Aneuploid marker assignment in hexaploid oat with the C genome as a reference for determining remnant homoeology

Genome

Volumn 40, Issue 3, 1997, Pages 386-396

  Kianian, Shahryar F ^a,b   Wu, Bai Chai ^a   Fox, Stephen L ^a,c   Rines, Howard W ^a   Phillips, Ronald L ^a  

^a UNIVERSITY OF MINNESOTA   (United States)

^b NORTH DAKOTA STATE UNIVERSITY   (United States)

^c UNIVERSITY OF SASKATCHEWAN   (Canada)

Author keywords

Aneuploids; C genome; Homoeology; Oat; Syntenic associations

Indexed keywords

AVENA SATIVA; EMBRYOPHYTA;

EID: 0031153953     PISSN: 08312796     EISSN: None     Source Type: Journal    
DOI: 10.1139/g97-052     Document Type: Article

References (48)

1. Andersen, J.A., Ogihara, Y., Sorrells, M.E., and Tanksley, S.D. 1992. Development of a chromosomal arm map for wheat based on RFLP markers. Theor. Appl. Genet. 83: 1035-1043.
2. Ansari, N., and Thomas, H. 1983. A study of homoeologous relationships in the cultivated oat Avena sativa (2n = 6x = 42). Theor. Appl. Genet. 66: 303-305.
3. Chao, S., Sharp, P.J., Worland, A.J., Warham, E.J., Koebner, R.M.D., and Gale, M.D. 1989. RFLP-based genetic maps of wheat homoeologous group 7 chromosomes. Theor. Appl. Genet. 78: 495-504.
4. Chen, Q., and Armstrong, K. 1994. Genomic in situ hybridization in Avena sativa. Genome, 37: 607-612.
5. Devey, M., and. Hart, G. 1988. Intergenomic restriction fragment length polymorphism in hexaploid wheat. Agronomy Abstracts. American Society of Agronomy, Madison, Wis.
6. Feinberg, A.P., and Vogelstein, B. 1983. A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity. Anal. Biochem. 132: 6-13.
7. Fominaya, A., Vega, C., and Ferrer, E. 1988a. Giemsa C-banded karyotypes of Avena species. Genome, 30: 627-632.
8. Fominaya, A., Vega, C., and Ferrer, E. 1988b. C-banding and nucleolar activity of tetraploid Avena species. Genome, 30: 633-638.
9. Gerlach, W.L., and Bedbrook, J.R. 1979. Cloning and characterization of ribosomal RNA genes from wheat and barley. Nucleic Acids Res. 71: 1869-1885.
10. Gill, K.S., Lubbers, E.L., Gill, B.S., Raupp, W.J., and Cox, T.S. 1991. A genetic linkage map of Triticum tauschii (DD) and its relationship to the D genome of bread wheat (AABBDD). Genome, 34: 362-374.
11. Guillin, E., Poggio, L., and Naranjo, C.A. 1995. Meiotic irregularities in Argentinian hexaploid oats. Cytologia, 60: 211-215.
12. Hacker, J.B., and Riley, R. 1965. Morphological and cytological effects of chromosome deficiency in Avena sativa. Can. J. Genet. Cytol. 7: 304-315.
13. Helentjaris, T., Weber, D., and Wright, S. 1986. Use of monosomics to map cloned DNA fragments in maize. Proc. Natl. Acad. Sci. U.S.A. 83: 6035-6039.
14. Hosaka, K., Kianian, S.F., McGrath, J.M., and Quiros, C.F. 1990. Development and chromosomal localization of genome-specific DNA markers of Brassica and the evolution of amphidiploids and n = 9 diploid species. Genome, 33: 131-142.
15. Hu, J., and Quiros, C.F. 1991. Molecular and cytological evidence of deletions in alien chromosomes for two monosomic addition lines of Brassica campestris-oleracea. Theor. Appl. Genet. 81: 221-226.
16. Jellen, E.N., Phillips, R.L., and Rines, H.W. 1993. C-banded karyotypes and polymorphisms in hexaploid oat accessions (Avena spp.) using Wright's stain. Genome, 36: 1129-1137.
