Thermodynamic activation and structural analysis of trypsin i from Monterey sardine (Sardinops sagax caerulea)

Food Chemistry

Volumn 133, Issue 3, 2012, Pages 898-904

  Arvizu Flores, Aldo A ^a   Quintero Reyes, Idania E ^a   Felix Lopez, Martha ^b   Islas Osuna, Maria A ^b   Yepiz Plascencia, Gloria ^b   Pacheco Aguilar, Ramón ^b   Navare, Arti ^c   Fernández, Facundo M ^c   Velazquez Contreras, Enrique F ^a   Sotelo Mundo, Rogerio R ^b   Castillo Yañez, Francisco J ^a  

^a UNIVERSIDAD DE SONORA   (Mexico)

^b CENTRO DE INVESTIGACIÓN EN ALIMENTACIÓN Y DESARROLLO   (Mexico)

^c GEORGIA INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

cDNA; Cold adapted; Molecular modelling; Monterey sardine; Sardinops sagax caerulea; Thermodynamic activation parameters; Trypsin

Indexed keywords

CDNA; COLD-ADAPTED; MONTEREY SARDINE; SARDINOPS SAGAX CAERULEA; THERMODYNAMIC ACTIVATION PARAMETERS; TRYPSIN;

AMINO ACIDS; CLONING; MODEL STRUCTURES; MOLECULAR MODELING; THERMODYNAMICS;

ACTIVATION ANALYSIS;

COMPLEMENTARY DNA; RNA; SERINE PROTEINASE; TRYPSIN; TRYPSINOGEN;

AMINO ACID SEQUENCE; ANIMAL TISSUE; ARTICLE; CECUM; COLD ACCLIMATIZATION; ENZYME ACTIVITY; ENZYME KINETICS; FISH; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; MEXICO; MOLECULAR MODEL; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PROTEIN PURIFICATION; PROTEIN STRUCTURE; SARDINE; STRUCTURE ANALYSIS; THERMODYNAMICS;

SARDINOPS SAGAX;

EID: 84858335013     PISSN: 03088146     EISSN: 18737072     Source Type: Journal    
DOI: 10.1016/j.foodchem.2012.01.111     Document Type: Article

References (32)

