메뉴 건너뛰기




Volumn 13, Issue 1, 2012, Pages

Antigen-presenting genes and genomic copy number variations in the Tasmanian devil MHC

Author keywords

Copy number variation; Devil facial tumour disease; MHC; Tasmanian devil

Indexed keywords

MAJOR HISTOCOMPATIBILITY ANTIGEN CLASS 1; MAJOR HISTOCOMPATIBILITY ANTIGEN CLASS 2; ANTIGEN;

EID: 84857979790     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-13-87     Document Type: Article
Times cited : (50)

References (48)
  • 1
    • 3242726016 scopus 로고    scopus 로고
    • Large marsupial carnivores
    • Oxford, UK: Oxford University Press, Macdonald DW
    • Jones ME. Large marsupial carnivores. The Encyclopedia of Mammals 2001, 814-817. Oxford, UK: Oxford University Press, Macdonald DW.
    • (2001) The Encyclopedia of Mammals , pp. 814-817
    • Jones, M.E.1
  • 2
    • 77649337906 scopus 로고    scopus 로고
    • Tasmanian devil (Sarcophilus harrisi) extinction on the Australian mainland in the mid-Holocene: multicausality and ENSO intensification
    • Brown OJF. Tasmanian devil (Sarcophilus harrisi) extinction on the Australian mainland in the mid-Holocene: multicausality and ENSO intensification. Alcheringa: An Australasian Journal of Palaeontology 2006, 30:49-57.
    • (2006) Alcheringa: An Australasian Journal of Palaeontology , vol.30 , pp. 49-57
    • Brown, O.J.F.1
  • 4
    • 3242688188 scopus 로고    scopus 로고
    • Genetic diversity and population structure of Tasmanian devils, the largest marsupial carnivore
    • 10.1111/j.1365-294X.2004.02239.x, 15245394
    • Jones ME, Paetkau D, Geffen E, Moritz C. Genetic diversity and population structure of Tasmanian devils, the largest marsupial carnivore. Molecular Ecology 2004, 13:2197-2209. 10.1111/j.1365-294X.2004.02239.x, 15245394.
    • (2004) Molecular Ecology , vol.13 , pp. 2197-2209
    • Jones, M.E.1    Paetkau, D.2    Geffen, E.3    Moritz, C.4
  • 5
    • 48249108985 scopus 로고    scopus 로고
    • Seasonal, demographic and density-related patterns of contact between Tasmanian devils: Implications for transmission of Devil Facial Tumour Disease
    • Hamede R, McCallum H, Jones ME. Seasonal, demographic and density-related patterns of contact between Tasmanian devils: Implications for transmission of Devil Facial Tumour Disease. Austral Ecology 2008, 33:614-622.
    • (2008) Austral Ecology , vol.33 , pp. 614-622
    • Hamede, R.1    McCallum, H.2    Jones, M.E.3
  • 6
    • 31844442380 scopus 로고    scopus 로고
    • Allograft theory: transmission of devil facial-tumour disease
    • 10.1038/439549a, 16452970
    • Pearse AM, Swift K. Allograft theory: transmission of devil facial-tumour disease. Nature 2006, 439:549. 10.1038/439549a, 16452970.
    • (2006) Nature , vol.439 , pp. 549
    • Pearse, A.M.1    Swift, K.2
  • 8
    • 35148865228 scopus 로고    scopus 로고
    • The Immune Response of the Tasmanian Devil (Sarcophilus harrisi) and Devil Facial Tumour Disease
    • Woods G, Kreiss A, Belov K, Siddle H, Obendorf D, Muller H. The Immune Response of the Tasmanian Devil (Sarcophilus harrisi) and Devil Facial Tumour Disease. EcoHealth 2007, 4:338-345.
    • (2007) EcoHealth , vol.4 , pp. 338-345
    • Woods, G.1    Kreiss, A.2    Belov, K.3    Siddle, H.4    Obendorf, D.5    Muller, H.6
  • 11
    • 84864814622 scopus 로고
    • Histocompatibility Antigens Structure and Function
    • New York: Chapman and Hall
    • Parham P, Strominger JL. Histocompatibility Antigens Structure and Function. Receptors and Recognition Series B 1982, 14. New York: Chapman and Hall.
    • (1982) Receptors and Recognition Series B , vol.14
    • Parham, P.1    Strominger, J.L.2
  • 12
    • 26244455510 scopus 로고    scopus 로고
