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Volumn 12, Issue 1, 2012, Pages 93-103

Muscle-specific gene expression is underscored by differential stressor responses and coexpression changes

Author keywords

Differential expression; Gene coexpression; Microarrays; Skeletal muscle; System biology

Indexed keywords

FATTY ACID;

EID: 84858445718     PISSN: 1438793X     EISSN: 14387948     Source Type: Journal    
DOI: 10.1007/s10142-011-0249-9     Document Type: Article
Times cited : (5)

References (37)
  • 1
    • 65349085291 scopus 로고    scopus 로고
    • Global networks of functional coupling in eukaryotes from comprehensive data integration
    • 19246318 10.1101/gr.087528.108 1:CAS:528:DC%2BD1MXntFGrsb0%3D
    • A Alexeyenko EL Sonnhammer 2009 Global networks of functional coupling in eukaryotes from comprehensive data integration Genome Res 19 1107 1116 19246318 10.1101/gr.087528.108 1:CAS:528:DC%2BD1MXntFGrsb0%3D
    • (2009) Genome Res , vol.19 , pp. 1107-1116
    • Alexeyenko, A.1    Sonnhammer, E.L.2
  • 2
    • 0025183708 scopus 로고
    • Basic local alignment search tool
    • 2231712 1:CAS:528:DyaK3MXitVGmsA%3D%3D
    • SF Altschul W Gish W Miller EW Myers DJ Lipman 1990 Basic local alignment search tool J Mol Biol 215 403 410 2231712 1:CAS:528:DyaK3MXitVGmsA%3D%3D
    • (1990) J Mol Biol , vol.215 , pp. 403-410
    • Altschul, S.F.1    Gish, W.2    Miller, W.3    Myers, E.W.4    Lipman, D.J.5
  • 3
    • 9144245740 scopus 로고    scopus 로고
    • Development of a porcine skeletal muscle cDNA microarray: Analysis of differential transcript expression in phenotypically distinct muscles
    • DOI 10.1186/1471-2164-4-8
    • Q Bai C McGillivray N da Costa S Dornan G Evans MJ Stear K-C Chang 2003 Development of a porcine skeletal muscle cDNA microarray: analysis of differential transcript expression in phenotypically distinct muscles BMC Genomics 4 8 12611633 10.1186/1471-2164-4-8 (Pubitemid 39546634)
    • (2003) BMC Genomics , vol.4 , pp. 8
    • Bai, Q.1    McGillivray, C.2    De Costa, N.3    Dornan, S.4    Evans, G.5    Stear, M.J.6    Chang, K.-C.7
  • 4
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Y Benjamini Y Hochberg 1995 Controlling the false discovery rate: a practical and powerful approach to multiple testing J Roy Stat Soc A 57 289 300
    • (1995) J Roy Stat Soc A , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 8
    • 77953308695 scopus 로고    scopus 로고
    • Muscle transcriptomic profiles in pigs with divergent phenotypes for fatness traits
    • 20540717
    • A Cánovas R Quintanilla M Amills RN Pena 2010 Muscle transcriptomic profiles in pigs with divergent phenotypes for fatness traits BMC Genomics 11 372 20540717
    • (2010) BMC Genomics , vol.11 , pp. 372
    • Cánovas, A.1    Quintanilla, R.2    Amills, M.3    Pena, R.N.4
  • 9
    • 77955095124 scopus 로고    scopus 로고
    • HSP90beta interacts with Rac1 to activate NADPH oxidase in Helicobacter pylori-infected gastric epithelial cells
    • 20451655 10.1016/j.biocel.2010.04.015 1:CAS:528:DC%2BC3cXptlaksbc%3D
    • B Cha JW Lim KH Kim H Kim 2010 HSP90beta interacts with Rac1 to activate NADPH oxidase in Helicobacter pylori-infected gastric epithelial cells Int J Biochem Cell Biol 42 1455 1461 20451655 10.1016/j.biocel.2010.04.015 1:CAS:528:DC%2BC3cXptlaksbc%3D
    • (2010) Int J Biochem Cell Biol , vol.42 , pp. 1455-1461
    • Cha, B.1    Lim, J.W.2    Kim, K.H.3    Kim, H.4
  • 10
    • 34249081419 scopus 로고    scopus 로고
    • Key signalling factors and pathways in the molecular determination of skeletal muscle phenotype
    • DOI 10.1017/S1751731107702070, PII S1751731107702070
    • KC Chang 2007 Key signalling factors and pathways in the molecular determination of skeletal muscle phenotype Animal 1 681 698 10.1017/ S1751731107702070 10.1017/S1751731107702070 1:CAS:528:DC%2BD2sXot1Kkurk%3D (Pubitemid 46789383)
