메뉴 건너뛰기




Volumn 136, Issue 2, 2012, Pages 145-156

Use of tyramide-fluorescence in situ hybridization and chromosome microdissection for ascertaining homology relationships and chromosome linkage group associations in oats

Author keywords

Chromosome microdissection; Linkage group; Physical mapping; Tyr FISH

Indexed keywords

ISOPROPAMIDE IODIDE; MICROSATELLITE DNA;

EID: 84858081575     PISSN: 14248581     EISSN: 14219794     Source Type: Journal    
DOI: 10.1159/000335641     Document Type: Article
Times cited : (9)

References (40)
  • 1
    • 70349288278 scopus 로고    scopus 로고
    • Genome evolution in allopolyploid wheat - A revolutionary reprogramming followed by gradual changes
    • Feldman M, Levi AA: Genome evolution in allopolyploid wheat - a revolutionary reprogramming followed by gradual changes. J Genet Genomics 36:511-518 (2009).
    • (2009) J Genet Genomics , vol.36 , pp. 511-518
    • Feldman, M.1    Levi, A.A.2
  • 2
    • 0029310518 scopus 로고
    • Chromosomal distribution of a repeated DNA from C-genome heterochromatin and the identification of a new ribosomal DNA locus in the Avena genus
    • Fominaya A, Hueros G, Loarce Y, Ferrer E: Chromosomal distribution of a repeated DNA from C-genome heterochromatin and the identification of a new ribosomal DNA locus in the Avena genus. Genome 38:548-557 (1995).
    • (1995) Genome , vol.38 , pp. 548-557
    • Fominaya, A.1    Hueros, G.2    Loarce, Y.3    Ferrer, E.4
  • 3
    • 84858071242 scopus 로고    scopus 로고
    • Molecular genetic and cytogenetic evidence supporting the genome relationships of the genus Avena
    • Sharma AK, Sharma A (eds): Science Publishers, Enfield
    • Fominaya A, Loarce Y, Irigoyen ML, Ferrer E: Molecular genetic and cytogenetic evidence supporting the genome relationships of the genus Avena; in Sharma AK, Sharma A (eds): Plant Genome. Biodiversity and Evolution, Vol. 1, Part D, pp 305-324 (Science Publishers, Enfield 2005).
    • (2005) Plant Genome. Biodiversity and Evolution , vol.1 , Issue.PART D , pp. 305-324
    • Fominaya, A.1    Loarce, Y.2    Irigoyen, M.L.3    Ferrer, E.4
  • 5
    • 0019201736 scopus 로고
    • Sequence organization of the repeated units in the nucleus of the wheat which contains 5S-rRNA genes
    • Gerlach WL, Dyer TA: Sequence organization of the repeated units in the nucleus of the wheat which contains 5S-rRNA genes. Nucleic Acids Res 8:4851-4865 (1980).
    • (1980) Nucleic Acids Res , vol.8 , pp. 4851-4865
    • Gerlach, W.L.1    Dyer, T.A.2
  • 6
    • 34147167259 scopus 로고    scopus 로고
    • A palindrome-driven complex rearrangement of 22q11.2 and 8q24.1 elucidated using novel technologies
    • Gotter AL, Nimmakayalu MA, Jalali GR, Hacker AM, Vorstman J, et al: A palindrome-driven complex rearrangement of 22q11.2 and 8q24.1 elucidated using novel technologies. Genome Res 17:470-481 (2007).
    • (2007) Genome Res , vol.17 , pp. 470-481
    • Gotter, A.L.1    Nimmakayalu, M.A.2    Jalali, G.R.3    Hacker, A.M.4    Vorstman, J.5
  • 8
    • 1842854783 scopus 로고    scopus 로고
    • Fluorescent in situ hybridization mapping of Avena sativa L. cv. 'Sun II' and its monosomic lines using cloned repetitive DNA sequences
    • Irigoyen ML, Linares C, Ferrer E, Fominaya A: Fluorescent in situ hybridization mapping of Avena sativa L. cv. 'Sun II' and its monosomic lines using cloned repetitive DNA sequences. Genome 45:1230-1237 (2002).