    • Mechanisms of MHC class I-restricted antigen processing and cross-presentation
    • 10.1111/j.0105-2896.2005.00316.x, 16181333
    • Cresswell P, Ackerman AL, Giodini A, Peaper DR, Wearsch PA. Mechanisms of MHC class I-restricted antigen processing and cross-presentation. Immunological Reviews 2005, 207:145-157. 10.1111/j.0105-2896.2005.00316.x, 16181333.
    • (2005) Immunological Reviews , vol.207 , pp. 145-157
    • Cresswell, P.1    Ackerman, A.L.2    Giodini, A.3    Peaper, D.R.4    Wearsch, P.A.5
  • 13
    • 0028115664 scopus 로고
    • Antigen presentation by non-classical class I molecules
    • 10.1016/0952-7915(94)90031-0, 8172679
    • Stroynowski I, Lindahl KF. Antigen presentation by non-classical class I molecules. Current Opinion in Immunology 1994, 6:38-44. 10.1016/0952-7915(94)90031-0, 8172679.
    • (1994) Current Opinion in Immunology , vol.6 , pp. 38-44
    • Stroynowski, I.1    Lindahl, K.F.2
  • 14
    • 0033932668 scopus 로고    scopus 로고
    • MHC class II-restricted antigen processing and presentation
    • Pieters J. MHC class II-restricted antigen processing and presentation. Advances in Immunology 2000, 75:159-208.
    • (2000) Advances in Immunology , vol.75 , pp. 159-208
    • Pieters, J.1
  • 15
    • 0030791307 scopus 로고    scopus 로고
    • Evolution by the birth-and-death process in multigene families of the vertebrate immune system
    • Nei M, Gu X, Sitnikova T. Evolution by the birth-and-death process in multigene families of the vertebrate immune system. Proceedings of the National Academy of Sciences 1997, 94:7799-7806.
    • (1997) Proceedings of the National Academy of Sciences , vol.94 , pp. 7799-7806
    • Nei, M.1    Gu, X.2    Sitnikova, T.3
  • 16
    • 1542377379 scopus 로고    scopus 로고
    • Mini-review: Defense strategies and immunity-related genes
    • 10.1002/eji.200324693, 14971025
    • Trowsdale J, Parham P. Mini-review: Defense strategies and immunity-related genes. European Journal of Immunology 2004, 34:7-17. 10.1002/eji.200324693, 14971025.
    • (2004) European Journal of Immunology , vol.34 , pp. 7-17
    • Trowsdale, J.1    Parham, P.2
  • 18
    • 34548677556 scopus 로고    scopus 로고
    • Characterization of major histocompatibility complex class I and class II genes from the Tasmanian devil (Sarcophilus harrisi)
    • 10.1007/s00251-007-0238-2, 17673996
    • Siddle HV, Sanderson C, Belov K. Characterization of major histocompatibility complex class I and class II genes from the Tasmanian devil (Sarcophilus harrisi). Immunogenetics 2007, 59:753-760. 10.1007/s00251-007-0238-2, 17673996.
    • (2007) Immunogenetics , vol.59 , pp. 753-760
    • Siddle, H.V.1    Sanderson, C.2    Belov, K.3
  • 19
    • 77955355152 scopus 로고    scopus 로고
    • MHC gene copy number variation in Tasmanian devils: implications for the spread of a contagious cancer
    • 10.1098/rspb.2009.2362, 2880097, 20219742
    • Siddle HV, Marzec J, Cheng Y, Jones M, Belov K. MHC gene copy number variation in Tasmanian devils: implications for the spread of a contagious cancer. Proceedings of the Royal Society B 2010, 277:2001-2006. 10.1098/rspb.2009.2362, 2880097, 20219742.
    • (2010) Proceedings of the Royal Society B , vol.277 , pp. 2001-2006
    • Siddle, H.V.1    Marzec, J.2    Cheng, Y.3    Jones, M.4    Belov, K.5
  • 23
    • 68249162079 scopus 로고    scopus 로고
    • Evolution of the opossum major histocompatibility complex: evidence for diverse alternative splice patterns and low polymorphism among class I genes
    • 10.1111/j.1365-2567.2008.02994.x, 2753908, 19191910