17. Jellen, E.N., Gill, B.S., and Cox, T.S. 1994. Genomic in situ hybridization differentiates between A/D- and C-genome chromatin and detects intergenomic translocations in polyploid oat species (genus Avena). Genome, 37: 613-618.
18. Jellen, E.N., Rines, H.W., Fox, S.L., Davis, D.W., Phillips, R.L., and Gill, B.S. 1997. Characterization of Sun II oat monosomics through C-banding and identification of a new monosomic. Theor. Appl. Genet. In press.
19. Katsiotis, A., Schmidt, T., and Heslop-Harrison, J.S. 1996. Chromosomal and genomic organization of TyI-copia-like retrotransposon sequences in the genus Avena. Genome, 39: 410-417.
20. Kianian, S.F., and Quiros C.F. 1992. Trait inheritance, fertility, and genomic relationships of some n = 9 Brassica species. Genet. Res. Crop Evol. 39: 165-175.
21. Lagudah, E.S., Appels, R., Brown, A.H.D., and McNell, D. 1991. The molecular-genetic analysis of Triticum tauschii, the D-genome donor to hexaploid wheat. Genome, 34: 375-386.
22. Leggett, J.M. 1992. Classification and speciation of oat. In Oat science and technology. Edited by H.G. Marshall and M.E. Sorrells. American Society of Agronomy, Madison, Wis. pp. 29-52.
23. Leggett, J.M., and Markhand, G.S. 1995. The genomic identification of some monosomics of Avena sativa L. cv. Sun II using genomic in situ hybridization. Genome, 38: 747-751.
24. Linares, C., Vega, C., Ferrer, E., and Fominaya, A. 1992. Identification of C-banded chromosomes in meiosis and the analysis of nucleolar activity in Avena byzantina C. Koch cv. Kanota. Theor. Appl. Genet. 83: 650-654.
25. Linares, C., Gonzalez, J., Ferrer, E., and Fominaya, A. 1996. The use of double fluorescence in situ hybridization to physically map the position of 5S rDNA genes in relation to the chromosomal location of 18S-5.8S-26S rDNA and a C genome specific DNA sequence in the genus Avena. Genome, 39: 535-542.
26. McCouch, S., Kochert, G., Yu, Z., Wang, Z., Khush, G., Coffman, W., and Tanksley, S.D. 1988. Molecular mapping of rice chromosomes. Theor. Appl. Genet. 76: 815-829.
27. McMullen, M.S., Phillips, R.L., and Stuthman, D.D. 1982. Meiotic irregularities in Avena sativa L. / A. sterilis L. hybrids and breeding implications. Crop Sci. 22: 890-897.
28. Mendu, N., Rines, H.W., and Silflow, C.D. 1993. Mapping of beta-tubulin genomic sequences in hexaploid oat (Avena sativa L.). Theor. Appl. Genet. 86: 135-140.
29. Miller, T.E., and Reader, S.M. 1987. A guide to the homoeology of chromosomes within the Triticeae. Theor. Appl. Genet. 74: 214-217.
30. Morikawa, T. 1985. Identification of the 21 monosomic lines in Avena byzantina C. Koch cv. Kanota. Theor. Appl. Genet. 70: 271-278.
31. O'Donoughue, L.S., Souza, E., Tanksley, S.D., and Sorrells, M.E. 1994a. Relationships among North American oat cultivars based on restriction fragment length polymorphism. Crop Sci. 34: 1251-1258.
32. O'Donoughue, L.S., Rayapati, P.J., Kianian, S.F., Sorrells, M.E., Tanksley, S.D., Lee, M., Rines, H.W., and Phillips, R.L. 1994b. Development of RFLP-based linkage maps in diploid and hexaploid oat (Avena sp.). In DNA-based markers in plants. Edited by R.L. Phillips and I.K. Vasil. Kluwer Academic Publishers, Dordrecht, The Netherlands. pp. 359-374.
