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Volumn 92, Issue 5, 2012, Pages 1064-1072

Influence of fertilisation regimes on a nosZ-containing denitrifying community in a rice paddy soil

Author keywords

Abundance; Community composition; Denitrification; Fertilisation; nosZ gene

Indexed keywords

CARBON; FERTILIZER; NITROGEN; NITROUS OXIDE REDUCTASE; OXIDOREDUCTASE;

EID: 84858238263     PISSN: 00225142     EISSN: 10970010     Source Type: Journal    
DOI: 10.1002/jsfa.4533     Document Type: Article
Times cited : (60)

References (49)
  • 2
    • 0025199418 scopus 로고
    • Relative contributions of greenhouse gas emissions to global warming
    • Lashof DA and Ahuja DR, Relative contributions of greenhouse gas emissions to global warming. Nature 344: 529-531 (1990).
    • (1990) Nature , vol.344 , pp. 529-531
    • Lashof, D.A.1    Ahuja, D.R.2
  • 3
    • 0031407641 scopus 로고    scopus 로고
    • Nitric oxide emissions from agricultural soils in temperate and tropical climates: sources, controls and mitigation options
    • Skiba U, Fowler D and Smith KA, Nitric oxide emissions from agricultural soils in temperate and tropical climates: sources, controls and mitigation options. Nutr Cycl Agroecosyst 48: 139-153 (1997).
    • (1997) Nutr Cycl Agroecosyst , vol.48 , pp. 139-153
    • Skiba, U.1    Fowler, D.2    Smith, K.A.3
  • 5
    • 0000266664 scopus 로고
    • The denitrifying prokaryotes
    • Springer-Verlag, New York
    • Zumft WG, The denitrifying prokaryotes The Prokaryotes, Springer-Verlag, New York, pp. 554-582 (1992).
    • (1992) The Prokaryotes , pp. 554-582
    • Zumft, W.G.1
  • 6
    • 0035319656 scopus 로고    scopus 로고
    • Community structure of denitrifiers, bacteria, and Archaea along redox gradients in Pacific northwest marine sediments by terminal restriction fragment length polymorphism analysis of amplified nitrite reductase (nirS) and 16S rRNA genes
    • Braker G, Ayala-del-Rio HL, Devol AH, Fesefeldt A and Tiedje JM, Community structure of denitrifiers, bacteria, and Archaea along redox gradients in Pacific northwest marine sediments by terminal restriction fragment length polymorphism analysis of amplified nitrite reductase (nirS) and 16S rRNA genes. Appl Environ Microbiol 67: 1893-1901 (2001).
    • (2001) Appl Environ Microbiol , vol.67 , pp. 1893-1901
    • Braker, G.1    Ayala-del-Rio, H.L.2    Devol, A.H.3    Fesefeldt, A.4    Tiedje, J.M.5
  • 7
    • 0031959006 scopus 로고    scopus 로고
    • Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology
    • Muyzer G and Smalla K, Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology. Antonie Van Leeuwenhoek Int J Gen Mol Microbiol 73: 127-141 (1998).
    • (1998) Antonie Van Leeuwenhoek Int J Gen Mol Microbiol , vol.73 , pp. 127-141
    • Muyzer, G.1    Smalla, K.2
  • 8
    • 2142761510 scopus 로고    scopus 로고
    • Observation of high seasonal variation in community structure of denitrifying bacteria in arable soil receiving artificial fertilizer and cattle manure by determining T-RFLP of nir gene fragments
    • Wolsing M and Prieme A, Observation of high seasonal variation in community structure of denitrifying bacteria in arable soil receiving artificial fertilizer and cattle manure by determining T-RFLP of nir gene fragments. FEMS Microbiol Ecol 48: 261-271 (2004).
    • (2004) FEMS Microbiol Ecol , vol.48 , pp. 261-271
    • Wolsing, M.1    Prieme, A.2
  • 9
    • 0347761170 scopus 로고    scopus 로고
    • Nitrous oxide reductase (nosZ) gene fragments differ between native and cultivated Michigan soils
    • Stres B, Mahne I, Avgustin G and Tiedje JM, Nitrous oxide reductase (nosZ) gene fragments differ between native and cultivated Michigan soils. Appl Environ Microbiol 70: 301-309 (2004).
