Building genetic networks using relatedness information: A novel approach for the estimation of dispersal and characterization of group structure in social animals

Molecular Ecology

Volumn 21, Issue 7, 2012, Pages 1727-1740

  Rollins, Lee Ann ^a   Browning, Lucy E ^b,c   Holleley, Clare E ^a   Savage, James L ^c   Russell, Andrew F ^d,e   Griffith, Simon C ^a  

^a MACQUARIE UNIVERSITY   (Australia)

^b UNIVERSITY OF NEW SOUTH WALES   (Australia)

^c UNIVERSITY OF CAMBRIDGE   (United Kingdom)

^d UNIVERSITY OF EXETER   (United Kingdom)

^e CNRS   (France)

Author keywords

chestnut crowned babbler; cooperative breeders; family living; genetic structure; social structure

Indexed keywords

MICROSATELLITE DNA;

ANIMAL; ARTICLE; AUSTRALIA; BIOLOGICAL MODEL; DNA SEQUENCE; FEMALE; GENETICS; MALE; METHODOLOGY; POPULATION DYNAMICS; POPULATION GENETICS; SOCIAL BEHAVIOR; SONGBIRD;

ANIMALS; FEMALE; GENETICS, POPULATION; MALE; MICROSATELLITE REPEATS; MODELS, GENETIC; NEW SOUTH WALES; PASSERIFORMES; POPULATION DYNAMICS; SEQUENCE ANALYSIS, DNA; SOCIAL BEHAVIOR;

ANIMALIA; POMATOSTOMUS RUFICEPS;

EID: 84859101978     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2012.05492.x     Document Type: Article

References (69)