33. O'Donoughue, L.S., Kianian, S.F., Rayapati, R.J., Penner, G.A., Sorrells, M.E., Tanksley, S.D., Phillips, R.L., Rines, H.W., Lee, M., Fedak, G., Molnar, S.J., Hoffman, D., Salas, C.A., Wu, B., Autrique, E., and Van Deynze, A. 1995. A molecular linkage map of cultivated oat. Genome, 38: 368-380.
34. Phillips, R.L., and Vasil I.K. (Editors). 1994. DNA-based markers in plants. Kluwer Academic Publishers, Dordrecht, The Netherlands.
35. Rajhathy, T. 1991. The chromosomes of Avena. In Chromosome engineering in plants: genetics, breeding, evolution. Part A. Edited by P.K. Gupta and T. Tsuchiya, Elsevier Scientific Publishing, Amsterdam, The Netherlands. pp. 449-467.
36. Rajhathy, T, and Thomas, H. 1974. Cytogenetics of oats (Avena L.). Edited by A. Wilkes. Genetics Society of Canada Miscellaneous Publication No. 2. Genetics Society of Canada, Ottawa, Ont., Canada.
37. Rayapati, P.J., Gregory, J.W., Lee, M., and Wise, R.P. 1995. A linkage map of diploid oat Avena based on RFLP loci and a locus conferring resistance to Puccinia coronata var. avenae. Theor. Appl. Genet. 89: 831-837.
38. Rines, H.W., and Johnson, S.S. 1988. Synaptic mutants in hexaploid oats (Avena sativa L.). Genome, 30: 1-7.
39. Rooney, W.L., Jellen E.N., Phillips R.L., Rines H.W., and Kianian, S.F. 1994. Identification of homoeologous chromosomes in hexaploid oat (A. byzantina cv. Kanota) using monosomics and RFLP analysis. Theor. Appl. Genet. 89: 329-335.
40. Sambrook J., Fritsch, E.F., and Maniatis, T. 1989. Molecular cloning: a laboratory manual. 2nd ed. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
41. Sears, E.R. 1966. Nullisomic-tetrasomic combinations in hexaploid wheat. In Chromosome manipulations and plant genetics. Edited by R. Riley and K.R. Lewis. Oliver and Boyd, Edinburgh, U.K. pp. 29-45.
42. Shotwell, M.A., Boyer, S.K., Chesnut, R.S., and Larkins, B.A. 1990. Analysis of seed storage protein genes of oats. J. Biol. Chem. 265: 9652-9658.
43. Simons, M.D., Martens, J.W., McKenzie, R.I.H., Nishiyama, I., Sadanaga, K., Sebesta, J., and Thomas, H. 1978. Oats: a standardized system of nomenclature for genes and chromosomes and catalog of genes governing characters. U.S. Dep. Agric., Agric. Handb. No. 509.
44. Singh, R.J., and Kolb, F.L. 1991. Chromosomal interchanges in six hexaploid oat (Avena sativa L.) genotypes. Crop Sci. 31: 726-729.
45. Tanksley, S.D., Ganal, M.W., Price, J.P. , De Vicente, M.C., Bonierbale, M.W., Broun, P., Fulton, T.M., Giovannoni, J.J., Grandillo, S., Martin, G.B., Messenger, R., Miller, L., Paterson, A., Pineda, O., Roder, M.S., Wing, R.A., Wu, W., and Young, N.D. 1991. High density molecular linkage maps of tomato and potato genomes. Genetics, 131: 1119-1130.
46. Thomas, H. 1992. Cytogenetics of Avena. In Oat science and technology. Edited by H.G. Marshall and M.E. Sorrells. American Society of Agronomy, Madison, Wis.
47. Van Deynze, A.E., Nelson, J.C., O'Donoughue, L.S., Ahn, S.N., Siripoonwiwat, W., Harrington, S.E., Yglesias, E.S., Braga, D.P., McCouch, S.R., and Sorrells, M.E. 1995. Comparative mapping in grasses. Oat relationships. Mol. Gen. Genet. 249: 349-356.
48. Yen, S.-T., and Filion, W.G. 1977. Differential Giemsa staining in plants. V. Two types of constitutive heterochromatin in species of Avena. Can. J. Genet. Cytol. 19: 739-743.