Microarray-based method for screening of immunogenic proteins from bacteria

Journal of Nanobiotechnology

Volumn 10, Issue , 2012, Pages

  Hoppe, Sebastian ^a   Bier, Frank F ^a,b   von Nickisch Rosenegk, Markus ^a  

^a FRAUNHOFER INSTITUTE FOR BIOMEDICAL ENGINEERING   (Germany)

^b UNIVERSITY OF POTSDAM   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

CAMPYLOBACTER JEJUNI; CROSS REACTIVITY; DIAGNOSTIC TOOLS; FALSE POSITIVE; FUSION PROTEINS; FUSION TAG; GEL ELECTROPHORESIS; LIFE-SCIENCES; LYSATES; NITROCELLULOSE MEMBRANES; NOVEL PROTEINS; POLYCLONAL; POLYCLONAL ANTIBODY; SPECIFIC BINDING; STATISTICAL RELIABILITY;

BACTERIA; ELECTROPHORESIS; GENE EXPRESSION; LIBRARIES; MICROARRAYS; NITROCELLULOSE; VACCINES;

PROTEINS;

BACTERIAL PROTEIN; HYBRID PROTEIN; PYROXYLIN;

ARTICLE; CAMPYLOBACTER JEJUNI; CONTROLLED STUDY; IMMUNOGENICITY; MICROARRAY ANALYSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PROTEIN BINDING; PROTEIN EXPRESSION; RELIABILITY; SCREENING; VALIDATION PROCESS; DNA MICROARRAY; ISOLATION AND PURIFICATION; METABOLISM; TWO DIMENSIONAL GEL ELECTROPHORESIS; WESTERN BLOTTING;

BACTERIA (MICROORGANISMS); CAMPYLOBACTER JEJUNI;

BACTERIAL PROTEINS; BLOTTING, WESTERN; CAMPYLOBACTER JEJUNI; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS;

EID: 84858595251     PISSN: None     EISSN: 14773155     Source Type: Journal    
DOI: 10.1186/1477-3155-10-12     Document Type: Article

References (32)

