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Volumn 108, Issue 1-3, 2012, Pages 34-44

The impact of interspecific competition on lineage evolution and a rapid peak shift by interdemic genetic mixing in experimental bacterial populations

Author keywords

Bacteria; Evolvability; Fitness landscape; Interspecific competition; Peak shift; Sex

Indexed keywords

COLIFORM BACTERIUM; CONSPECIFIC; EPISTASIS; FITNESS; GENOME; INTERSPECIFIC COMPETITION; MUTATION; RECOMBINATION; SEXUAL DIMORPHISM;

EID: 84857918382     PISSN: 03032647     EISSN: 18728324     Source Type: Journal    
DOI: 10.1016/j.biosystems.2012.01.001     Document Type: Article
Times cited : (1)

References (62)
  • 1
    • 0017751759 scopus 로고
    • Cell-cell interactions in conjugating Escherichia coli: role of traT protein in surface exclusion
    • Achtman M., Kennedy N., Skurray R. Cell-cell interactions in conjugating Escherichia coli: role of traT protein in surface exclusion. Proc. Natl. Acad. Sci. U.S.A. 1977, 74:5104-5108.
    • (1977) Proc. Natl. Acad. Sci. U.S.A. , vol.74 , pp. 5104-5108
    • Achtman, M.1    Kennedy, N.2    Skurray, R.3
  • 2
    • 0021920903 scopus 로고
    • Physiological characterization of adaptive clones in evolving populations of the yeast, Saccharomyces cerevisiae
    • Adams J., Paquin C., Oeller P.W., Lee L.W. Physiological characterization of adaptive clones in evolving populations of the yeast, Saccharomyces cerevisiae. Genetics 1985, 110:173-185.
    • (1985) Genetics , vol.110 , pp. 173-185
    • Adams, J.1    Paquin, C.2    Oeller, P.W.3    Lee, L.W.4
  • 3
    • 0015270127 scopus 로고
    • Early transfer of genes determining transfer functions by some Hfr strains in Escherichia coli K 12
    • Broda P., Meacock P., Achtman M. Early transfer of genes determining transfer functions by some Hfr strains in Escherichia coli K 12. Mol. Gen. Genet. 1972, 116:336-347.
    • (1972) Mol. Gen. Genet. , vol.116 , pp. 336-347
    • Broda, P.1    Meacock, P.2    Achtman, M.3
  • 4
    • 0033055004 scopus 로고    scopus 로고
    • Evolution by small steps and rugged landscapes in the RNA virus ø6
    • Burch C.L., Chao L. Evolution by small steps and rugged landscapes in the RNA virus ø6. Genetics 1999, 151:921-927.
    • (1999) Genetics , vol.151 , pp. 921-927
    • Burch, C.L.1    Chao, L.2
  • 5
    • 0034632830 scopus 로고    scopus 로고
    • Evolvability of anRNA virus is determined by its mutational neighborhood
    • Burch C.L., Chao L. Evolvability of anRNA virus is determined by its mutational neighborhood. Nature 2000, 406:625-628.
    • (2000) Nature , vol.406 , pp. 625-628
    • Burch, C.L.1    Chao, L.2
  • 6
    • 0019593643 scopus 로고
    • Genetic diversity and temporal variation in the E. coli population of a human host
    • Caugant D.A., Levin B.R., Selander R.K. Genetic diversity and temporal variation in the E. coli population of a human host. Genetics 1981, 98:467-490.
    • (1981) Genetics , vol.98 , pp. 467-490
    • Caugant, D.A.1    Levin, B.R.2    Selander, R.K.3
  • 7
    • 0037069686 scopus 로고    scopus 로고
    • Sex releases the speed limit on evolution
    • Colegrave N. Sex releases the speed limit on evolution. Nature 2002, 420:664-666.