    • (2004) Appl Environ Microbiol , vol.70 , pp. 301-309
    • Stres, B.1    Mahne, I.2    Avgustin, G.3    Tiedje, J.M.4
  • 10
    • 0032080514 scopus 로고    scopus 로고
    • Nitrous oxide reductase (nosZ) gene-specific PCR primers for detection of denitrifiers and three nosZ genes from marine sediments
    • Scala DJ and Kerkhof LJ, Nitrous oxide reductase (nosZ) gene-specific PCR primers for detection of denitrifiers and three nosZ genes from marine sediments. FEMS Microbiol Lett 162: 61-68 (1998).
    • (1998) FEMS Microbiol Lett , vol.162 , pp. 61-68
    • Scala, D.J.1    Kerkhof, L.J.2
  • 11
    • 10744221762 scopus 로고    scopus 로고
    • Influence of maize mucilage on the diversity and activity of the denitrifying community
    • Mounier E, Hallet S, Cheneby D, Benizri E, Gruet Y, Nguyen C, et al, Influence of maize mucilage on the diversity and activity of the denitrifying community. Environ Microbiol 6: 301-312 (2004).
    • (2004) Environ Microbiol , vol.6 , pp. 301-312
    • Mounier, E.1    Hallet, S.2    Cheneby, D.3    Benizri, E.4    Gruet, Y.5    Nguyen, C.6
  • 12
    • 29144511306 scopus 로고    scopus 로고
    • Activity and composition of the denitrifying bacterial community respond differently to long-term fertilization
    • Enwall K, Philippot L and Hallin S, Activity and composition of the denitrifying bacterial community respond differently to long-term fertilization. Appl Environ Microbiol 71: 8335-8343 (2005).
    • (2005) Appl Environ Microbiol , vol.71 , pp. 8335-8343
    • Enwall, K.1    Philippot, L.2    Hallin, S.3
  • 13
    • 0035861496 scopus 로고    scopus 로고
    • The genome of the natural genetic engineer Agrobacterium tumefaciens C58
    • Wood DW, Setubal JC, Kaul R, Monks DE, Kitajima JP, Okura VK, et al, The genome of the natural genetic engineer Agrobacterium tumefaciens C58. Science 294: 2317-2323 (2001).
    • (2001) Science , vol.294 , pp. 2317-2323
    • Wood, D.W.1    Setubal, J.C.2    Kaul, R.3    Monks, D.E.4    Kitajima, J.P.5    Okura, V.K.6
  • 14
    • 0032192641 scopus 로고    scopus 로고
    • Nitrous oxide release from arable soil: Importance of N-fertilization, crops and temporal variation
    • Kaiser EA, Kohrs K, Kucke M, Schnug E, Heinemeyer O and Munch JC, Nitrous oxide release from arable soil: Importance of N-fertilization, crops and temporal variation. Soil Biol Biochem 30: 1553-1563 (1998).
    • (1998) Soil Biol Biochem , vol.30 , pp. 1553-1563
    • Kaiser, E.A.1    Kohrs, K.2    Kucke, M.3    Schnug, E.4    Heinemeyer, O.5    Munch, J.C.6
  • 15
    • 0028163493 scopus 로고
    • Denitrification in the top-soil of managed grasslands in the Netherlands in relation to soil type and fertilizer level
    • Deklein CAM and Vanlogtestijn RSP, Denitrification in the top-soil of managed grasslands in the Netherlands in relation to soil type and fertilizer level. Plant Soil 163: 33-44 (1994).
    • (1994) Plant Soil , vol.163 , pp. 33-44
    • Deklein, C.A.M.1    Vanlogtestijn, R.S.P.2
  • 16
    • 0020064009 scopus 로고
    • Denitrification
    • Knowles R, Denitrification. Microbiol Rev 46: 43-70 (1982).
    • (1982) Microbiol Rev , vol.46 , pp. 43-70
    • Knowles, R.1
  • 18
    • 0031688125 scopus 로고    scopus 로고
    • 2O emissions from a UK pasture soil following the early spring application of cattle slurry and mineral fertiliser
    • 2O emissions from a UK pasture soil following the early spring application of cattle slurry and mineral fertiliser. Plant Soil 202: 15-25 (1998).
    • (1998) Plant Soil , vol.202 , pp. 15-25
    • Ellis, S.1    Yamulki, S.2    Dixon, E.3    Harrison, R.4    Jarvis, S.C.5
  • 20
    • 31344438304 scopus 로고    scopus 로고
    • Characteristics of crop straw resources in China and its utilization
    • Zhong HP, Yue YZ and Fan JW, Characteristics of crop straw resources in China and its utilization. Resource Sci 25: 62-67 (2003).