    • (2002) Genome , vol.45 , pp. 1230-1237
    • Irigoyen, M.L.1    Linares, C.2    Ferrer, E.3    Fominaya, A.4
  • 9
    • 4544302136 scopus 로고    scopus 로고
    • Isolation and mapping of resistance gene analogs from the Avena strigosa genome
    • Irigoyen ML, Loarce Y, Fominaya A, Ferrer E: Isolation and mapping of resistance gene analogs from the Avena strigosa genome. Theor Appl Genet 109:713-724 (2004).
    • (2004) Theor Appl Genet , vol.109 , pp. 713-724
    • Irigoyen, M.L.1    Loarce, Y.2    Fominaya, A.3    Ferrer, E.4
  • 10
    • 33644938622 scopus 로고    scopus 로고
    • Cloning and characterization of resistance gene analogs from Avena species
    • Irigoyen ML, Ferrer E, Loarce Y: Cloning and characterization of resistance gene analogs from Avena species. Genome 49:54-63 (2006).
    • (2006) Genome , vol.49 , pp. 54-63
    • Irigoyen, M.L.1    Ferrer, E.2    Loarce, Y.3
  • 11
    • 0033996757 scopus 로고    scopus 로고
    • Geographical distribution of a chromosome 7C and 17 intergenomic translocation in cultivated oat
    • Jellen EN, Beard J: Geographical distribution of a chromosome 7C and 17 intergenomic translocation in cultivated oat. Crop Sci 400:256-263 (2000).
    • (2000) Crop Sci , vol.400 , pp. 256-263
    • Jellen, E.N.1    Beard, J.2
  • 12
    • 0031473328 scopus 로고    scopus 로고
    • Characterization of 'Sun II' oat monosomic through C-banding and identification of eight new 'Sun II' monosomics
    • Jellen EN, Rines HW, Fox SL, Davis DW, Phillips RL, Gill BS: Characterization of 'Sun II' oat monosomic through C-banding and identification of eight new 'Sun II' monosomics. Theor Appl Genet 95:1190-1195 (1997).
    • (1997) Theor Appl Genet , vol.95 , pp. 1190-1195
    • Jellen, E.N.1    Rines, H.W.2    Fox, S.L.3    Davis, D.W.4    Phillips, R.L.5    Gill, B.S.6
  • 13
    • 4544245758 scopus 로고    scopus 로고
    • Chromosome pairing using repetitive DNA sequences as probes for somatic chromosome identification in maize
    • Kato A, Lamb JC, Birchler JA: Chromosome pairing using repetitive DNA sequences as probes for somatic chromosome identification in maize. Proc Natl Acad Sci USA 101:13554-13559 (2004).
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 13554-13559
    • Kato, A.1    Lamb, J.C.2    Birchler, J.A.3
  • 14
    • 0035049998 scopus 로고    scopus 로고
    • Localization of singlecopy T-DNA insertion in transgenic shallots (Allium cepa) by using ultra-sensitive FISH with tyramide signal amplification
    • Khrustaleva LI, Kik C: Localization of singlecopy T-DNA insertion in transgenic shallots (Allium cepa) by using ultra-sensitive FISH with tyramide signal amplification. Plant J 25:699-707 (2001).
    • (2001) Plant J , vol.25 , pp. 699-707
    • Khrustaleva, L.I.1    Kik, C.2
  • 15
    • 0031153953 scopus 로고    scopus 로고
    • Aneuploid marker assignment in hexaploid oat with the C genome as a reference for determining remnant homeology
    • Kianian SF, Fox SL, Rines HW, Phillips RL: Aneuploid marker assignment in hexaploid oat with the C genome as a reference for determining remnant homeology. Genome 40: 386-396 (1997).
    • (1997) Genome , vol.40 , pp. 386-396
    • Kianian, S.F.1    Fox, S.L.2    Rines, H.W.3    Phillips, R.L.4
  • 16
    • 0023426747 scopus 로고
    • MAPMAKER: An interactive computer package for constructing primary genetic linkage maps of experimental and natural populations
    • Lander E, Green P, Abrahamson J, Barlow A, Daly M, et al: MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1:174-181 (1987).