    • (2002) Nature , vol.420 , pp. 664-666
    • Colegrave, N.1
  • 8
    • 34548693859 scopus 로고    scopus 로고
    • Recombination speeds adaptation by reducing competition between beneficial mutations in populations of Escherichia coli
    • Cooper T.F. Recombination speeds adaptation by reducing competition between beneficial mutations in populations of Escherichia coli. PLoS Biol. 2007, 5(9):e225. 10.1371/journal.pbio.0050225.
    • (2007) PLoS Biol. , vol.5 , Issue.9
    • Cooper, T.F.1
  • 9
    • 0036797562 scopus 로고    scopus 로고
    • Epistasis: what it means, what it doesn't mean, and statistical methods to detect it in humans
    • Cordell H.J. Epistasis: what it means, what it doesn't mean, and statistical methods to detect it in humans. Hum. Mol. Genet. 2002, 11(20):2463-2468.
    • (2002) Hum. Mol. Genet. , vol.11 , Issue.20 , pp. 2463-2468
    • Cordell, H.J.1
  • 10
    • 0030844574 scopus 로고    scopus 로고
    • A critique of Sewall Wright's shifting balance theory of evolution
    • Coyne J.A., Barton N.H., Turelli M. A critique of Sewall Wright's shifting balance theory of evolution. Evolution 1997, 51:643-671.
    • (1997) Evolution , vol.51 , pp. 643-671
    • Coyne, J.A.1    Barton, N.H.2    Turelli, M.3
  • 11
    • 0034124337 scopus 로고    scopus 로고
    • Is Wright's shifting valance process important in evolution?
    • Coyne J.A., Barton N.H., Turelli M. Is Wright's shifting valance process important in evolution?. Evolution 2000, 54:306-317.
    • (2000) Evolution , vol.54 , pp. 306-317
    • Coyne, J.A.1    Barton, N.H.2    Turelli, M.3
  • 12
    • 0025527885 scopus 로고
    • Experimental studies of natural selection in bacteria
    • Dykhuizen D.E. Experimental studies of natural selection in bacteria. Annu. Rev. Ecol. Syst. 1990, 21:373-398.
    • (1990) Annu. Rev. Ecol. Syst. , vol.21 , pp. 373-398
    • Dykhuizen, D.E.1
  • 13
    • 0025788069 scopus 로고
    • Recombination in Escherichia coli and the definition of bacterial species
    • Dykhuizen D.E., Green L. Recombination in Escherichia coli and the definition of bacterial species. J. Bacteriol. 1991, 173:7257-7268.
    • (1991) J. Bacteriol. , vol.173 , pp. 7257-7268
    • Dykhuizen, D.E.1    Green, L.2
  • 14
    • 0030017289 scopus 로고    scopus 로고
    • Punctuated evolution caused by selection of rare beneficial mutations
    • Elena S.F., Cooper V.S., Lenski R.E. Punctuated evolution caused by selection of rare beneficial mutations. Science 1996, 272:1802-1804.
    • (1996) Science , vol.272 , pp. 1802-1804
    • Elena, S.F.1    Cooper, V.S.2    Lenski, R.E.3
  • 15
    • 0031825414 scopus 로고    scopus 로고
    • The adaptive surface in ecology
    • Fear K.K., Price T. The adaptive surface in ecology. Oikos 1998, 82:440-448.
    • (1998) Oikos , vol.82 , pp. 440-448
    • Fear, K.K.1    Price, T.2
  • 16
    • 0000862044 scopus 로고    scopus 로고
    • Structure and function of the F factor and mechanism of conjugation
    • ASM Press, Washington, DC, (Chapter 126), F.C. Neidhardt (Ed.)
    • Firth N., Ippen-Ihler K., Skurray R.A. Structure and function of the F factor and mechanism of conjugation. Escherichia coli and Salmonella 1996, ASM Press, Washington, DC, (Chapter 126). second ed. F.C. Neidhardt (Ed.).