    • (2007) Animal , vol.1 , Issue.5 , pp. 681-698
    • Chang, K.C.1
  • 11
    • 34248391847 scopus 로고    scopus 로고
    • Enhanced muscle mixed and mitochondrial protein synthesis rates after a high-fat or high-sucrose diet
    • E Chanseaume C Giraudet C Gryson S Walrand P Rousset Y Boirie B Morio 2007 Enhanced muscle mixed and mitochondrial protein synthesis rates after a high-fat or high-sucrose diet[ast] Obesity 15 853 859 17426320 10.1038/oby.2007.582 1:CAS:528:DC%2BD2sXlt12ksL4%3D (Pubitemid 46740960)
    • (2007) Obesity , vol.15 , Issue.4 , pp. 853-859
    • Chanseaume, E.1    Giraudet, C.2    Gryson, C.3    Walrand, S.4    Rousset, P.5    Boirie, Y.6    Morio, B.7
  • 13
    • 60849139395 scopus 로고    scopus 로고
    • GOrilla: A tool for discovery and visualization of enriched GO terms in ranked gene lists
    • 10.1186/1471-2105-10-48
    • E Eden R Navon I Steinfeld D Lipson Z Yakhini 2009 GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists BMC Bioinforma 10 48 10.1186/1471-2105-10-48
    • (2009) BMC Bioinforma , vol.10 , pp. 48
    • Eden, E.1    Navon, R.2    Steinfeld, I.3    Lipson, D.4    Yakhini, Z.5
  • 14
    • 34548036759 scopus 로고    scopus 로고
    • Heat stress inhibits skeletal muscle hypertrophy
    • DOI 10.1379/CSC-233R.1
    • BC Frier M Locke 2007 Heat stress inhibits skeletal muscle hypertrophy Cell Stress Chaperones 12 132 141 17688192 10.1379/CSC-233R.1 1:CAS:528:DC%2BD2sXoslGntbo%3D (Pubitemid 350224162)
    • (2007) Cell Stress and Chaperones , vol.12 , Issue.2 , pp. 132-141
    • Frier, B.C.1    Locke, M.2
  • 15
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • 10.1038/nprot.2008.211 1:CAS:528:DC%2BD1cXhsFCkurnI
    • DW Huang BT Sherman RA Lempicki 2009 Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources Nat Protoc 4 44 57 10.1038/nprot.2008.211 1:CAS:528:DC%2BD1cXhsFCkurnI
    • (2009) Nat Protoc , vol.4 , pp. 44-57
    • Huang, D.W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 16
    • 70349668879 scopus 로고    scopus 로고
    • Inferring the transcriptional landscape of bovine skeletal muscle by integrating co-expression networks
    • 19794913 10.1371/journal.pone.0007249
    • NJ Hudson A Reverter Y Wang PL Greenwood BP Dalrymple 2009 Inferring the transcriptional landscape of bovine skeletal muscle by integrating co-expression networks PLoS One 4 e7249 19794913 10.1371/journal.pone.0007249
    • (2009) PLoS One , vol.4 , pp. 7249
    • Hudson, N.J.1    Reverter, A.2    Wang, Y.3    Greenwood, P.L.4    Dalrymple, B.P.5
  • 17
    • 8744309971 scopus 로고    scopus 로고
    • Differential expression profiling of the proteomes and their mRNAs in porcine white and red skeletal muscles
    • DOI 10.1002/pmic.200400976
    • N-K Kim J-H Joh H-R Park O-H Kim B-Y Park C-S Lee 2004 Differential expression profiling of the proteomes and their mRNAs in porcine white and red skeletal muscles Proteomics 4 3422 3428 10.1002/pmic.200400976 15449374 10.1002/pmic.200400976 1:CAS:528:DC%2BD2cXhtVaqsb%2FI (Pubitemid 39525291)
    • (2004) Proteomics , vol.4 , Issue.11 , pp. 3422-3428
    • Kim, N.-K.1    Joh, J.-H.2    Park, H.-R.3    Kim, O.-H.4    Park, B.-Y.5    Lee, C.-S.6
  • 18
    • 57749208682 scopus 로고    scopus 로고
    • Janus chaperones: Assistance of both RNA- and protein-folding by ribosomal proteins
    • Kovacs D, Rakacs M, Agoston B, Lenkey K, Semrad K, Schroeder R, Tompa P (2009) Janus chaperones: assistance of both RNA- and protein-folding by ribosomal proteins. FEBS Lett 583(1):88-92
    • (2009) FEBS Lett , vol.583 , Issue.1 , pp. 88-92
    • Kovacs, D.1    Rakacs, M.2    Agoston, B.3    Lenkey, K.4    Semrad, K.5    Schroeder, R.6    Tompa, P.7
  • 19
    • 9744252828 scopus 로고    scopus 로고