    • (2003) Resource Sci , vol.25 , pp. 62-67
    • Zhong, H.P.1    Yue, Y.Z.2    Fan, J.W.3
  • 21
    • 30344470608 scopus 로고    scopus 로고
    • Crop residue management for nutrient cycling and improving soil productivity in rice-based cropping systems in the tropics
    • Academic Press
    • Yadvinder S, Bijay S, Timsina J and Donald LS, Crop residue management for nutrient cycling and improving soil productivity in rice-based cropping systems in the tropics, in Advances in Agronomy. Academic Press, pp. 269-407 (2005).
    • (2005) Advances in Agronomy , pp. 269-407
    • Yadvinder, S.1    Bijay, S.2    Timsina, J.3    Donald, L.S.4
  • 23
    • 33645024488 scopus 로고    scopus 로고
    • Structure and activity of the denitrifying community in a maize-cropped field fertilized with composted pig manure or ammonium nitrate
    • Dambreville C, Hallet S, Nguyen C, Morvan T, Germon JC and Philippot L, Structure and activity of the denitrifying community in a maize-cropped field fertilized with composted pig manure or ammonium nitrate. FEMS Microbiol Ecol 56: 119-131 (2006).
    • (2006) FEMS Microbiol Ecol , vol.56 , pp. 119-131
    • Dambreville, C.1    Hallet, S.2    Nguyen, C.3    Morvan, T.4    Germon, J.C.5    Philippot, L.6
  • 24
    • 0842330605 scopus 로고    scopus 로고
    • Methane and nitrogen oxide fluxes in tropical agricultural soils: Sources, sinks and mechanisms
    • Mosier A, Wassmann R, Verchot L, King J and Palm C, Methane and nitrogen oxide fluxes in tropical agricultural soils: Sources, sinks and mechanisms. Environ Dev Sustain 6: 11-49 (2004).
    • (2004) Environ Dev Sustain , vol.6 , pp. 11-49
    • Mosier, A.1    Wassmann, R.2    Verchot, L.3    King, J.4    Palm, C.5
  • 25
    • 84986792533 scopus 로고
    • Comparative study of titrimetric and gravimetric methods for determination of organic carbon in soil
    • Kalembas SJ and Jenkinso DS, Comparative study of titrimetric and gravimetric methods for determination of organic carbon in soil. J Sci Food Agric 24: 1085-1090 (1973).
    • (1973) J Sci Food Agric , vol.24 , pp. 1085-1090
    • Kalembas, S.J.1    Jenkinso, D.S.2
  • 26
    • 0029667087 scopus 로고    scopus 로고
    • Potential denitrification activity assay in soil-With or without chloramphenicol?
    • Pell M, Stenberg B, Stenström J and Torstensson L, Potential denitrification activity assay in soil-With or without chloramphenicol? Soil Biol Biochem 28: 393-398 (1996).
    • (1996) Soil Biol Biochem , vol.28 , pp. 393-398
    • Pell, M.1    Stenberg, B.2    Stenström, J.3    Torstensson, L.4
  • 27
    • 78149470564 scopus 로고    scopus 로고
    • Impact of long-term fertilization on the composition of denitrifier communities based on nitrite reductase analyses in a paddy soil
    • Chen Z, Luo X, Hu R, Wu M, Wu J and Wei W, Impact of long-term fertilization on the composition of denitrifier communities based on nitrite reductase analyses in a paddy soil. Microbiol Ecol 60: 850-861 (2010).
    • (2010) Microbiol Ecol , vol.60 , pp. 850-861
    • Chen, Z.1    Luo, X.2    Hu, R.3    Wu, M.4    Wu, J.5    Wei, W.6
  • 29
    • 33646538443 scopus 로고    scopus 로고
    • Soil parent material is a key determinant of the bacterial community structure in arable soils
    • Ulrich A and Becker R, Soil parent material is a key determinant of the bacterial community structure in arable soils. FEMS Microbiol Ecol 56: 430-443 (2006).
    • (2006) FEMS Microbiol Ecol , vol.56 , pp. 430-443
    • Ulrich, A.1    Becker, R.2
  • 30
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment
    • Kumar S, Tamura K and Nei M, MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5: 150-163 (2004).