    • (1996) Escherichia coli and Salmonella
    • Firth, N.1    Ippen-Ihler, K.2    Skurray, R.A.3
  • 17
    • 0031665134 scopus 로고    scopus 로고
    • F-phenocopies: characterization of expression of the F transfer region in stationary phase
    • Frost L.S., Manchak J. F-phenocopies: characterization of expression of the F transfer region in stationary phase. Microbiology 1998, 144:2579-2587.
    • (1998) Microbiology , vol.144 , pp. 2579-2587
    • Frost, L.S.1    Manchak, J.2
  • 18
    • 0242416123 scopus 로고    scopus 로고
    • Perspective: models of speciation: what have we learned in 40 years?
    • Gavrilets S. Perspective: models of speciation: what have we learned in 40 years?. Evolution 2003, 57:2197-2215.
    • (2003) Evolution , vol.57 , pp. 2197-2215
    • Gavrilets, S.1
  • 20
    • 0023684771 scopus 로고
    • Altered replicase specificity is responsible for resistance to defective interfering particle interference of an Sdi-mutant of vesicular stomatitis virus
    • Giachetti C., Holland J.J. Altered replicase specificity is responsible for resistance to defective interfering particle interference of an Sdi-mutant of vesicular stomatitis virus. J. Virol. 1988, 62:3614-3621.
    • (1988) J. Virol. , vol.62 , pp. 3614-3621
    • Giachetti, C.1    Holland, J.J.2
  • 21
    • 15844412621 scopus 로고    scopus 로고
    • Sex increases the efficacy of natural selection in experimental yeast populations
    • Goddard M.R., Godfray H.C.J., Burt A. Sex increases the efficacy of natural selection in experimental yeast populations. Nature 2005, 434:636-640.
    • (2005) Nature , vol.434 , pp. 636-640
    • Goddard, M.R.1    Godfray, H.C.J.2    Burt, A.3
  • 22
    • 0034066186 scopus 로고    scopus 로고
    • The ongoing synthesis: a reply to Coyne, Barton, and Turelli
    • Goodnight C.J., Wade M.J. The ongoing synthesis: a reply to Coyne, Barton, and Turelli. Evolution 2000, 54(1):317-324.
    • (2000) Evolution , vol.54 , Issue.1 , pp. 317-324
    • Goodnight, C.J.1    Wade, M.J.2
  • 23
    • 0028605344 scopus 로고
    • Clonal divergence in Escherichia coli as a result of recombination, not mutation
    • Guttman D.S., Dykhuizen D.E. Clonal divergence in Escherichia coli as a result of recombination, not mutation. Science 1994, 266:1380-1383.
    • (1994) Science , vol.266 , pp. 1380-1383
    • Guttman, D.S.1    Dykhuizen, D.E.2
  • 24
    • 0018868854 scopus 로고
    • Single-nutrient microbial competition: qualitative agreement between experimental and theoretically forecast outcomes
    • Hansen S.R., Hubbell S.P. Single-nutrient microbial competition: qualitative agreement between experimental and theoretically forecast outcomes. Science 1980, 207:1491-1493.
    • (1980) Science , vol.207 , pp. 1491-1493
    • Hansen, S.R.1    Hubbell, S.P.2
  • 25
    • 77049160309 scopus 로고
    • The mechanism of genetic recombination in Escherichia coli
    • Hayes W. The mechanism of genetic recombination in Escherichia coli. Cold Spring Harbor Symp. Quant. Biol. 1953, 18:75-93.
    • (1953) Cold Spring Harbor Symp. Quant. Biol. , vol.18 , pp. 75-93
    • Hayes, W.1
  • 26
    • 0023376305 scopus 로고
    • Evolution of Escherichia coli during growth in a constant environment
    • Helling R.B., Vargas C.N., Adams J. Evolution of Escherichia coli during growth in a constant environment. Genetics 1987, 116:349-358.
    • (1987) Genetics , vol.116 , pp. 349-358
    • Helling, R.B.1    Vargas, C.N.2    Adams, J.3
  • 28
    • 0020372975 scopus 로고
    • Quantum evolution and punctuated equilibria in continuous genetic characters
    • Kirkpatrick M. Quantum evolution and punctuated equilibria in continuous genetic characters. Am. Nat. 1982, 119:833-848.