1. Archie EA, Moss CJ, Alberts SC, (2006) The ties that bind: genetic relatedness predicts the fission and fusion of social groups in wild African elephants. Proceedings of the Royal Society B: Biological Sciences, 273, 513-522. (Pubitemid 46768054)
2. Arnold KE, Owens IPF, (1998) Cooperative breeding in birds: a comparative test of the life history hypothesis. Proceedings of the Royal Society of London. Series B: Biological Sciences, 265, 739-745. (Pubitemid 28221312)
3. Baglione V, Canestrari D, Marcos JM, Ekman J, (2006) Experimentally increased food resources in the natal territory promote offspring philopatry and helping in cooperatively breeding carrion crows. Proceedings of the Royal Society B: Biological Sciences, 273, 1529-1535. (Pubitemid 47308742)
4. Barton NH, Slatkin M, (1986) A quasi-equilibrium theory of the distribution of rare alleles in a subdivided population. Heredity, 56, 409-415.
5. Berry O, Tocher MD, Sarre SD, (2004) Can assignment tests measure dispersal? Molecular Ecology, 13, 551-561. (Pubitemid 38260939)
6. Blackmore CJ, Peakall R, Heinsohn R, (2011) The absence of sex-biased dispersal in the cooperatively breeding grey-crowned babbler. Journal of Animal Ecology, 80, 69-78.
7. Blouin MS, Parsons M, Lacaille V, Lotz S, (1996) Use of microsatellite loci to classify individuals by relatedness. Molecular Ecology, 5, 393-401. (Pubitemid 126594614)
8. Borgatti SP, (2002) Netdraw Network Visualization. Analytic Technologies, Harvard, Massachusetts.
9. Chakraborty R, Jin L, (1993) Determination of relatedness between individuals using DNA fingerprinting. Human Biology, 65, 875-895.
10. Christian JJ, (1970) Social subordination, population density, and mammalian evolution. Science (New York, N.Y.), 168, 84-90.
11. Clarke AL, Sæther B-E, Røskaft E, (1997) Sex biases in avian dispersal: a reappraisal. Oikos, 79, 429-438.
12. Clobert J, Danchin E, Dhondt A, Nichols JD, (2001) Dispersal. Oxford University Press, Oxford.
13. Clutton-Brock TH, (1989) Female transfer and inbreeding avoidance in social mammals. Nature, 337, 70-72. (Pubitemid 19323185)
14. Colbert J, (1995) Capture-recapture and evolutionary ecology: a difficult wedding? Journal of Applied Statistics, 22, 989.
15. Cornwallis CK, West SA, Griffin AS, (2009) Routes to indirect fitness in cooperatively breeding vertebrates: kin discrimination and limited dispersal. Journal of Evolutionary Biology, 22, 2445-2457.
16. Dickinson JL, McGowan A, (2005) Winter resource wealth drives delayed dispersal and family-group living in western bluebirds. Proceedings of the Royal Society B: Biological Sciences, 272, 2423-2428. (Pubitemid 41579370)
17. Double MC, Cockburn A, Barry SC, Smouse PE, (1997) Exclusion probabilities for single-locus paternity analysis when related males compete for matings. Molecular Ecology, 6, 1155-1166.
18. Double MC, Peakall R, Beck NR, Cockburn A, (2005) Dispersal, philopatry, and infidelity: dissecting local genetic structure in superb fairy-wrens (Malurs cyaneus). Evolution, 59, 625-635. (Pubitemid 40441328)
19. Ekman J, Dickinson JL, Hatchwell BJ, Griesser M, (2004) Delayed dispersal. In: Ecology and Evolution of Cooperative Breeding in Birds (eds, Koenig WD, and, Dickinson JL,). Cambridge University Press, Cambridge.
20. Emlen ST, (1982) The evolution of helping. I. An ecological constraints model. The American Naturalist, 119, 29-39.
21. Emlen ST, (1995) An evolutionary theory of the family. Proceedings of the National Academy of Sciences, 92, 8092-8099.
22. Excoffier L, Laval G, Schneider S, (2005) Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online, 1, 47-50.
23. Greenwood PJ, (1980) Mating systems, philopatry and dispersal in birds and mammals. Animal Behaviour, 28, 1140-1162.
24. Griffiths R, Double MC, Orr K, Dawson RJG, (1998) A DNA test to sex most birds. Molecular Ecology, 7, 1071-1075. (Pubitemid 28371645)
25. Hamilton WD, (1964) The genetical evolution of social behaviour. Journal of Theoretical Biology, 7, 1-52.
26. Hamilton WD, (1967) Extraordinary sex ratios. Science, 156, 477-488.
27. Harris TR, Caillaud D, Chapman CA, Vigilant L, (2009) Neither genetic nor observational data alone are sufficient for understanding sex-biased dispersal in a social-group-living species. Molecular Ecology, 18, 1777-1790.
28. Hatchwell BJ, (2009) The evolution of cooperative breeding in birds: kinship, dispersal and life history. Philosophical Transactions of the Royal Society B: Biological Sciences, 364, 3217-3227.
29. Holleley C, Geerts PG, (2009) Multiplex Manager 1.0: a cross-platform computer program that plans and optimizes multiplex PCR. BioTechniques, 46, 511-517.
30. Holleley CE, Russell AF, Griffith SC, (2009) Isolation and characterization of polymorphic tetranucleotide microsatellite loci in the chestnut-crowned babbler (Pomatostomus ruficeps). Molecular Ecology Resources, 9, 993-995.
31. Koenig WD, Pitelka FA, Carmen WJ, Mumme RL, Stanback MT, (1992) The evolution of delayed dispersal in cooperative breeders. Quarterly Review of Biology, 67, 111-150. (Pubitemid 23401162)
32. Koenig WD, Van Vuren D, Hooge PN, (1996) Detectability, philopatry, and the distribution of dispersal distances in vertebrates. Trends in Ecology & Evolution, 11, 514-517. (Pubitemid 126403121)
33. Koenig WD, Hooge PN, Stanback MT, Haydock J, (2000) Natal dispersal in the cooperatively breeding acorn woodpecker. The Condor, 102, 492-502. (Pubitemid 30647476)
34. Krause J, Lusseau D, James R, (2009) Animal social networks: an introduction. Behavioral Ecology and Sociobiology, 63, 967-973.
35. Krützen M, Sherwin WB, Connor RC, et al. (2003) Contrasting relatedness patterns in bottlenose dolphins (Tursiops sp.) with different alliance strategies. Proceedings of the Royal Society of London. Series B: Biological Sciences, 270, 497-502. (Pubitemid 36308226)