    • (2004) Brief Bioinform , vol.5 , pp. 150-163
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 31
    • 0036330611 scopus 로고    scopus 로고
    • Biodiversity of denitrifying and dinitrogen-fixing bacteria in an acid forest soil
    • Roesch C, Mergel A and Bothe H, Biodiversity of denitrifying and dinitrogen-fixing bacteria in an acid forest soil. Appl Environ Microbiol 68: 3818-3829 (2002).
    • (2002) Appl Environ Microbiol , vol.68 , pp. 3818-3829
    • Roesch, C.1    Mergel, A.2    Bothe, H.3
  • 32
    • 0036203309 scopus 로고    scopus 로고
    • Diversity of nitrite reductase (nirK and nirS) gene fragments in forested upland and wetland soils
    • Prieme A, Braker G and Tiedje JM, Diversity of nitrite reductase (nirK and nirS) gene fragments in forested upland and wetland soils. Appl Environ Microbiol 68: 1893-1900 (2002).
    • (2002) Appl Environ Microbiol , vol.68 , pp. 1893-1900
    • Prieme, A.1    Braker, G.2    Tiedje, J.M.3
  • 33
    • 0024588472 scopus 로고
    • Non-nodular endorhizospheric nitrogen-fixation in wetland rice
    • You CB and Zhou FY, Non-nodular endorhizospheric nitrogen-fixation in wetland rice. Can J Microbiol 35: 403-408 (1989).
    • (1989) Can J Microbiol , vol.35 , pp. 403-408
    • You, C.B.1    Zhou, F.Y.2
  • 34
    • 33747335398 scopus 로고    scopus 로고
    • Quantitative detection of the nosZ gene, encoding nitrous oxide reductase, and comparison of the abundances of 16S rRNA, narG, nirK, and nosZ genes in soils
    • Henry S, Bru D, Stres B, Hallet S and Philippot L, Quantitative detection of the nosZ gene, encoding nitrous oxide reductase, and comparison of the abundances of 16S rRNA, narG, nirK, and nosZ genes in soils. Appl Environ Microbiol 72: 5181-5189 (2006).
    • (2006) Appl Environ Microbiol , vol.72 , pp. 5181-5189
    • Henry, S.1    Bru, D.2    Stres, B.3    Hallet, S.4    Philippot, L.5
  • 35
    • 58149133837 scopus 로고    scopus 로고
    • Structure and function of denitrifying and nitrifying bacterial communities in relation to the plant species in a constructed wetland
    • Ruiz-Rueda O, Hallin S and Baneras L, Structure and function of denitrifying and nitrifying bacterial communities in relation to the plant species in a constructed wetland. FEMS Microbiol Ecol 67: 308-319 (2009).
    • (2009) FEMS Microbiol Ecol , vol.67 , pp. 308-319
    • Ruiz-Rueda, O.1    Hallin, S.2    Baneras, L.3
  • 37
    • 13844257500 scopus 로고    scopus 로고
    • Soil water content and organic carbon availability are major determinants of soil microbial community composition
    • Drenovsky RE, Vo D, Graham KJ and Scow KM, Soil water content and organic carbon availability are major determinants of soil microbial community composition. Microbiol Ecol 48: 424-430 (2004).
    • (2004) Microbiol Ecol , vol.48 , pp. 424-430
    • Drenovsky, R.E.1    Vo, D.2    Graham, K.J.3    Scow, K.M.4
  • 39
    • 0036946694 scopus 로고    scopus 로고
    • Molecular analysis of the nitrate-reducing community from unplanted and maize-planted soils
    • Philippot L, Piutti S, Martin-Laurent F, Hallet S and Germon JC, Molecular analysis of the nitrate-reducing community from unplanted and maize-planted soils. Appl Environ Microbiol 68: 6121-6128 (2002).
    • (2002) Appl Environ Microbiol , vol.68 , pp. 6121-6128
    • Philippot, L.1    Piutti, S.2    Martin-Laurent, F.3    Hallet, S.4    Germon, J.C.5
  • 40
    • 0142040877 scopus 로고    scopus 로고
    • Community composition and functioning of denitrifying bacteria from adjacent meadow and forest soils
    • Rich JJ, Heichen RS, Bottomley PJ, Cromack K and Myrold DD, Community composition and functioning of denitrifying bacteria from adjacent meadow and forest soils. Appl Environ Microbiol 69: 5974-5982 (2003).