    • (1982) Am. Nat. , vol.119 , pp. 833-848
    • Kirkpatrick, M.1
  • 30
    • 0035448522 scopus 로고    scopus 로고
    • When does a clone deserve a name? A perspective on bacterial species based on population genetics
    • Lan R., Reeves P.R. When does a clone deserve a name? A perspective on bacterial species based on population genetics. Trends Microbiol. 2001, 9:419-424.
    • (2001) Trends Microbiol. , vol.9 , pp. 419-424
    • Lan, R.1    Reeves, P.R.2
  • 32
    • 51149212256 scopus 로고
    • Gene recombination in Escherichia coli
    • Lederberg J., Tatum E.L. Gene recombination in Escherichia coli. Nature 1946, 158:558.
    • (1946) Nature , vol.158 , pp. 558
    • Lederberg, J.1    Tatum, E.L.2
  • 33
    • 0026279651 scopus 로고
    • Long-term experimental evolution in Escherichia coli. I. Adaptation and divergence during 2,000 generations
    • Lenski R.E., Rose M.R., Simpson S.C., Tadler S.C. Long-term experimental evolution in Escherichia coli. I. Adaptation and divergence during 2,000 generations. Am. Nat. 1991, 138:1315-1341.
    • (1991) Am. Nat. , vol.138 , pp. 1315-1341
    • Lenski, R.E.1    Rose, M.R.2    Simpson, S.C.3    Tadler, S.C.4
  • 34
    • 0002607809 scopus 로고    scopus 로고
    • Hfr strains of Escherichia coli K-12
    • ASM Press, Washington, DC, (Chapter 127), F.C. Neidhardt (Ed.)
    • Low K.B. Hfr strains of Escherichia coli K-12. Escherichia coli and Salmonella 1996, ASM Press, Washington, DC, (Chapter 127). second ed. F.C. Neidhardt (Ed.).
    • (1996) Escherichia coli and Salmonella
    • Low, K.B.1
  • 35
    • 0036431723 scopus 로고    scopus 로고
    • Compensatory adaptation to the deleterious effect of antibiotic resistance in Salmonella typhimurium
    • Maisnier-Patin S., Berg O.G., Lijas L., Andersson D.I. Compensatory adaptation to the deleterious effect of antibiotic resistance in Salmonella typhimurium. Mol. Microbiol. 2002, 46:355-366.
    • (2002) Mol. Microbiol. , vol.46 , pp. 355-366
    • Maisnier-Patin, S.1    Berg, O.G.2    Lijas, L.3    Andersson, D.I.4
  • 37
    • 0032554279 scopus 로고    scopus 로고
    • Ecological mechanisms of evolution by natural selection: causal processes generating density-and-frequency dependent fitness
    • Nakajima T. Ecological mechanisms of evolution by natural selection: causal processes generating density-and-frequency dependent fitness. J. Theor. Biol. 1998, 190:313-331.
    • (1998) J. Theor. Biol. , vol.190 , pp. 313-331
    • Nakajima, T.1
  • 38
    • 0343696952 scopus 로고
    • Evidence for clonal population structure in Escherichia coli
    • Ochman H., Selander R.K. Evidence for clonal population structure in Escherichia coli. Proc. Natl. Acad. Sci. U.S.A. 1984, 81:198-201.
    • (1984) Proc. Natl. Acad. Sci. U.S.A. , vol.81 , pp. 198-201
    • Ochman, H.1    Selander, R.K.2
  • 39
    • 0021336829 scopus 로고
    • Vesicular stomatis virus mutants resistant to defective-interfering particles accumulate stable 5'-terminal and fewer 3'-terminal mutations in a stepwise manner
    • O'Hara P.J., Horodyski F.M., Nichol S.T., Holland J.J. Vesicular stomatis virus mutants resistant to defective-interfering particles accumulate stable 5'-terminal and fewer 3'-terminal mutations in a stepwise manner. J. Virol. 1984, 49:793-798.