1. M.A. Amiza, and R.K.O. Apenten Urea and heat unfolding of cold-adapted Atlantic cod (Gadus morhua) trypsin and bovine trypsin Journal of the Science of Food and Agriculture 70 1 1996 1 10
2. B. Asgeirsson, J.W. Fox, and J.B. Bjarnason Purification and characterization of trypsin from the poikilotherm Gadus morhua European Journal of Biochemistry 180 1 1989 85 94
3. F.J. Castillo-Yañez, R. Pacheco-Aguilar, F.L. Garcia-Carreño, and M.L. Navarrete-del-Toro Isolation and characterization of trypsin from pyloric caeca of Monterey sardine Sardinops sagax caerulea Comparative Biochemistry and Physiology B-Biochemistry and Molecular Biology 140 1 2005 91 98
4. F.J. Castillo-Yañez, R. Pacheco-Aguilar, M.E. Lugo-Sanchez, G. Garcia-Sanchez, and I.E. Quintero-Reyes Biochemical characterization of an isoform of chymotrypsin form the viscera of Monterey sardine (Sardinops sagax caerulea), and comparison with bovine chymotrypsin Food Chemistry 112 3 2009 634 639
5. R.A. Copeland Enzymes: A practical introduction to structure, mechanism and data analysis 2000 Wiley-VCH, Inc. New York
6. B.F. Erlanger, N. Kokowsky, and W. Cohen The preparation and properties of two new chromogenic substrates of trypsin Archives of Biochemistry and Biophysics 95 1961 271 278
7. G. Feller, and C. Gerday Psychrophillic enzymes: Molecular basis of cold adaptation Cellular and Molecular Life Sciences 53 10 1997 830 841
8. T. Fuchise, H. Kishimura, H. Sekizaki, Y. Nonami, G. Kanno, and S. Klomklao Purification and characteristics of trypsins from cold-zone fish, Pacific cod (Gadus macrocephalus) and saffron cod (Eleginus gracilis) Food Chemistry 116 3 2009 611 616
9. Gasteiger, E.; Hoogland, C.; Gattiker, A.; Duvaud, S.; Wilkins, M. R.; Appel, R. D.; & Bairoch, A. (2005). Protein identification and analysis tools on the ExPASy server. The proteomics protocols handbook, 571-607.
10. A. Gattiker, W.V. Bienvenut, A. Bairoch, and E. Gasteiger FindPept, a tool to identify unmatched masses in peptide mass fingerprinting protein identification Proteomics 2 10 2002 1435 1444
11. S. Genicot, G. Feller, and C. Gerday Trypsin from antarctic fish (Paranotothenia magellanica Forster) as compared with trout (Salmo gairdneri) trypsin Comparative Biochemistry Physiology 90B 1988 601 609
12. A. Gudmundsdottir, and J. Bjarnason Applications of cold-adapted proteases in the food industry R. Rastall, Novel enzyme technology for food applications 2007 CRC Press LLC Boca Raton 205 214
13. A. Gudmundsdottir, and H.M. Palsdottir Atlantic cod trypsins: From basic research to practical applications Marine Biotechnology (NY) 7 2 2005 77 88
14. M.S. Heu, H.R. Kim, and J.H. Pyeun Comparison of trypsin and chymotrypsin from the viscera of anchovy, Engraulis japonica Comparative Biochemistry and Physiology B-Biochemistry and Molecular Biology 112 3 1995 557 567
15. P.W. Hochachka, and G.N. Somero Biochemical adaptation 1984 Princeton University Press New Jersey
16. H.R. Kim, S.P. Meyers, J.H. Pyeun, and J.S. Godber Enzymatic properties of anionic trypsins from the hepatopancreas of crayfish, Procambarus clarkii Comparative Biochemistry and Physiology B-Biochemistry and Molecular Biology 107 2 1994 197 203
17. H.K. Leiros, S.M. McSweeney, and A.O. Smalas Atomic resolution structures of trypsin provide insight into structural radiation damage Acta Crystallographica Section D: Biological Crystallography 57 Pt 4 2001 448 497
18. H.K. Leiros, N.P. Willassen, and A.O. Smalas Structural comparison of psychrophilic and mesophilic trypsins. Elucidating the molecular basis of cold-adaptation European Journal of Biochemistry 267 4 2000 1039 1049
19. T. Lonhienne, C. Gerday, and G. Feller Psychrophilic enzymes: Revisiting the thermodynamic parameters of activation may explain local flexibility Biochimica et Biophysica Acta 1543 1 2000 1 10
20. R. Male, J. Lorens, A. Smalas, and K. Torrissen Molecular cloning and characterization of anionic and cationic variants of trypsin from Atlantic salmon European Journal of Biochemistry 232 1995 677 685
21. K. Murakami, and M. Noda Studies on proteinases from the digestive organs of sardine. I. Purification and characterization of three alkaline proteinases from the pyloric caeca Biochimica et Biophysica Acta 658 1 1981 17 26
22. F.G. Noriega, J.E. Pennington, C. Barillas-Mury, X.Y. Wang, and M.A. Wells Aedes aegypti midgut early trypsin is post-transcriptionally regulated by blood feeding Insect Molecular Biology 5 1 1996 25 29
23. H.M. Palsdottir, and A. Gudmundsdottir The novel trypsin Y from Atlantic cod (Gadus morhua) - Isolation, purification and characterisation Food Chemistry 111 2 2008 408 414
24. A.M. Peterson, C.V. Barillas-Mury, and M.A. Wells Sequence of three cDNAs encoding an alkaline midgut trypsin from Manduca sexta Insect Biochemistry and Molecular Biology 24 5 1994 463 471
25. M.G. Romo-Figueroa, C. Vargas-Requena, R.R. Sotelo-Mundo, F. Vargas-Albores, I. Higuera-Ciapara, and K. Soderhall Molecular cloning of a b-glucan pattern-recognition lipoprotein from the white shrimp Penaeus (Litopenaeus) vannamei: correlations between the deduced amino acid sequence and the native protein structure Developmental and Comparative Immunology 28 7-8 2004 713 726
26. W.R. Rypniewski, A. Perrakis, C.E. Vorgias, and K.S. Wilson Evolutionary divergence and conservation of trypsin Protein Engineering Design and Selection 7 1 1994 57
27. K.S. Siddiqui, and R. Cavicchioli Cold-adapted enzymes Annual Review of Biochemistry 75 2006 403 433
28. B.K. Simpson, and N.F. Haard Trypsin from Greenland cod, Gadus ogac isolation and comparative properties Comparative Biochemistry and Physiology B-Biochemistry and Molecular Biology 79 4 1984 613 622
29. B.K. Simpson, J.P. Smith, V. Yaylayan, and N.F. Haard Kinetic and thermodynamic characteristics of a digestive protease from Atlantic cod, Gadus morhua Journal of Food Biochemistry 13 3 1989 201 213
30. B. Stefansson, L. Helgadottir, S. Olafsdottir, A. Gudmundsdottir, and J. Bjarnason Characterization of cold-adapted Atlantic-cod (Gadus morhua) trypsin I - Kinetic parameters, autolysis and thermal stability Comparative Biochemistry and Physiology B - Biochemistry and Molecular Biology 155 2 2010 186 194
31. E. Toyota, K.K. Nq, S. Kuninaga, H. Sekizaki, K. Itoh, and K. Tanizawa Crystal structure and nucleotide sequence of an anionic trypsin from chum salmon (Oncorhynchus keta) in comparison with Atlantic salmon (Salmo salar) and bovine trypsin Journal of Molecular Biology 324 3 2002 391 397
32. A. Tramontano Protein structure prediction: Concepts and applications 2006 Wiley-VCH Weinheim, Germany