    • (2003) Appl Environ Microbiol , vol.69 , pp. 5974-5982
    • Rich, J.J.1    Heichen, R.S.2    Bottomley, P.J.3    Cromack, K.4    Myrold, D.D.5
  • 41
    • 70349127272 scopus 로고    scopus 로고
    • Temporal shifts in diversity and quantity of nirS and nirK in a rice paddy field soil
    • Yoshida M, Ishii S, Otsuka S and Senoo K, Temporal shifts in diversity and quantity of nirS and nirK in a rice paddy field soil. Soil Biol Biochem 41: 2044-2051 (2009).
    • (2009) Soil Biol Biochem , vol.41 , pp. 2044-2051
    • Yoshida, M.1    Ishii, S.2    Otsuka, S.3    Senoo, K.4
  • 42
    • 0037184270 scopus 로고    scopus 로고
    • Denitrifying genes in bacterial and Archaeal genomes
    • Philippot L, Denitrifying genes in bacterial and Archaeal genomes. Biochim Biophys Acta-Gene Struct Express 1577: 355-376 (2002).
    • (2002) Biochim Biophys Acta-Gene Struct Express , vol.1577 , pp. 355-376
    • Philippot, L.1
  • 43
    • 67349287510 scopus 로고    scopus 로고
    • Relationship between N-cycling communities and ecosystem functioning in a 50-year-old fertilization experiment
    • Hallin S, Jones CM, Schloter M and Philippot L, Relationship between N-cycling communities and ecosystem functioning in a 50-year-old fertilization experiment. Isme J 3: 597-605 (2009).
    • (2009) Isme J , vol.3 , pp. 597-605
    • Hallin, S.1    Jones, C.M.2    Schloter, M.3    Philippot, L.4
  • 44
    • 0023406087 scopus 로고
    • Soil microsites as a source of denitrification variability
    • Parkin TB, Soil microsites as a source of denitrification variability. Soil Sci Soc Am J 51: 1194-1199 (1987).
    • (1987) Soil Sci Soc Am J , vol.51 , pp. 1194-1199
    • Parkin, T.B.1
  • 45
    • 33748792525 scopus 로고    scopus 로고
    • Abundance of narG, nirS, nirK, and nosZ genes of denitrifying bacteria during primary successions of a glacier foreland
    • Kandeler E, Deiglmayr K, Tscherko D, Bru D and Philippot L, Abundance of narG, nirS, nirK, and nosZ genes of denitrifying bacteria during primary successions of a glacier foreland. Appl Environ Microbiol 72: 5957-5962 (2006).
    • (2006) Appl Environ Microbiol , vol.72 , pp. 5957-5962
    • Kandeler, E.1    Deiglmayr, K.2    Tscherko, D.3    Bru, D.4    Philippot, L.5
  • 46
    • 0036793715 scopus 로고    scopus 로고
    • Detection and diversity of expressed denitrification genes in estuarine sediments after reverse transcription-PCR amplification from mRNA
    • Nogales B, Timmis KN, Nedwell DB and Osborn AM, Detection and diversity of expressed denitrification genes in estuarine sediments after reverse transcription-PCR amplification from mRNA. Appl Environ Microbiol 68: 5017-5025 (2002).
    • (2002) Appl Environ Microbiol , vol.68 , pp. 5017-5025
    • Nogales, B.1    Timmis, K.N.2    Nedwell, D.B.3    Osborn, A.M.4
  • 48
    • 0001347759 scopus 로고
    • Wheat and Barley straw decomposition under field conditions-Effect of soil type and plant cover on weight-loss, nitrogen and potassium content
    • Christensen BT, Wheat and Barley straw decomposition under field conditions-Effect of soil type and plant cover on weight-loss, nitrogen and potassium content. Soil Biol Biochem 17: 691-697 (1985).
    • (1985) Soil Biol Biochem , vol.17 , pp. 691-697
    • Christensen, B.T.1
  • 49
    • 0000116773 scopus 로고
    • Carbon sources for bacterial denitrification
    • Beauchamp EG, Trevors JT and Paul JW, Carbon sources for bacterial denitrification. Adv Soil Sci 10: 113-142 (1989).
    • (1989) Adv Soil Sci , vol.10 , pp. 113-142
    • Beauchamp, E.G.1    Trevors, J.T.2    Paul, J.W.3


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