    • (1984) J. Virol. , vol.49 , pp. 793-798
    • O'Hara, P.J.1    Horodyski, F.M.2    Nichol, S.T.3    Holland, J.J.4
  • 40
    • 0344994508 scopus 로고    scopus 로고
    • Epigenetic inheritance, genetic assimilation and speciation
    • Pal C., Miklos I. Epigenetic inheritance, genetic assimilation and speciation. J. Theor. Biol. 1999, 200:19-37.
    • (1999) J. Theor. Biol. , vol.200 , pp. 19-37
    • Pal, C.1    Miklos, I.2
  • 41
    • 0021069904 scopus 로고
    • Relative fitness can decrease in evolving asexal populations of S. cerevisiae
    • Paquin C.E., Adams J. Relative fitness can decrease in evolving asexal populations of S. cerevisiae. Nature 1983, 306:368-371.
    • (1983) Nature , vol.306 , pp. 368-371
    • Paquin, C.E.1    Adams, J.2
  • 42
    • 37249030834 scopus 로고    scopus 로고
    • Is evolvability evolvable?
    • Pigliucci M. Is evolvability evolvable?. Nat. Rev. Genet. 2008, 9:75-82.
    • (2008) Nat. Rev. Genet. , vol.9 , pp. 75-82
    • Pigliucci, M.1
  • 43
    • 0030839556 scopus 로고    scopus 로고
    • Adaptation to the fitness cost of antibiotic resistance in E. coli
    • Schrag S.J., Perrot V., Levin B.R. Adaptation to the fitness cost of antibiotic resistance in E. coli. Proc. R. Soc. Lond. B 1997, 264:1287-1291.
    • (1997) Proc. R. Soc. Lond. B , vol.264 , pp. 1287-1291
    • Schrag, S.J.1    Perrot, V.2    Levin, B.R.3
  • 44
    • 0019276739 scopus 로고
    • Genetic diversity and structure in populations of Escherichia coli
    • Selander R.K., Levin B.R. Genetic diversity and structure in populations of Escherichia coli. Science 1980, 210:545-547.
    • (1980) Science , vol.210 , pp. 545-547
    • Selander, R.K.1    Levin, B.R.2
  • 46
    • 0011837480 scopus 로고
    • Gene recombination in the bacterium Escherichia coli
    • Tatum E.L., Lederberg J. Gene recombination in the bacterium Escherichia coli. J. Bacteriol. 1947, 53(6):673-684.
    • (1947) J. Bacteriol. , vol.53 , Issue.6 , pp. 673-684
    • Tatum, E.L.1    Lederberg, J.2
  • 47
    • 0000817765 scopus 로고
    • Resource competition between planktonic algae: an experimental and theoretical approach
    • Tilman D. Resource competition between planktonic algae: an experimental and theoretical approach. Ecology 1977, 58:338-348.
    • (1977) Ecology , vol.58 , pp. 338-348
    • Tilman, D.1
  • 50
    • 0032425770 scopus 로고    scopus 로고
    • The theories of Fisher and Wright in the context of metapopulations: when nature does many small experiments
    • Wade M., Goodnight C.J. The theories of Fisher and Wright in the context of metapopulations: when nature does many small experiments. Evolution 1998, 52:1537-1553.
    • (1998) Evolution , vol.52 , pp. 1537-1553
    • Wade, M.1    Goodnight, C.J.2
  • 51
    • 0029661332 scopus 로고    scopus 로고
    • Complex adaptations and the evolution of evolvability
    • Wagner G.P., Altenberg L. Complex adaptations and the evolution of evolvability. Evolution 1996, 50:967-976.