    • Baker ML, Melman SD, Huntley J, Miller RD. Evolution of the opossum major histocompatibility complex: evidence for diverse alternative splice patterns and low polymorphism among class I genes. Immunology 2009, 128:e418-e431. 10.1111/j.1365-2567.2008.02994.x, 2753908, 19191910.
    • (2009) Immunology , vol.128
    • Baker, M.L.1    Melman, S.D.2    Huntley, J.3    Miller, R.D.4
  • 24
    • 0028987611 scopus 로고
    • Evolution of class I promoter sequences: relationship to function and diversity
    • 10.1111/j.1600-065X.1995.tb00678.x, 7558079
    • Vallejo AN, Pease LR. Evolution of class I promoter sequences: relationship to function and diversity. Immunological Reviews 1995, 143:249-262. 10.1111/j.1600-065X.1995.tb00678.x, 7558079.
    • (1995) Immunological Reviews , vol.143 , pp. 249-262
    • Vallejo, A.N.1    Pease, L.R.2
  • 25
    • 84864795746 scopus 로고    scopus 로고
    • The Marsupial Major Histocompatibility Complex
    • Dordrecht, Springer, Deakin JE, Waters PD, Graves JAM
    • Cheng Y, Siddle HV, Belov K. The Marsupial Major Histocompatibility Complex. Marsupial Genetics and Genomics 2010, Dordrecht, Springer, Deakin JE, Waters PD, Graves JAM.
    • (2010) Marsupial Genetics and Genomics
    • Cheng, Y.1    Siddle, H.V.2    Belov, K.3
  • 29
    • 77950405093 scopus 로고    scopus 로고
    • Genome-wide association study of CNVs in 16,000 cases of eight common diseases and 3,000 shared controls
    • 10.1038/nature08979, 2892339, 20360734, The Wellcome Trust Case Control Consortium
    • The Wellcome Trust Case Control Consortium Genome-wide association study of CNVs in 16,000 cases of eight common diseases and 3,000 shared controls. Nature 2010, 464:713-720. 10.1038/nature08979, 2892339, 20360734, The Wellcome Trust Case Control Consortium.
    • (2010) Nature , vol.464 , pp. 713-720
  • 30
    • 78149412746 scopus 로고    scopus 로고
    • Inactivation of a functional HLA-A gene: A 4-kb deletion turns HLA-A*24 into a pseudogene
    • 10.1016/j.humimm.2010.09.010, 20858522
    • Voorter CEM, Lauterbach N, Tilanus MGJ. Inactivation of a functional HLA-A gene: A 4-kb deletion turns HLA-A*24 into a pseudogene. Human Immunology 2010, 71:1197-1202. 10.1016/j.humimm.2010.09.010, 20858522.
    • (2010) Human Immunology , vol.71 , pp. 1197-1202
    • Voorter, C.E.M.1    Lauterbach, N.2    Tilanus, M.G.J.3
  • 31
    • 23044500870 scopus 로고    scopus 로고
    • Genomic rearrangements by LINE-1 insertion-mediated deletion in the human and chimpanzee lineages
    • 10.1093/nar/gki718, 1179734, 16034026
    • Han K, Sen SK, Wang J, Callinan PA, Lee J, Cordaux R, Liang P, Batzer MA. Genomic rearrangements by LINE-1 insertion-mediated deletion in the human and chimpanzee lineages. Nucleic Acids Research 2005, 33:4040-4052. 10.1093/nar/gki718, 1179734, 16034026.
    • (2005) Nucleic Acids Research , vol.33 , pp. 4040-4052
    • Han, K.1    Sen, S.K.2    Wang, J.3    Callinan, P.A.4    Lee, J.5    Cordaux, R.6    Liang, P.7    Batzer, M.A.8
  • 35
    • 80051786713 scopus 로고    scopus 로고
    • The tammar wallaby major histocompatibility complex shows evidence of past genomic instability
    • 10.1186/1471-2164-12-421, 3179965, 21854592
    • Siddle H, Deakin J, Coggill P, Wilming L, Harrow J, Kaufman J, Beck S, Belov K. The tammar wallaby major histocompatibility complex shows evidence of past genomic instability. BMC Genomics 2011, 12:421. 10.1186/1471-2164-12-421, 3179965, 21854592.
    • (2011) BMC Genomics , vol.12 , pp. 421
    • Siddle, H.1    Deakin, J.2    Coggill, P.3    Wilming, L.4    Harrow, J.5    Kaufman, J.6    Beck, S.7    Belov, K.8
  • 36
    • 0030768250 scopus 로고    scopus 로고
    • DNA-hybridisation Studies of Marsupials and their Implications for Metatherian Classification