36. Li CC, Weeks D, Chakravarti A, (1993) Similarity of DNA fingerprints due to chance and relatedness. Human Heredity, 43, 45-52. (Pubitemid 23097294)
37. Lynch M, Ritland K, (1999) Estimation of pairwise relatedness with molecular markers. Genetics, 152, 1753-1766. (Pubitemid 29370352)
38. Milligan BG, (2003) Maximum-likelihood estimation of relatedness. Genetics, 163, 1153-1167. (Pubitemid 36417955)
39. Nutt KJ, (2008) A comparison of techniques for assessing dispersal behaviour in gundis: revealing dispersal patterns in the absence of observed dispersal behaviour. Molecular Ecology, 17, 3541-3556. (Pubitemid 352019706)
40. Paetkau D, Slade R, Burden M, Estoup A, (2004) Genetic assignment methods for the direct, real-time estimation of migration rate: a simulation-based exploration of accuracy and power. Molecular Ecology, 13, 55-65. (Pubitemid 38106473)
41. Peakall R, Smouse PE, (2006) genalex 6: genetic analysis in Excel. Population genetic software for teaching and research. Molecular Ecology Notes, 6, 288-295. (Pubitemid 43373825)
42. Peakall R, Ruibal M, Lindenmayer DB, (2003) Spatial autocorrelation analysis offers new insights into gene flow in the Australian bush rat, Rattus fuscipes. Evolution, 57, 1182-1195. (Pubitemid 36726572)
43. Piry S, Alapetite A, Cornuet JM, et al. (2004) GeneClass2: a software for genetic assignment and first-generation migrant detection. Journal of Heredity, 95, 536-539. (Pubitemid 39383165)
44. Portelli DJ, Barclay H, Russell DJF, Griffith SC, Russell AF, (2009) Social organisation and foraging ecology of the cooperatively breeding chestnut-crowned babbler (Pomatostomus ruficeps). Emu, 109, 153-162.
45. Pritchard JK, Stephens M, Donnelly P, (2000) Inference of population structure using multilocus genotype data. Genetics, 155, 945-959. (Pubitemid 30397141)
46. Queller D, Goodnight K, (1989) Estimating relatedness using molecular markers. Evolution, 43, 258-275.
47. Ribeiro ÂM, Lloyd P, Feldheim KA, Bowie RCK, (2012) Microgeographic socio-genetic structure of an African cooperative breeding passerine revealed: integrating behavioural and genetic data. Molecular Ecology, 21, 662-672.
48. Ritland K, (1996) Estimators for pairwise relatedness and inbreeding coefficients. Genetical Research, 67, 175-186.
49. Rubenstein DR, (2011) Spatiotemporal environmental variation, risk aversion, and the evolution of cooperative breeding as a bet-hedging strategy. Proceedings of the National Academy of Sciences, 108, 10816-10822.
50. Santure AW, Stapley J, Ball AD, et al. (2010) On the use of large marker panels to estimate inbreeding and relatedness: empirical and simulation studies of a pedigreed zebra finch population typed at 771 SNPs. Molecular Ecology, 19, 1439-1451.
51. Sharp SP, Simeoni M, Hatchwell BJ, (2008) Dispersal of sibling coalitions promotes helping among immigrants in a cooperatively breeding bird. Proceedings of the Royal Society B: Biological Sciences, 275, 2125-2130.
52. Shorey L, Piertney S, Stone J, Hoglund J, (2000) Fine-scale genetic structuring on Manacus manacus leks. Nature, 408, 352-353.
53. Silk JB, (2005) Practicing Hamilton's rule: kin selection in primate groups. In: Cooperation in Primates and Humans: Mechanisms and Evolution (eds, Kappeler P, and, van Schaik C,), pp. 25-46. Springer, New York.
54. Slatkin M, (1987) Gene flow and the geographic structure of natural populations. Science, 236, 787-792. (Pubitemid 17071150)
55. Smouse PE, Peakall R, (1999) Spatial autocorrelation analysis of individual multiallele and multilocus genetic structure. Heredity, 82, 561-573. (Pubitemid 29285226)
56. Solomon NG, French JA, (1997) Cooperative Breeding in Mammals. Cambridge University Press, Cambridge.
57. Spong G, Creel S, (2001) Deriving dispersal distances from genetic data. Proceedings of the Royal Society of London. Series B: Biological Sciences, 268, 2571-2574. (Pubitemid 34107135)
58. Stacey PB, Koenig WD, (1990) Cooperative Breeding in Birds: Long-Term Studies of Ecology and Behavior. Cambridge University Press, Cambridge.
59. Sugg DW, Chesser RK, Dobson SF, Hoogland JL, (1996) Population genetics meets behavioral ecology. Trends in Ecology & Evolution, 11, 338-342.
60. Temple HJ, Hoffman JI, Amos W, (2006) Dispersal, philopatry and intergroup relatedness: fine-scale genetic structure in the white-breasted thrasher, Ramphocinclus brachyurus. Molecular Ecology, 15, 3449-3458. (Pubitemid 44379744)
61. Thomson DL, Monaghan PAT, Furness RW, (1998) The demands of incubation and avian clutch size. Biological Reviews, 73, 293-304. (Pubitemid 28474675)
62. Votier SC, Hatchwell BJ, Beckerman A, et al. (2005) Oil pollution and climate have wide-scale impacts on seabird demographics. Ecology Letters, 8, 1157-1164. (Pubitemid 41532399)
63. Wang J, (2002) An estimator for pairwise relatedness using molecular markers. Genetics, 160, 1203-1215. (Pubitemid 34263480)
64. Wang J, (2006) Informativeness of genetic markers for pairwise relationship and relatedness inference. Theoretical Population Biology, 70, 300-321. (Pubitemid 44485764)
65. Wang J, (2007) Triadic IBD coefficients and applications to estimating pairwise relatedness. Genetical Research, 89, 135-153. (Pubitemid 47491398)
66. Wang J, (2011) coancestry: a program for simulating, estimating and analysing relatedness and inbreeding coefficients. Molecular Ecology Resources, 11, 141-145.
67. Webster MS, Marra PP, Haig SM, Bensch S, Holmes RT, (2002) Links between worlds: unraveling migratory connectivity. Trends in Ecology Evolution, 17, 76-83. (Pubitemid 34142588)
68. Wilson GA, Rannala B, (2003) Bayesian inference of recent migration rates using multilocus genotypes. Genetics, 163, 1177-1191. (Pubitemid 36417957)
69. Wright S, (1951) The genetical structure of natural populations. Annals of Eugenics, 15, 323-354.