    • (1987) Genomics , vol.1 , pp. 174-181
    • Lander, E.1    Green, P.2    Abrahamson, J.3    Barlow, A.4    Daly, M.5
  • 17
    • 0001816299 scopus 로고
    • Oat evolution and cytogenetics
    • Welch RW (ed): Chapman & Hall, London
    • Leggett JM, Thomas H: Oat evolution and cytogenetics; in Welch RW (ed): The Oat Crop. Production and Utilization, pp 120-149 (Chapman & Hall, London 1995).
    • (1995) The Oat Crop. Production and Utilization , pp. 120-149
    • Leggett, J.M.1    Thomas, H.2
  • 18
    • 0001348749 scopus 로고    scopus 로고
    • The use of double fluorescence in situ hybridization to physically map the positions of 5S rDNA genes in relation to the chromosomal location of 18S-5.8S-26S rDNA and a C genome specific DNA sequence in the genus Avena
    • Linares C, Gonzalez J, Ferrer E, Fominaya A: The use of double fluorescence in situ hybridization to physically map the positions of 5S rDNA genes in relation to the chromosomal location of 18S-5.8S-26S rDNA and a C genome specific DNA sequence in the genus Avena . Genome 39:535-542 (1996).
    • (1996) Genome , vol.39 , pp. 535-542
    • Linares, C.1    Gonzalez, J.2    Ferrer, E.3    Fominaya, A.4
  • 19
    • 0032514750 scopus 로고    scopus 로고
    • Discrimination of the closely related A and D genomes of the hexaploid oat Avena sativa L
    • Linares C, Ferrer E, Fominaya A: Discrimination of the closely related A and D genomes of the hexaploid oat Avena sativa L. Proc Natl Acad Sci USA 95:12450-12455 (1998).
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 12450-12455
    • Linares, C.1    Ferrer, E.2    Fominaya, A.3
  • 20
    • 0036945067 scopus 로고    scopus 로고
    • Assignment of oat linkage groups to microdissected Avena strigosa chromosomes
    • Loarce Y, Ferrer E, Künzel G, Fominaya A: Assignment of oat linkage groups to microdissected Avena strigosa chromosomes. Theor Appl Genet 104:1011-1016 (2002).
    • (2002) Theor Appl Genet , vol.104 , pp. 1011-1016
    • Loarce, Y.1    Ferrer, E.2    Künzel, G.3    Fominaya, A.4
  • 21
    • 67749120612 scopus 로고    scopus 로고
    • Mapping of STS markers obtained from oat resistance gene analog sequences
    • Loarce Y, Sanz MJ, Irigoyen ML, Fominaya A, Ferrer E: Mapping of STS markers obtained from oat resistance gene analog sequences. Genome 52:608-619 (2009).
    • (2009) Genome , vol.52 , pp. 608-619
    • Loarce, Y.1    Sanz, M.J.2    Irigoyen, M.L.3    Fominaya, A.4    Ferrer, E.5
  • 22
    • 43149119027 scopus 로고    scopus 로고
    • On evolutionary pathways of Avena species
    • Loskutov IG: On evolutionary pathways of Avena species. Genet Resour Crop Evol 55:211-220 (2008).
    • (2008) Genet Resour Crop Evol , vol.55 , pp. 211-220
    • Loskutov, I.G.1
  • 23
    • 0026476635 scopus 로고
    • An RFLP-based linkage map of oats based on a cross between two diploid taxa (Avena atlantica and A. hirtula)
    • O'Donoughue LS, Wang Z, Roder M, Kneen B, Leggett M, et al: An RFLP-based linkage map of oats based on a cross between two diploid taxa (Avena atlantica and A . hirtula) . Genome 35:765-771 (1992).
    • (1992) Genome , vol.35 , pp. 765-771
    • O'Donoughue, L.S.1    Wang, Z.2    Roder, M.3    Kneen, B.4    Leggett, M.5
  • 25
    • 0037268955 scopus 로고    scopus 로고
    • Integration of common bean (Phaseolus vulgaris L.) linkage and chromosomal maps
    • Pedrosa A, Vallejos CE, Bachmair A, Schweizer D: Integration of common bean (Phaseolus vulgaris L.) linkage and chromosomal maps. Theor Appl Genet 106:205-212 (2003).