    • Development and application of a bovine cDNA microarray for expression profiling of muscle and adipose tissue
    • DOI 10.1071/EA03238
    • SA Lehnert YH Wang KA Byrne 2004 Development and application of a bovine cDNA microarray for expression profiling of muscle and adipose tissue Aust J Exp Agric 44 1127 1133 10.1071/EA03238 1:CAS:528:DC%2BD2cXhtVKrurfP (Pubitemid 40118347)
    • (2004) Australian Journal of Experimental Agriculture , vol.44 , Issue.11 , pp. 1127-1133
    • Lehnert, S.A.1    Wang, Y.H.2    Byrne, K.A.3
  • 23
    • 33645094969 scopus 로고    scopus 로고
    • Using mixture models to detect differentially expressed genes
    • 10.1071/EA05051 1:CAS:528:DC%2BD2MXpt1entL0%3D
    • GJ McLachlan RW Bean J Ben-Tovim JX Zhu 2005 Using mixture models to detect differentially expressed genes Aust J Exp Agric 45 859 866 10.1071/EA05051 1:CAS:528:DC%2BD2MXpt1entL0%3D
    • (2005) Aust J Exp Agric , vol.45 , pp. 859-866
    • McLachlan, G.J.1    Bean, R.W.2    Ben-Tovim, J.3    Zhu, J.X.4
  • 24
    • 14844318032 scopus 로고    scopus 로고
    • Protein synthesis rates in human muscles: Neither anatomical location nor fibre-type composition are major determinants
    • DOI 10.1113/jphysiol.2004.077180
    • B Mittendorfer JL Andersen P Plomgaard B Saltin JA Babraj K Smith MJ Rennie 2005 Protein synthesis rates in human muscles: neither anatomical location nor fibre-type composition are major determinants J Physiol 563 203 211 15611031 10.1113/jphysiol.2004.077180 1:CAS:528:DC%2BD2MXitVSntbY%3D (Pubitemid 40340376)
    • (2005) Journal of Physiology , vol.563 , Issue.1 , pp. 203-211
    • Mittendorfer, B.1    Andersen, J.L.2    Plomgaard, P.3    Saltin, B.4    Babraj, J.A.5    Smith, K.6    Rennie, M.J.7
  • 25
    • 59049104266 scopus 로고    scopus 로고
    • A comprehensive characterisation of the fibre composition and properties of a limb (Flexor digitorum superficialis, membri thoraci) and a trunk (Psoas major) muscle in cattle
    • 19077313 10.1186/1471-2121-9-67
    • N Moreno-Sánchez C Díaz MJ Carabaño J Rueda JL Rivero 2008 A comprehensive characterisation of the fibre composition and properties of a limb (Flexor digitorum superficialis, membri thoraci) and a trunk (Psoas major) muscle in cattle BMC Cell Biol 9 67 19077313 10.1186/1471-2121-9-67
    • (2008) BMC Cell Biol , vol.9 , pp. 67
    • Moreno-Sánchez, N.1    Díaz, C.2    Carabaño, M.J.3    Rueda, J.4    Rivero, J.L.5
  • 27
    • 33745830817 scopus 로고    scopus 로고
    • Time course and differential responses of the major heat shock protein families in human skeletal muscle following acute nondamaging treadmill exercise
    • DOI 10.1152/japplphysiol.00046.2006
    • JP Morton DPM MacLaren NT Cable T Bongers RD Griffiths IT Campbell L Evans A Kayani A McArdle B Drust 2006 Time course and differential responses of the major heat shock protein families in human skeletal muscle following acute nondamaging treadmill exercise J Appl Physiol 101 176 182 10.1152/japplphysiol. 00046.2006 16565353 10.1152/japplphysiol.00046.2006 1:CAS:528: DC%2BD28XnsFWjsLo%3D (Pubitemid 44035363)
    • (2006) Journal of Applied Physiology , vol.101 , Issue.1 , pp. 176-182
    • Morton, J.P.1    MacLaren, D.P.M.2    Cable, N.T.3    Bongers, T.4    Griffiths, R.D.5    Campbell, I.T.6    Evans, L.7    Kayani, A.8    McArdle, A.9    Drust, B.10
  • 28
    • 58049198442 scopus 로고    scopus 로고
    • Human gene coexpression landscape: Confident network derived from tissue transcriptomic profiles
    • 19081792 10.1371/journal.pone.0003911
    • C Prieto A Risueño C Fontanillo RJ De Las 2008 Human gene coexpression landscape: confident network derived from tissue transcriptomic profiles PLoS One 3 e3911 19081792 10.1371/journal.pone.0003911
    • (2008) PLoS One , vol.3 , pp. 3911