    • (1996) Evolution , vol.50 , pp. 967-976
    • Wagner, G.P.1    Altenberg, L.2
  • 52
    • 21044435697 scopus 로고    scopus 로고
    • Sign epistasis and genetic constraint on evolutionary trajectories
    • Weinreich D.M., Watson R.A., Chao L. Sign epistasis and genetic constraint on evolutionary trajectories. Evolution 2005, 59(6):1165-1174.
    • (2005) Evolution , vol.59 , Issue.6 , pp. 1165-1174
    • Weinreich, D.M.1    Watson, R.A.2    Chao, L.3
  • 53
    • 0024871673 scopus 로고
    • Phenotypic plasticity and origins of diversity
    • West-Eberhard M.J. Phenotypic plasticity and origins of diversity. Annu. Rev. Syst. 1989, 20:249-278.
    • (1989) Annu. Rev. Syst. , vol.20 , pp. 249-278
    • West-Eberhard, M.J.1
  • 54
    • 0028812080 scopus 로고
    • Variance-induced peak shift
    • Whitlock M.C. Variance-induced peak shift. Evolution 1995, 49:252-259.
    • (1995) Evolution , vol.49 , pp. 252-259
    • Whitlock, M.C.1
  • 55
    • 0020558165 scopus 로고
    • Multilocus genetic structure in natural populations of Escherichia coli
    • Whittam T.S., Ochman H., Selander R.K. Multilocus genetic structure in natural populations of Escherichia coli. Proc. Natl. Acad. Sci. U.S.A. 1983, 80:1751-1755.
    • (1983) Proc. Natl. Acad. Sci. U.S.A. , vol.80 , pp. 1751-1755
    • Whittam, T.S.1    Ochman, H.2    Selander, R.K.3
  • 56
    • 7644241959 scopus 로고    scopus 로고
    • The role of H-NS in silencing F transfer gene expression during entry into stationary phase
    • Will W.R., Lu J., Frost L.S. The role of H-NS in silencing F transfer gene expression during entry into stationary phase. Mol. Microbiol. 2004, 54(3):769-782.
    • (2004) Mol. Microbiol. , vol.54 , Issue.3 , pp. 769-782
    • Will, W.R.1    Lu, J.2    Frost, L.S.3
  • 57
    • 0016245265 scopus 로고
    • Interactions between the surface exclusion systems of some F-like plasmids
    • Willetts N., Maule J. Interactions between the surface exclusion systems of some F-like plasmids. Genet. Res. 1977, 24:81-89.
    • (1977) Genet. Res. , vol.24 , pp. 81-89
    • Willetts, N.1    Maule, J.2
  • 58
  • 59
    • 0020392141 scopus 로고
    • The shifting balance theory and macroevolution
    • Wright S. The shifting balance theory and macroevolution. Ann. Rev. Genet. 1982, 16:1-19.
    • (1982) Ann. Rev. Genet. , vol.16 , pp. 1-19
    • Wright, S.1
  • 60
    • 0002027029 scopus 로고
    • A new evolutionary law
    • van Valen L. A new evolutionary law. Evol. Theory 1973, 1:1-30.
    • (1973) Evol. Theory , vol.1 , pp. 1-30
    • van Valen, L.1
  • 61
    • 0019509253 scopus 로고
    • Role of membrane potential and ATP in complex formation between Escherichia coli male cells and filamentous phage fd
    • Yamamoto M., Kanegasaki S., Yoshikawa M. Role of membrane potential and ATP in complex formation between Escherichia coli male cells and filamentous phage fd. J. Gen. Microbiol. 1981, 123:343-349.
    • (1981) J. Gen. Microbiol. , vol.123 , pp. 343-349
    • Yamamoto, M.1    Kanegasaki, S.2    Yoshikawa, M.3
  • 62
    • 0030791414 scopus 로고    scopus 로고
    • The advantage of sex in evolving yeast populations
    • Zeyl C., Bell G. The advantage of sex in evolving yeast populations. Nature 1997, 388:465-468.
    • (1997) Nature , vol.388 , pp. 465-468
    • Zeyl, C.1    Bell, G.2


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