    • (2003) Theor Appl Genet , vol.106 , pp. 205-212
    • Pedrosa, A.1    Vallejos, C.E.2    Bachmair, A.3    Schweizer, D.4
  • 26
    • 70350757670 scopus 로고    scopus 로고
    • Localization of Rad50, a single-copy gene, on group 5 chromosomes of wheat, using a FISH protocol employing tyramide for signal amplification (Tyr-FISH)
    • Pérez R, de Bustos A, Jouve N, Cuadrado A: Localization of Rad50, a single-copy gene, on group 5 chromosomes of wheat, using a FISH protocol employing tyramide for signal amplification (Tyr-FISH). Cytogenet Genome Res 125:321-328 (2009).
    • (2009) Cytogenet Genome Res , vol.125 , pp. 321-328
    • Pérez, R.1    De Bustos, A.2    Jouve, N.3    Cuadrado, A.4
  • 27
    • 0035055426 scopus 로고    scopus 로고
    • A linkage map of hexaploid oat based on grass anchor DNA clones and its relationship to other oat maps
    • Portyanko VA, Hoffman D, Lee M, Holland JB: A linkage map of hexaploid oat based on grass anchor DNA clones and its relationship to other oat maps. Genome 44:249-265 (2001).
    • (2001) Genome , vol.44 , pp. 249-265
    • Portyanko, V.A.1    Hoffman, D.2    Lee, M.3    Holland, J.B.4
  • 28
    • 22844444698 scopus 로고    scopus 로고
    • Quantitative trait loci for partial resistance to crown rust, Puccinia coronata, in cultivated oat, Avena sativa L
    • Portyanko VA, Chen G, Rines HW, Phillips RL, Leonard KJ, et al: Quantitative trait loci for partial resistance to crown rust, Puccinia coronata, in cultivated oat, Avena sativa L. Theor Appl Genet 111:313-324 (2005).
    • (2005) Theor Appl Genet , vol.111 , pp. 313-324
    • Portyanko, V.A.1    Chen, G.2    Rines, H.W.3    Phillips, R.L.4    Leonard, K.J.5
  • 31
    • 79955522174 scopus 로고    scopus 로고
    • Variation in crossover rates across a 3-Mb contig of bread wheat (Triticum aestivum) reveals the presence of a meiotic recombination hotspot
    • Saintenac C, Faure S, Remay A, Choulet F, Ravel C, et al: Variation in crossover rates across a 3-Mb contig of bread wheat (Triticum aestivum) reveals the presence of a meiotic recombination hotspot. Chromosoma 120:185-198 (2011).
    • (2011) Chromosoma , vol.120 , pp. 185-198
    • Saintenac, C.1    Faure, S.2    Remay, A.3    Choulet, F.4    Ravel, C.5
  • 32
    • 78649632261 scopus 로고    scopus 로고
    • A new chromosome nomenclature system for oat (Avena sativa L. and A. byzantina C. Koch) based on FISH analysis of monosomic lines
    • Sanz MJ, Jellen EN, Loarce Y, Irigoyen ML, Ferrer E, Fominaya A: A new chromosome nomenclature system for oat (Avena sativa L. and A. byzantina C. Koch) based on FISH analysis of monosomic lines. Theor Appl Genet 121:1541-1552 (2010).
    • (2010) Theor Appl Genet , vol.121 , pp. 1541-1552
    • Sanz, M.J.1    Jellen, E.N.2    Loarce, Y.3    Irigoyen, M.L.4    Ferrer, E.5    Fominaya, A.6
  • 33
    • 0034866855 scopus 로고    scopus 로고
    • Sequence elimination and cytosine methylation are rapid and reproducible responses of the genome to wide hybridization and allopolyploidy in wheat
    • Shaked H, Kashkush K, Ozkan H, Feldman M, Levy AA: Sequence elimination and cytosine methylation are rapid and reproducible responses of the genome to wide hybridization and allopolyploidy in wheat. Plant Cell 13:1749-1760 (2001).
