ensembles
-
article 2
-
L. Schietgat, C. Vens, J. Struyf, H. Blockeel, D. Kocev, and S. Dzeroski, "Predicting Gene Function Using Hierarchical Multi- Label Decision Tree Ensembles," BMC Bioinformatics, vol. 11, no. 1, article 2, 2010.
-
(2010)
BMC Bioinformatics
, vol.11
, Issue.1
-
-
Schietgat, L.1
Vens, C.2
Struyf, J.3
Blockeel, H.4
Kocev, D.5
Dzeroski, S.6
-
52
-
-
48149084438
-
Increasing the reliability of protein interactomes
-
H. Chua and L. Wong, "Increasing the Reliability of Protein Interactomes," Drug Discovery Today, vol. 13, nos. 15/16, pp. 652- 658, 2008.
-
(2008)
Drug Discovery Today
, vol.13
, Issue.15-16
, pp. 652-658
-
-
Chua, H.1
Wong, L.2
-
53
-
-
84859194591
-
-
"G-sesame," http://bioinformatics.clemson.edu/G-SESAME/ index.php, 2012.
-
(2012)
G-sesame
-
-
-
54
-
-
4043137356
-
A tutorial on support vector regression
-
DOI 10.1023/B:STCO.0000035301.49549.88
-
A.J. Smola and B. Schölkopf, "A Tutorial on Support Vector Regression," Statistics and Computing, vol. 14, no. 3, pp. 199-222, 2004. (Pubitemid 39063488)
-
(2004)
Statistics and Computing
, vol.14
, Issue.3
, pp. 199-222
-
-
Smola, A.J.1
Scholkopf, B.2
|