    • Kirsch JAW, Lapointe F-J, Springer MS. DNA-hybridisation Studies of Marsupials and their Implications for Metatherian Classification. Australian Journal of Zoology 1997, 45:211-280.
    • (1997) Australian Journal of Zoology , vol.45 , pp. 211-280
    • Kirsch, J.A.W.1    Lapointe, F.-J.2    Springer, M.S.3
  • 38
    • 0001383018 scopus 로고    scopus 로고
    • Construction of P1 artificial chromosome (PAC) libraries from lower vertebrates
    • San Diego: Academic Press, Birren B, Lai E
    • Amemiya CT, Ota T, Litman GW. Construction of P1 artificial chromosome (PAC) libraries from lower vertebrates. Nonmammalian Genomic Analyses: A Practical Guide 1996, 223-256. San Diego: Academic Press, Birren B, Lai E.
    • (1996) Nonmammalian Genomic Analyses: A Practical Guide , pp. 223-256
    • Amemiya, C.T.1    Ota, T.2    Litman, G.W.3
  • 39
    • 0032529138 scopus 로고    scopus 로고
    • An improved approach for construction of bacterial artificial chromosome libraries
    • 10.1006/geno.1998.5423, 9740665
    • Oosegawa K, Woon PY, Zhao B, Frengen E, Tateno M, Catanese JJ, de Jong PJ. An improved approach for construction of bacterial artificial chromosome libraries. Genomics 1998, 52:1-8. 10.1006/geno.1998.5423, 9740665.
    • (1998) Genomics , vol.52 , pp. 1-8
    • Oosegawa, K.1    Woon, P.Y.2    Zhao, B.3    Frengen, E.4    Tateno, M.5    Catanese, J.J.6    de Jong, P.J.7
  • 41
    • 84864800024 scopus 로고    scopus 로고
    • Human and Vertebrate Analysis and Annotation Guidelines
    • Human and Vertebrate Analysis and Annotation Guidelines. , http://www.sanger.ac.uk/research/projects/vertebrategenome/havana/assets/guidelines.pdf
  • 42
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice
    • 10.1093/nar/22.22.4673, 308517, 7984417
    • Thompson JD, Higgins DG, Gibson TJ. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Research 1994, 22:4673-4680. 10.1093/nar/22.22.4673, 308517, 7984417.
    • (1994) Nucleic Acids Research , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 44
    • 0002051540 scopus 로고    scopus 로고
    • Bioedit: a user friendly biological sequence alignment editor and analysis program for windows 95/98/NT
    • Hall T. Bioedit: a user friendly biological sequence alignment editor and analysis program for windows 95/98/NT. Nucleic Acids Symposium Series 1999, 41:95-98.
    • (1999) Nucleic Acids Symposium Series , vol.41 , pp. 95-98
    • Hall, T.1
  • 45
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • 10.1093/molbev/msm1092
    • Tamura K, Dudley J, Nei M, Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Molecular Biology and Evolution 2007, 10.1093/molbev/msm1092.
    • (2007) Molecular Biology and Evolution
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 46
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou N, Nei M. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Molecular Biology and Evolution 1987, 4:406-425.
    • (1987) Molecular Biology and Evolution , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 47
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein J. Confidence limits on phylogenies: An approach using the bootstrap. Evolution 1985, 39:783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 48
    • 0025324091 scopus 로고
    • Structure, function, and diversity of class I major histocompatibility complex molecules
    • 10.1146/annurev.bi.59.070190.001345, 2115762
    • Bjorkman PJ, Parham P. Structure, function, and diversity of class I major histocompatibility complex molecules. Annual Review of Biochemistry 1990, 59:253-288. 10.1146/annurev.bi.59.070190.001345, 2115762.
    • (1990) Annual Review of Biochemistry , vol.59 , pp. 253-288
    • Bjorkman, P.J.1    Parham, P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.