    • Prieto, C.1    Risueño, A.2    Fontanillo, C.3    De Las, R.J.4
  • 29
    • 33644755221 scopus 로고    scopus 로고
    • Construction of gene interaction and regulatory networks in bovine skeletal muscle from expression data
    • 10.1071/EA05039 1:CAS:528:DC%2BD2MXpt1entL8%3D
    • A Reverter W Barris N Moreno-Sánchez S McWilliam YH Wang G Harper SA Lehnert BP Dalrymple 2005 Construction of gene interaction and regulatory networks in bovine skeletal muscle from expression data Aust J Exp Agric 45 821 829 10.1071/EA05039 1:CAS:528:DC%2BD2MXpt1entL8%3D
    • (2005) Aust J Exp Agric , vol.45 , pp. 821-829
    • Reverter, A.1    Barris, W.2    Moreno-Sánchez, N.3    McWilliam, S.4    Wang, Y.H.5    Harper, G.6    Lehnert, S.A.7    Dalrymple, B.P.8
  • 31
    • 0025913239 scopus 로고
    • HSP70 and other possible heat shock or oxidative stress proteins are induced in skeletal muscle, heart, and liver during exercise
    • DC Salo CM Donovan KJA Davies 1991 HSP70 and other possible heat shock or oxidative stress proteins are induced in skeletal muscle, heart, and liver during exercise Free Radic Biol Med 11 239 246 1937141 10.1016/0891-5849(91) 90119-N 1:CAS:528:DyaK3MXmslKmu7o%3D (Pubitemid 121003919)
    • (1991) Free Radical Biology and Medicine , vol.11 , Issue.3 , pp. 239-246
    • Salo, D.C.1    Donovan, C.M.2    Davies, K.J.A.3
  • 33
    • 20144365860 scopus 로고    scopus 로고
    • Biochemical and transcriptomic analyses of two bovine skeletal muscles in Charolais bulls divergently selected for muscle growth
    • DOI 10.1016/j.meatsci.2005.01.012, PII S0309174005000549
    • K Sudre I Cassar-Malek A Listrat Y Ueda C Leroux C Jurie C Auffray G Renand P Martin J-F Hocquette 2005 Biochemical and transcriptomic analyses of two bovine skeletal muscles in Charolais bulls divergently selected for muscle growth Meat Sci 70 267 277 22063483 10.1016/j.meatsci.2005.01.012 1:CAS:528:DC%2BD2MXivVejsLo%3D (Pubitemid 40391604)
    • (2005) Meat Science , vol.70 , Issue.2 , pp. 267-277
    • Sudre, K.1    Cassar-Malek, I.2    Listrat, A.3    Ueda, Y.4    Leroux, C.5    Jurie, C.6    Auffray, C.7    Renand, G.8    Martin, P.9    Hocquette, J.-F.10
  • 34
    • 0002643788 scopus 로고
    • Activities of metabolic and contractile enzymes in 18 bovine muscles
    • 22055463 10.1016/0309-1740(86)90064-1 1:CAS:528:DyaL2sXjtFGisg%3D%3D
    • A Talmant G Monin 1986 Activities of metabolic and contractile enzymes in 18 bovine muscles Meat Sci 18 23 40 22055463 10.1016/0309-1740(86)90064-1 1:CAS:528:DyaL2sXjtFGisg%3D%3D
    • (1986) Meat Sci , vol.18 , pp. 23-40
    • Talmant, A.1    Monin, G.2
  • 36
    • 63649157049 scopus 로고    scopus 로고
    • How common are extraribosomal functions of ribosomal proteins?
    • 19362532 10.1016/j.molcel.2009.03.006 1:CAS:528:DC%2BD1MXls1Srs7k%3D
    • JR Warner KB McIntosh 2009 How common are extraribosomal functions of ribosomal proteins? Mol Cell 34 3 11 19362532 10.1016/j.molcel.2009.03.006 1:CAS:528:DC%2BD1MXls1Srs7k%3D
    • (2009) Mol Cell , vol.34 , pp. 3-11
    • Warner, J.R.1    McIntosh, K.B.2
  • 37
    • 0942301256 scopus 로고    scopus 로고
    • Transcriptional analysis of mouse skeletal myofiber diversity and adaptation to endurance exercise
    • DOI 10.1023/B:JURE.0000009968.60331.86
    • H Wu T Gallardo EN Olson RS Williams RV Shohet 2003 Transcriptional analysis of mouse skeletal myofiber diversity and adaptation to endurance exercise J Muscle Res Cell Motil 24 587 592 14870974 10.1023/B:JURE.0000009968. 60331.86 1:CAS:528:DC%2BD3sXhtVSjs7rN (Pubitemid 38141885)
    • (2003) Journal of Muscle Research and Cell Motility , vol.24 , Issue.8 , pp. 587-592
    • Wu, H.1    Gallardo, T.2    Olson, E.N.3    Williams, R.S.4    Shohet, R.V.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.