    • (2001) Plant Cell , vol.13 , pp. 1749-1760
    • Shaked, H.1    Kashkush, K.2    Ozkan, H.3    Feldman, M.4    Levy, A.A.5
  • 34
    • 52949123689 scopus 로고    scopus 로고
    • Comparative analysis of diploid species of Avena L using cytogenetics and biochemical markers: Avena pilosa M.B. and A. clauda Dur
    • Shelukhina OY, Badaeva ED, Bresheva TA, Loskutov IG, Pukhalsky VA: Comparative analysis of diploid species of Avena L using cytogenetics and biochemical markers: Avena pilosa M.B. and A. clauda Dur. Russ J Genet 44:1087-1091 (2008).
    • (2008) Russ J Genet , vol.44 , pp. 1087-1091
    • Shelukhina, O.Y.1    Badaeva, E.D.2    Bresheva, T.A.3    Loskutov, I.G.4    Pukhalsky, V.A.5
  • 35
    • 0001464784 scopus 로고
    • Organization of repeated sequences in species of the genus Avena
    • Solano R, Hueros G, Fominaya A, Ferrer E: Organization of repeated sequences in species of the genus Avena . Theor Appl Genet 83:602-607 (1992).
    • (1992) Theor Appl Genet , vol.83 , pp. 602-607
    • Solano, R.1    Hueros, G.2    Fominaya, A.3    Ferrer, E.4
  • 36
    • 0141687267 scopus 로고    scopus 로고
    • Homoeologous set of NBS-LRR genes located at leaf and stripe rust resistance loci on short arms of chromosome 1 of wheat
    • Spielmeyer W, Lagudah E: Homoeologous set of NBS-LRR genes located at leaf and stripe rust resistance loci on short arms of chromosome 1 of wheat. Funct Integr Genomics 3:86-90 (2003).
    • (2003) Funct Integr Genomics , vol.3 , pp. 86-90
    • Spielmeyer, W.1    Lagudah, E.2
  • 37
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software
    • version 4.0
    • Tamura K, Dudley J, Nei M, Kumar S: MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596-1599 (2007).
    • (2007) Mol Biol Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 38
    • 3142761439 scopus 로고    scopus 로고
    • Generation of chromosome painting probes from single chromosomes by laser microdissection and linker-adaptor PCR
    • Thalhammer S, Langer S, Speicher MR, Heckl WM, Geigl JB: Generation of chromosome painting probes from single chromosomes by laser microdissection and linker-adaptor PCR. Chromosome Res 12:337-343 (2004).
    • (2004) Chromosome Res , vol.12 , pp. 337-343
    • Thalhammer, S.1    Langer, S.2    Speicher, M.R.3    Heckl, W.M.4    Geigl, J.B.5
  • 39
    • 63349085766 scopus 로고    scopus 로고
    • New DArT markers for oat provide enhanced map coverage and global germplasm characterization
    • Tinker NA, Kilian A, Wight CP, Heller-Uszynska K, Wenzl P, et al: New DArT markers for oat provide enhanced map coverage and global germplasm characterization. BMC Genomics 10:39 (2009).
    • (2009) BMC Genomics , vol.10 , pp. 39
    • Tinker, N.A.1    Kilian, A.2    Wight, C.P.3    Heller-Uszynska, K.4    Wenzl, P.5
  • 40
    • 0037308912 scopus 로고    scopus 로고
    • A molecular marker map in 'Kanota' X 'Ogle' hexaploid oat (Avena spp.) enhanced by additional markers and a robust framework
    • Wight CP, Tinker NA, Kianian SF, Sorrells ME, O'Donoughue LS, et al: A molecular marker map in 'Kanota' X 'Ogle' hexaploid oat (Avena spp.) enhanced by additional markers and a robust framework. Genome 46:28-47 (2003).
    • (2003) Genome , vol.46 , pp. 28-47
    • Wight, C.P.1    Tinker, N.A.2    Kianian, S.F.3    Sorrells, M.E.4    O'Donoughue, L.S.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.