Identifying residual structure in intrinsically disordered systems: A 2D IR spectroscopic study of the GVGXPGVG peptide

Journal of the American Chemical Society

Volumn 134, Issue 11, 2012, Pages 5032-5035

  Lessing, Joshua ^a   Roy, Santanu ^b   Reppert, Mike ^a   Baer, Marcel ^c   Marx, Dominik ^c   Jansen, Thomas La Cour ^b   Knoester, Jasper ^b   Tokmakoff, Andrei ^a  

^a MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

^b UNIVERSITY OF GRONINGEN   (Netherlands)

^c RUHR UNIVERSITY BOCHUM   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

DISORDERED SYSTEM; FTIR; INTENSITY CHANGE; MOLECULAR DYNAMICS SIMULATIONS; PEAK SHIFT; RESIDUAL STRUCTURE; SIDE-CHAINS; SIMULATED SPECTRA; SPECTROSCOPIC MODELS; SPECTROSCOPIC STUDIES; STRUCTURE-BASED; TURN STRUCTURE;

AMIDES; AMINO ACIDS; CONFORMATIONS; FOURIER TRANSFORM INFRARED SPECTROSCOPY; HYDROGEN BONDS; MOLECULAR DYNAMICS; SPECTROSCOPIC ANALYSIS;

PEPTIDES;

ALANINE; ELASTIN; GLYCINE; PROLINE; VALINE;

ARTICLE; CONFORMATION; HYDROGEN BOND; INFRARED SPECTROSCOPY; MOLECULAR DYNAMICS; PROTEIN BINDING; PROTEIN FAMILY; PROTEIN STRUCTURE; QUANTITATIVE ANALYSIS; SIMULATION;

HYDROGEN BONDING; MOLECULAR DYNAMICS SIMULATION; OLIGOPEPTIDES; PROTEIN CONFORMATION; SPECTROPHOTOMETRY, INFRARED;

EID: 84858685988     PISSN: 00027863     EISSN: 15205126     Source Type: Journal    
DOI: 10.1021/ja2114135     Document Type: Article

References (33)

1. Dyson, H. J.; Wright, P. E. Annu. Rev. Biophys. Biophys. Chem. 1991, 20, 519
2. Blanco, F. J.; Jiménez, M. A.; Herranz, J.; Rico, M.; Santoro, J.; Nieto, J. L. J. Am. Chem. Soc. 1993, 115, 5887
3. Searle, M. S.; Williams, D. H.; Packman, L. C. Nat. Struct. Biol. 1995, 2, 999
4. Syud, F. A.; Stanger, H. E.; Gellman, S. H. J. Am. Chem. Soc. 2001, 123, 8667
5. Espinosa, J. F.; Syud, F. A.; Gellman, S. H. Protein Sci. 2002, 11, 1492
6. Hilario, J.; Kubelka, J.; Keiderling, T. A. J. Am. Chem. Soc. 2003, 125, 7562
7. Blandl, T.; Cochran, A. G.; Skelton, N. J. Protein Sci. 2003, 12, 237
8. Smith, A. W.; Tokmakoff, A. Angew. Chem., Int. Ed. 2007, 46, 7984
9. Smith, A. W.; Tokmakoff, A. J. Chem. Phys. 2007, 126, 045109
10. Smith, A. W.; Lessing, J.; Roy, S.; Ganim, Z.; Peng, C. S.; Jansen, T. L. C.; Knoester, J.; Tokmakoff, A. J. Phys. Chem. B 2010, 114, 10913
11. Urry, D. W. J. Phys. Chem. B 1997, 101, 11007
12. Wishart, D. S.; Bigam, C. G.; Holm, A.; Hodges, R. S.; Sykes, B. D. J. Biomol. NMR 1995, 5, 67
13. Schreiner, E.; Nicolini, C.; Ludolph, B.; Ravindra, R.; Otte, N.; Kohlmeyer, A.; Rousseau, R.; Winter, R.; Marx, D. Phys. Rev. Lett. 2004, 92, 148101
14. Baer, M.; Schreiner, E.; Kohlmeyer, A.; Rousseau, R.; Marx, D. J. Phys. Chem. B 2006, 110, 3576
15. Glaves, R.; Baer, M.; Schreiner, E.; Stoll, R.; Marx, D. ChemPhysChem 2008, 9, 2759
16. Rousseau, R.; Schreiner, E.; Kohlmeyer, A.; Marx, D. Biophys. J. 2004, 86, 1393
17. Ahmed, Z.; Scaffidi, J. P.; Asher, S. A. Biopolymers 2008, 91, 52
18. Graf, J.; Nguyen, P. H.; Stock, G.; Schwalbe, H. J. Am. Chem. Soc. 2007, 129, 1179
19. Kim, Y. S.; Hochstrasser, R. M. J. Phys. Chem. B 2009, 113, 8231
20. Shim, S.-H.; Gupta, R.; Ling, Y. L.; Strasfeld, D. B.; Raleigh, D. P.; Zanni, M. T. Proc. Natl. Acad. Sci. U.S.A. 2009, 106, 6614
21. Kolano, C.; Helbing, J.; Kozinski, M.; Sander, W.; Hamm, P. Nature 2006, 444, 469
22. Persikov, A. V.; Ramshaw, J. A. M.; Kirkpatrick, A.; Brodsky, B. Biochemistry 2000, 39, 14960
23. Gray, W. R.; Sandberg, L. B.; Foster, J. A. Nature 1973, 246, 461
24. Coyne, K. J.; Qin, X.-X.; Waite, J. H. Science 1997, 277, 1830
25. Jenkins, J. E.; Creager, M. S.; Butler, E. B.; Lewis, R. V.; Yarger, J. L.; Holland, G. P. Chem. Commun. 2010, 46, 6714
26. Anderson, O. D.; Greene, F. C.; Yip, R. E.; Halford, N. G.; Shewry, P. R.; Malpica-Romero, J. M. Nucleic Acids Res. 1989, 17, 461
27. Jansen, T. L. C.; Knoester, J. J. Chem. Phys. 2006, 124, 044502
28. Jansen, T. L. C.; Dijkstra, A. G.; Watson, T. M.; Hirst, J. D.; Knoester, J. J. Chem. Phys. 2006, 125, 044312
29. Roy, S.; Lessing, J.; Meisl, G.; Ganim, Z.; Tokmakoff, A.; Knoester, J.; Jansen, T. L. C. J. Chem. Phys. 2011, 135, 234507
30. Woutersen, S.; Hamm, P. J. Phys.: Condens. Matter 2002, 14, R1035
31. Richards, F. M. Annu. Rev. Biophys. Bioeng. 1977, 6, 151
32. Golovin, A.; Henrick, K. BMC Bioinf. 2008, 9, 312
33. Karle, I. L.; Urry, D. W. Biopolymers 2005, 77, 198