1. Butzler JP. Campylobacter, from obscurity to celebrity. Clin Microbiol Infect 2004, 10:868-876. 10.1111/j.1469-0691.2004.00983.x, 15373879.
2. Robert-Koch-Institut Epidemiologisches Bulletin 040/2011 Robert-Koch-Institut.
3. Nachamkin I. Chronic effects of Campylobacter infection. Microbes Infect 2002, 4:399-403. 10.1016/S1286-4579(02)01553-8, 11932190.
4. Bundesinstitut für Risikobewertung Stellungnahme Nr. 010/2010 Bundesinstitut für Risikobewertung.
5. Behringer M, Miller W, Oyarzabal OA. Typing of Campylobacter jejuni and Campylobacter coli isolated from live broilers and retail broiler meat by flaA-RFLP, MLST, PFGE and REP-PCR. J Microbiol Methods 2011, 84:194-201. 10.1016/j.mimet.2010.11.016, 21130125.
6. Ribot EM, Fitzgerald C, Kubota K, Swaminathan B, Barrett TJ. Rapid pulsed-field gel electrophoresis protocol for subtyping of Campylobacter jejuni. J Clin Microbiol 2001, 39:1889-1894. 10.1128/JCM.39.5.1889-1894.2001, 88044, 11326009.
7. Miller RS, Speegle L, Oyarzabal OA, Lastovica AJ. Evaluation of three commercial latex agglutination tests for identification of Campylobacter spp. J Clin Microbiol 2008, 46:3546-3547. 10.1128/JCM.01027-08, 2566095, 18753358.
8. Sambrook J, Russell DW. Molecular Cloning: A Laboratory Manual 2001, Cold Spring Harbor: Cold Spring Harbor Press, 3.
9. Xu C, Wang S, Zhaoxia Z, Peng X. Immunogenic cross-reaction among outer membrane proteins of Gram-negative bacteria. Int Immunopharmacol 2005, 5:1151-1163. 10.1016/j.intimp.2005.02.008, 15914320.
10. Coxon KM, Duggan J, Cordeiro MF, Moss SE. Purification of annexin V and its use in the detection of apoptotic cells. Methods Mol Biol 2011, 731:293-308. 10.1007/978-1-61779-080-5_24, 21516416.
11. Harper S, Speicher DW. Purification of proteins fused to glutathione S-transferase. Methods Mol Biol 2011, 681:259-280. 10.1007/978-1-60761-913-0_14, 20978970.
12. Hewitt SN, Choi R, Kelley A, Crowther GJ, Napuli AJ, Van Voorhis WC. Expression of proteins in Escherichia coli as fusions with maltose-binding protein to rescue non-expressed targets in a high-throughput protein-expression and purification pipeline. Acta Crystallogr Sect F Struct Biol Cryst Commun 2011, 67:1006-1009. 10.1107/S1744309111022159, 3169393, 21904041.
13. Wang X, Gill RL, Zhu Q, Tian F. Bacterial expression, purification, and model membrane reconstitution of the transmembrane and cytoplasmic domains of the human APP binding protein LR11/SorLA for NMR studies. Protein Expr Purif 2011, 77:224-230. 10.1016/j.pep.2011.02.004, 21320603.
14. Mao H, Graziano JJ, Chase TMA, Bentley CA, Bazirgan OA, Reddy NP, Doo Song B, Smider VV. Spatially addressed combinatorial protein libraries for recombinant antibody discovery and optimization. Nat Biotechnol 2010, 28:1195-1202. 10.1038/nbt.1694, 20972421.
15. Grossman M, Born B, Heyden M, Tworowski D, Fields GB, Sagi I, Havenith M. Correlated structural kinetics and retarded solvent dynamics at the metalloprotease active site. Nat Struct Mol Biol 2011, 18:1102-1108. 10.1038/nsmb.2120, 3308126, 21926991.
16. Los GV, Encell LP, McDougall MG, Hartzell DD, Karassina N, Zimprich C, Wood MG, Learish R, Ohana RF, Urh M, Simpson D, Mendez J, Zimmerman K, Otto P, Vidugiris G, Zhu J, Darzins A, Klaubert DH, Bulleit RF, Wood KV. HaloTag: a novel protein labeling technology for cell imaging and protein analysis. ACS Chem Biol 2008, 3:373-382. 10.1021/cb800025k, 18533659.
17. Wissmueller S, Font J, Liew CW, Cram E, Schroeder T, Turner J, Crossley M, Mackay JP, Matthews JM. Protein-protein interactions: analysis of a false positive GST pulldown result. Proteins 2011, 79:2365-2371. 10.1002/prot.23068, 21638332.
18. Wyszynska A, Zycka J, Godlewska R, Jagusztyn-Krynicka EK. The Campylobacter jejuni/coli cjaA (cj0982c) gene encodes an N-glycosylated lipoprotein localized in the inner membrane. Curr Microbiol 2008, 57:181-188. 10.1007/s00284-008-9171-3, 18584243.
19. Pawelec DP, Korsak D, Wyszynska AK, Rozynek E, Popowski J, Jagusztyn-Krynicka EK. Genetic diversity of the Campylobacter genes coding immunodominant proteins. FEMS Microbiol Lett 2000, 185:43-49. 10.1111/j.1574-6968.2000.tb09038.x, 10731605.
20. Wyszynska A, Pawelec DP, Jagusztyn-Krynicka EK. Immunological characterization of the Campylobacter jejuni 72Dz/92 cjaD gene product and its fusion with B subunit of E. coli LT toxin. Acta Microbiol Pol 2002, 51:313-326.
21. Baqar S, Applebee LA, Gilliland TC, Lee LH, Porter CK, Guerry P. Immunogenicity and protective efficacy of recombinant Campylobacter jejuni flagellum-secreted proteins in mice. Infect Immun 2008, 76:3170-3175. 10.1128/IAI.00076-08, 2446702, 18426878.
22. Nuijten PJ, van der Zeijst BA, Newell DG. Localization of immunogenic regions on the flagellin proteins of Campylobacter jejuni 81116. Infect Immun 1991, 59:1100-1105. 258373, 1705240.
23. Du LF, Li ZJ, Tang XY, Huang JQ, Sun WB. Immunogenicity and immunoprotection of recombinant PEB1 in Campylobacter-jejuni-infected mice. World J Gastroenterol 2008, 14:6244-6248. 10.3748/wjg.14.6244, 2761589, 18985818.
24. Creuzenet C. Characterization of CJ1293, a new UDP-GlcNAc C6 dehydratase from Campylobacter jejuni. FEBS Lett 2004, 559:136-140. 10.1016/S0014-5793(04)00057-2, 14960321.
25. Schoenhofen IC, McNally DJ, Vinogradov E, Whitfield D, Young NM, Dick S, Wakarchuk WW, Brisson JR, Logan SM. Functional characterization of dehydratase/aminotransferase pairs from Helicobacter and Campylobacter: enzymes distinguishing the pseudaminic acid and bacillosamine biosynthetic pathways. J Biol Chem 2006, 281:723-732.
26. Ekins RP, Chu F. Multianalyte microspot immunoassay. The microanalytical "compact disc" of the future. Ann Biol Clin (Paris) 1992, 50:337-353.
27. Studier FW. Use of bacteriophage T7 lysozyme to improve an inducible T7 expression system. J Mol Biol 1991, 219:37-44. 10.1016/0022-2836(91)90855-Z, 2023259.
28. Bolla JM, Loret E, Zalewski M, Pagés JM. Conformational analysis of the Campylobacter jejuni porin. J Bacteriol 1995, 177:4266-4271. 177172, 7543469.
29. Zhou ZP, Shimizu Y, Tadakuma H, Taguchi H, Ito K, Ueda T. Single molecule imaging of the trans-translation entry process via anchoring of the tagged ribosome. J Biochem 2011, 149:609-618. 10.1093/jb/mvr010, 21278155.
30. Strauch RC, Mastarone DJ, Sukerkar PA, Song Y, Ipsaro JJ, Meade TJ. Reporter protein-targeted probes for magnetic resonance imaging. J Am Chem Soc 2011, 133:16346-16349. 10.1021/ja206134b, 21942425.
31. Kovalenko EI, Ranjbar S, Jasenosky LD, Goldfeld AE, Vorobjev IA, Barteneva NS. The use of HaloTag-based technology in flow and laser scanning cytometry analysis of live and fixed cells. BMC Res Notes 2011, 4:340. 10.1186/1756-0500-4-340, 3189897, 21906296.
32. Zhu H, Hu S, Jona G, Zhu X, Kreiswirth N, Willey BM, Mazzulli T, Liu G, Song Q, Chen P, Cameron M, Tyler A, Wang J, Wen J, Chen W, Compton S, Snyder M. Severe acute respiratory syndrome diagnostics using a coronavirus protein microarray. PNAS 2006, 103:4011-4016. 10.1073/pnas.0510921103, 1449637, 16537477.